Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p59920 Brassica napus HOM05D007847 ORTHO05D009946 1.2e-180 636.3 302 100.0
BolC3t18257H Brassica oleracea HOM05D007847 ORTHO05D009946 1.2e-180 636.3 302 100.0
BraA06t26189Z Brassica rapa HOM05D007847 ORTHO05D009946 1.5e-167 592.8 294 95.2
A06p32610 Brassica napus HOM05D007847 ORTHO05D009946 1.6e-166 589.3 294 94.9
Thhalv10004606m.g Eutrema salsugineum HOM05D007847 ORTHO05D009946 9.3e-154 547.0 299 86.0
BcaC01g02838 Brassica carinata HOM05D007847 ORTHO05D009946 1.7e-147 526.2 301 85.7
AL8G43460 Arabidopsis lyrata HOM05D007847 ORTHO05D009946 1.4e-146 523.1 293 83.6
Carub.0008s2664 Capsella rubella HOM05D007847 ORTHO05D009946 4.2e-146 521.5 289 84.8
THA.LOC104819277 Tarenaya hassleriana HOM05D007847 ORTHO05D009946 1.6e-134 483.0 299 75.6
QL06p038286 Quercus lobata HOM05D007847 ORTHO05D009946 1.4e-114 416.8 289 66.8
CiPaw.08G148900 Carya illinoinensis HOM05D007847 ORTHO05D009946 3.6e-113 412.1 294 65.0
Manes.13G107200 Manihot esculenta HOM05D007847 ORTHO05D009946 1.0e-112 410.6 294 65.3
RcHm_v2.0_Chr2g0109231 Rosa chinensis HOM05D007847 ORTHO05D009946 4.8e-110 401.7 294 63.6
MD02G1192700 Malus domestica HOM05D007847 ORTHO05D009946 1.8e-109 399.8 288 64.9
Dinv26974 Davidia involucrata HOM05D007847 ORTHO05D009946 5.3e-109 398.3 294 63.6
Duzib264G0083 Durio zibethinus HOM05D007847 ORTHO05D009946 7.0e-109 397.9 288 63.5
CARHR279740 Cardamine hirsuta HOM05D007847 ORTHO05D009946 4.5e-108 395.2 223 83.4
Haze_03966 Corylus avellana HOM05D007847 ORTHO05D009946 7.7e-108 394.4 298 63.4
CSS0008963 Camellia sinensis var. sinensis HOM05D007847 ORTHO05D009946 2.2e-107 392.9 291 63.6
CSS0006637 Camellia sinensis var. sinensis HOM05D007847 ORTHO05D009946 3.8e-107 392.1 291 63.6
Ciclev10026132m.g Citrus clementina HOM05D007847 ORTHO05D009946 3.8e-107 392.1 292 61.3
AT5G65740 Arabidopsis thaliana HOM05D007847 ORTHO05D009946 6.5e-107 391.3 215 85.1
Gorai.003G033500 Gossypium raimondii HOM05D007847 ORTHO05D009946 8.5e-107 391.0 287 62.4
Nn5g30695 Nelumbo nucifera HOM05D007847 ORTHO05D009946 1.6e-105 386.7 287 60.3
FvH4_1g18540 Fragaria vesca HOM05D007847 ORTHO05D009946 4.7e-105 385.2 294 61.6
Cc07_g07550 Coffea canephora HOM05D007847 ORTHO05D009946 1.4e-104 383.6 296 59.8
CANSAT01G1865 Cannabis sativa HOM05D007847 ORTHO05D009946 1.8e-104 383.3 287 65.2
TWI77G0524 Tripterygium wilfordii HOM05D007847 ORTHO05D009946 6.7e-104 381.3 295 60.7
Gohir.D03G032000 Gossypium hirsutum HOM05D007847 ORTHO05D009946 8.8e-104 380.9 287 61.7
FAN19G2742 Fragaria x ananassa HOM05D007847 ORTHO05D009946 1.1e-103 380.6 296 60.8
FAN23G2885 Fragaria x ananassa HOM05D007847 ORTHO05D009946 1.1e-103 380.6 299 59.9
FAN28G0215 Fragaria x ananassa HOM05D007847 ORTHO05D009946 1.8e-101 373.2 310 57.7
TAR381G1308 Trochodendron aralioides HOM05D007847 ORTHO05D009946 2.4e-101 372.9 290 61.4
ECA238G4198 Erigeron canadensis HOM05D007847 ORTHO05D009946 5.3e-101 371.7 290 60.0
Actinidia11949 Actinidia chinensis HOM05D007847 ORTHO05D009946 7.0e-101 371.3 295 60.7
Sabra07G0006500 Salix brachista HOM05D007847 ORTHO05D009946 7.0e-101 371.3 271 61.3
Migut.H00314 Erythranthe guttata HOM05D007847 ORTHO05D009946 9.1e-101 370.9 295 57.3
Aqoxy6G02972 Aquilegia oxysepala HOM05D007847 ORTHO05D009946 1.6e-100 370.2 291 58.8
Sopen03g007680 Solanum pennellii HOM05D007847 ORTHO05D009946 2.6e-100 369.4 290 59.0
Solyc03g043870.3 Solanum lycopersicum HOM05D007847 ORTHO05D009946 3.5e-100 369.0 284 60.2
HanXRQChr14g0447671 Helianthus annuus HOM05D007847 ORTHO05D009946 7.2e-98 361.3 279 60.2
