Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 5.1e-219 764.2 413 100.0
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 2.6e-183 645.6 377 94.4
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 3.8e-174 615.1 376 91.5
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 1.3e-145 520.4 316 93.4
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 5.7e-122 441.8 348 76.4
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 7.3e-117 424.9 301 85.4
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 1.6e-116 423.7 322 79.2
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 1.6e-116 423.7 322 79.2
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 1.4e-115 420.6 322 78.6
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 9.8e-114 414.5 320 79.1
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.1e-112 411.0 329 77.2
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.5e-109 399.8 316 78.2
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 7.3e-109 398.3 333 75.1
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 9.5e-109 397.9 334 74.3
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.1e-107 394.4 331 74.0
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 6.2e-100 368.6 305 76.4
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 6.4e-89 332.0 267 74.9
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 4.6e-87 325.9 336 62.2
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 3.1e-83 313.2 341 59.8
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 4.0e-83 312.8 343 60.1
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 1.9e-77 293.9 341 55.1
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 8.1e-76 288.5 341 54.5
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.4e-75 287.7 341 53.1
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 3.1e-75 286.6 341 54.5
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 5.3e-75 285.8 341 53.4
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 6.9e-75 285.4 341 53.7
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 9.0e-75 285.0 341 53.4
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 2.0e-74 283.9 341 54.3
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 3.4e-74 283.1 338 53.3
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 3.4e-74 283.1 342 53.5
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 3.4e-74 283.1 322 54.3
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 1.3e-73 281.2 341 53.1
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.3e-73 281.2 341 53.4
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 1.7e-73 280.8 341 54.0
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 2.9e-73 280.0 341 52.8
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 2.9e-73 280.0 328 53.4
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 6.4e-73 278.9 341 52.5
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.9e-72 277.3 341 50.7
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.9e-72 277.3 320 53.8
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.9e-72 277.3 321 53.3
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.9e-72 277.3 323 52.6
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 2.4e-72 276.9 336 52.4
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 3.2e-72 276.6 341 52.5
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 5.5e-72 275.8 336 53.6
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 7.1e-72 275.4 341 51.9
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 1.2e-71 274.6 341 51.0
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.2e-71 274.6 341 51.9
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 4.6e-71 272.7 336 51.5
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 6.0e-71 272.3 353 49.6
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 6.0e-71 272.3 353 49.6
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 1.0e-70 271.6 341 50.7
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 1.0e-70 271.6 341 51.3
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.3e-70 271.2 353 49.3
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.8e-70 270.8 353 49.3
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.8e-70 270.8 315 53.3
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.3e-70 270.4 353 49.3
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 2.3e-70 270.4 338 51.5
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 3.9e-70 269.6 342 50.3
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 1.5e-69 267.7 338 50.9
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 2.5e-69 266.9 342 50.9
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 4.3e-69 266.2 341 51.0
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 4.3e-69 266.2 341 48.7
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 7.4e-69 265.4 349 49.0
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.3e-68 264.6 315 52.7
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.4e-67 261.2 336 52.7
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.4e-67 261.2 309 53.4
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 1.4e-67 261.2 352 48.6
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.8e-67 260.8 332 49.1
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.2e-66 258.1 323 52.3
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 1.5e-66 257.7 332 50.9
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.4e-66 256.5 336 53.6
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 4.5e-66 256.1 323 51.7
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.0e-65 255.0 329 52.0
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 1.3e-65 254.6 328 50.6
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 3.8e-65 253.1 327 52.9
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 1.1e-64 251.5 280 53.6
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 1.4e-64 251.1 341 49.9
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 1.9e-64 250.8 310 49.4
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.2e-64 250.0 328 49.7
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 4.2e-64 249.6 237 59.5
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 4.2e-64 249.6 329 50.2
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 5.5e-64 249.2 322 50.3
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 7.1e-64 248.8 310 49.0
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 7.1e-64 248.8 315 54.0
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 1.6e-63 247.7 336 49.4
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 3.5e-63 246.5 328 49.4
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 4.6e-63 246.1 237 59.1
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.3e-62 243.8 342 48.2
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 6.7e-62 242.3 341 49.0