PSO541G2530 Papaver somniferum HOM05D007847 ORTHO05D009946 9.4e-98 360.9 294 58.5
Sc22g0002130 Simmondsia chinensis HOM05D007847 ORTHO05D009946 1.2e-97 360.5 300 57.7
DCAR_010781 Daucus carota HOM05D007847 ORTHO05D009946 1.8e-96 356.7 270 59.6
PSO675G2957 Papaver somniferum HOM05D007847 ORTHO05D009946 4.0e-96 355.5 290 57.2
Gohir.A02G148500 Gossypium hirsutum HOM05D007847 ORTHO05D009946 1.3e-94 350.5 287 57.8
Prupe.6G213700 Prunus persica HOM05D007847 ORTHO05D009946 1.7e-94 350.1 284 61.3
PGR102G2702 Punica granatum HOM05D007847 ORTHO05D009946 1.7e-94 350.1 295 54.2
Thecc.01G078900 Theobroma cacao HOM05D007847 ORTHO05D009946 6.3e-94 348.2 289 57.4
Atru.chr3.1082 Acer truncatum HOM05D007847 ORTHO05D009946 2.7e-92 342.8 246 61.8
Oeu013362.2 Olea europaea HOM05D007847 ORTHO05D009946 4.5e-92 342.0 272 57.7
Peaxi162Scf00118g01311 Petunia axillaris HOM05D007847 ORTHO05D009946 5.9e-92 341.7 274 57.3
MBI16_g08505_MAGBIO Magnolia biondii HOM05D007847 ORTHO05D009946 1.1e-90 337.4 281 56.2
Cfa006792 Carpinus fangiana HOM05D007847 ORTHO05D009946 3.2e-90 335.9 237 64.6
Os03g0726900 Oryza sativa ssp. japonica HOM05D007847 ORTHO05D009946 8.0e-89 331.3 281 55.5
Potri.007G008300 Populus trichocarpa HOM05D007847 ORTHO05D009946 1.5e-87 327.0 238 60.9
Zm00001eb215660 Zea mays HOM05D007847 ORTHO05D009946 3.4e-87 325.9 280 54.3
Nitab4.5_0005210g0020 Nicotiana tabacum HOM05D007847 ORTHO05D009946 1.8e-85 320.1 275 56.7
ATR0629G045 Amborella trichopoda HOM05D007847 ORTHO05D009946 2.4e-85 319.7 293 50.2
COL.COLO4_11640 Corchorus olitorius HOM05D007847 ORTHO05D009946 2.9e-83 312.8 269 56.9
FAN26G2270 Fragaria x ananassa HOM05D007847 ORTHO05D009946 1.5e-82 310.5 330 47.9
Nitab4.5_0002639g0020 Nicotiana tabacum HOM05D007847 ORTHO05D009946 2.3e-72 276.6 242 55.0
SEGI_26913 Sequoiadendron giganteum HOM05D007847 ORTHO05D009946 2.9e-70 269.6 291 44.7
Eucgr.F02827 Eucalyptus grandis HOM05D007847 ORTHO05D009946 7.0e-69 265.0 296 47.0
MSTRG.2798 Avicennia marina HOM05D007847 ORTHO05D009946 3.5e-68 262.7 231 55.4
Cpa.g.sc129.54 Carica papaya HOM05D007847 ORTHO05D009946 2.8e-65 253.1 234 54.3
Lj4C169G8 Lonicera japonica HOM05D007847 ORTHO05D009946 1.4e-61 240.7 287 46.3
SGA_v2.0_scaffold121G33081 Striga asiatica HOM05D007847 ORTHO05D009946 4.6e-60 235.7 376 35.9
Pp3c23_15090 Physcomitrium patens HOM05D007847 ORTHO05D009946 8.9e-56 221.5 274 38.7
Lsat_1_v5_gn_2_80401 Lactuca sativa HOM05D007847 ORTHO05D009946 1.2e-55 221.1 183 54.6
HPP92_003710 Vanilla planifolia HOM05D007847 ORTHO05D009946 3.4e-55 219.5 215 50.2
AagrBONN_evm.TU.Sc2ySwM_362.720 Anthoceros agrestis HOM05D007847 ORTHO05D009946 5.8e-55 218.8 301 37.9
Mapoly0084s0053 Marchantia polymorpha HOM05D007847 ORTHO05D009946 5.4e-53 212.2 276 36.6
PGSC0003DMG400017101 Solanum tuberosum HOM05D007847 ORTHO05D009946 1.9e-45 187.2 230 43.9
MD15G1303100 Malus domestica HOM05D007847 ORTHO05D009946 1.7e-38 164.1 130 60.0
MD15G1303200 Malus domestica HOM05D007847 ORTHO05D009946 8.1e-33 145.2 110 63.6
CAN.G82.24 Capsicum annuum HOM05D007847 ORTHO05D009946 5.3e-32 142.5 109 60.6
Sp2g28840 Schrenkiella parvula HOM05D007847 ORTHO05D009946 6.9e-32 142.1 70 91.4
Actinidia36408 Actinidia chinensis HOM05D007847 ORTHO05D009946 7.1e-21 105.5 183 37.2
Cre03.g204801 Chlamydomonas reinhardtii HOM05D007847 ORTHO05D009946 9.3e-21 105.1 261 29.1
CDE02G3555 Ceratophyllum demersum HOM05D007847 ORTHO05D009946 3.8e-14 83.2 60 60.0


User provided reference genes

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