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.9e-61 240.7 269 53.5
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 3.3e-61 240.0 232 60.8
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 3.3e-61 240.0 291 51.9
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 5.7e-61 239.2 342 48.0
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 7.4e-61 238.8 241 59.3
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 1.3e-60 238.0 300 50.3
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 1.3e-60 238.0 325 46.2
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 3.7e-60 236.5 241 58.9
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 4.8e-60 236.1 339 47.8
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 6.3e-60 235.7 315 48.3
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 6.3e-60 235.7 320 48.1
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 5.3e-59 232.6 331 49.8
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 9.0e-59 231.9 319 46.4
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 1.2e-58 231.5 260 55.0
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.5e-58 231.1 341 46.9
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 2.0e-58 230.7 318 51.3
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 3.4e-58 229.9 252 55.6
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 1.7e-57 227.6 328 45.1
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 1.1e-56 224.9 327 46.8
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.9e-56 224.2 328 46.6
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.5e-56 223.8 327 45.9
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 6.1e-55 219.2 340 45.6
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 7.9e-55 218.8 308 48.4
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.0e-54 216.9 344 44.5
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 3.3e-53 213.4 341 44.3
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 7.4e-53 212.2 307 45.9
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.8e-52 209.5 341 43.4
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.8e-52 209.5 341 43.4
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 1.1e-51 208.4 333 44.7
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 2.4e-51 207.2 338 44.4
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 5.3e-51 206.1 326 43.6
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.0e-50 204.1 339 42.2
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 5.9e-50 202.6 311 43.1
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 5.9e-50 202.6 326 43.3
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 5.0e-49 199.5 341 41.6
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 8.5e-49 198.7 337 44.5
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 8.5e-49 198.7 391 40.2
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.4e-48 198.0 340 42.6
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 4.2e-48 196.4 314 43.3
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 9.4e-48 195.3 328 42.1
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 9.4e-48 195.3 262 46.6
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.2e-47 194.9 290 45.5
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 1.6e-47 194.5 133 80.5
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.8e-46 191.0 321 40.5
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.5e-45 188.0 288 44.4
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 2.6e-45 187.2 290 43.4
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 1.7e-44 184.5 340 40.6
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 1.7e-44 184.5 318 41.5
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 2.8e-44 183.7 259 48.6
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 4.5e-42 176.4 344 39.0
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.2e-41 174.1 341 39.0
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 3.6e-39 166.8 341 37.8
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 4.7e-39 166.4 194 51.5
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 7.9e-39 165.6 340 40.0
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.0e-38 165.2 251 49.8
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 1.4e-38 164.9 322 39.8
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 1.1e-37 161.8 229 45.9
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 1.5e-37 161.4 264 40.9
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 2.6e-37 160.6 254 41.7
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 1.7e-36 157.9 156 56.4
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 2.2e-36 157.5 320 36.9
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 4.8e-36 156.4 319 37.3
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 6.3e-36 156.0 304 43.8
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.1e-35 155.2 273 43.2
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 1.8e-35 154.5 287 41.5
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.3e-33 148.3 153 56.9
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.7e-33 147.9 247 43.7
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 4.2e-32 143.3 286 35.3
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 1.2e-31 141.7 261 44.1
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 1.0e-30 138.7 164 51.2
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 1.5e-29 134.8 298 40.3
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 1.5e-29 134.8 298 40.3
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 2.8e-28 130.6 238 38.7
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 1.2e-26 125.2 340 32.6
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 2.9e-25 120.6 353 28.9
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 1.2e-23 115.2 127 62.2
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 7.0e-19 99.4 111 61.3
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 4.5e-18 96.7 166 41.6
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 1.9e-16 91.3 307 29.6
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 9.5e-16 89.0 261 35.6
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 4.7e-15 86.7 333 26.4
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 6.8e-14 82.8 58 77.6
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 6.8e-14 82.8 341 30.2
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 8.8e-14 82.4 54 81.5
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 7.8e-10 69.3 132 46.2
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 2.5e-08 64.3 125 43.2
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 1.6e-07 61.6 66 50.0
A06p33460 Brassica napus HOM05D001533 ORTHO05D097084 1.4e-06 58.5 32 90.6
C09p13680 Brassica napus HOM05D001533 ORTHO05D019802 2.3e-06 57.8 125 40.8


User provided reference genes

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