Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 2.3e-301 1038.1 535 100.0
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 4.1e-104 382.9 244 85.2
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 1.2e-92 344.7 187 93.0
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 5.4e-88 329.3 187 90.4
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 8.9e-75 285.4 153 92.8
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 6.0e-47 193.0 111 88.3
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 2.5e-45 187.6 109 86.2
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 2.5e-45 187.6 111 84.7
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 2.5e-45 187.6 109 86.2
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 2.5e-45 187.6 109 86.2
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 2.5e-45 187.6 111 84.7
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 5.6e-45 186.4 111 84.7
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 3.4e-42 177.2 109 80.7
C09p58850 Brassica napus HOM05D008551 ORTHO05D033369 8.7e-38 162.5 82 95.1
BraA03t13743Z Brassica rapa HOM05D008551 ORTHO05D033369 8.7e-38 162.5 82 93.9
BolC9t58729H Brassica oleracea HOM05D008551 ORTHO05D033369 1.5e-37 161.8 82 95.1
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 2.5e-37 161.0 114 75.4
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 1.8e-35 154.8 111 73.9
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 3.1e-35 154.1 114 70.2
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 9.0e-35 152.5 114 69.3
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 1.9e-32 144.8 116 64.7
BcaC01g02968 Brassica carinata HOM05D005442 ORTHO05D006450 1.3e-28 132.1 111 66.7
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 3.7e-28 130.6 109 59.6
BolC3t18040H Brassica oleracea HOM05D008551 ORTHO05D041561 4.2e-24 117.1 70 81.4
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 4.6e-23 113.6 116 53.4
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 4.6e-23 113.6 116 53.4
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 6.1e-23 113.2 116 53.4
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 7.9e-23 112.8 166 43.4
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 3.9e-22 110.5 141 43.3
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 5.1e-22 110.2 111 51.4
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 1.1e-21 109.0 116 50.0
C03p57660 Brassica napus HOM05D008551 ORTHO05D041561 2.0e-21 108.2 70 80.0
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 3.3e-21 107.5 109 51.4
C04p62510 Brassica napus HOM05D008551 ORTHO05D017677 4.3e-21 107.1 86 64.0
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 4.3e-21 107.1 125 48.8
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 4.3e-21 107.1 111 51.4
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 7.4e-21 106.3 110 54.5
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 7.4e-21 106.3 215 38.1
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 9.7e-21 105.9 117 49.6
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 9.7e-21 105.9 116 50.0
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 1.3e-20 105.5 116 50.0
BolC4t27731H Brassica oleracea HOM05D008551 ORTHO05D017677 2.2e-20 104.8 84 63.1
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 2.8e-20 104.4 110 52.7
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 2.8e-20 104.4 109 48.6
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 2.8e-20 104.4 118 50.8
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 2.8e-20 104.4 148 43.9
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 3.7e-20 104.0 109 50.5
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 3.7e-20 104.0 116 50.0
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 4.8e-20 103.6 109 49.5
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 6.3e-20 103.2 122 46.7
A04p25400 Brassica napus HOM05D008551 ORTHO05D017677 1.8e-19 101.7 86 62.8
BraA04t18043Z Brassica rapa HOM05D008551 ORTHO05D017677 1.8e-19 101.7 86 62.8
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 1.8e-19 101.7 119 49.6
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 2.4e-19 101.3 179 37.4
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 4.1e-19 100.5 115 47.0
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 1.2e-18 99.0 142 40.8
C03p57650 Brassica napus HOM05D005442 ORTHO05D006450 2.0e-18 98.2 50 96.0
BolC3t18039H Brassica oleracea HOM05D005442 ORTHO05D006450 2.0e-18 98.2 50 96.0
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 2.0e-18 98.2 115 43.5
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 2.0e-18 98.2 110 51.8
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 2.6e-18 97.8 118 44.9
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 2.6e-18 97.8 115 48.7
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 2.6e-18 97.8 117 47.0
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 2.6e-18 97.8 228 34.6
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 3.4e-18 97.4 102 50.0
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 5.9e-18 96.7 125 44.8
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 7.7e-18 96.3 117 45.3
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 7.7e-18 96.3 116 45.7
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 1.0e-17 95.9 115 45.2
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 1.0e-17 95.9 115 45.2
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 1.3e-17 95.5 109 46.8
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 1.3e-17 95.5 115 44.3
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 1.7e-17 95.1 102 52.9
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 1.7e-17 95.1 135 42.2
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 2.2e-17 94.7 117 45.3
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 2.2e-17 94.7 115 45.2
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 2.9e-17 94.4 128 43.8
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 2.9e-17 94.4 89 50.6
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 6.5e-17 93.2 105 48.6
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 6.5e-17 93.2 119 44.5
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 6.5e-17 93.2 114 50.0
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 8.5e-17 92.8 118 44.1
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 1.4e-16 92.0 115 47.0
A07p30120 Brassica napus HOM05D008551 ORTHO05D013811 1.4e-16 92.0 79 65.8
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 1.4e-16 92.0 108 44.4
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 1.4e-16 92.0 136 42.6
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.4e-16 92.0 136 42.6
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 1.9e-16 91.7 133 42.9
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.5e-16 91.3 136 42.6
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 3.2e-16 90.9 103 49.5
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 4.2e-16 90.5 136 41.9
C03p62250 Brassica napus HOM05D008551 ORTHO05D013811 5.5e-16 90.1 79 65.8
C03p62260 Brassica napus HOM05D008551 ORTHO05D013811 5.5e-16 90.1 79 65.8
BolC3t18487H Brassica oleracea HOM05D008551 ORTHO05D013811 5.5e-16 90.1 79 65.8
BolC3t18490H Brassica oleracea HOM05D008551 ORTHO05D013811 5.5e-16 90.1 79 65.8
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 7.2e-16 89.7 115 41.7
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 1.2e-15 89.0 109 48.6
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 1.6e-15 88.6 98 48.0
BolC3t18488H Brassica oleracea HOM05D008551 ORTHO05D013811 1.6e-15 88.6 79 64.6
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 2.1e-15 88.2 114 43.0
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 2.1e-15 88.2 119 41.2
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 3.6e-15 87.4 114 41.2
A08p05720 Brassica napus HOM05D008551 ORTHO05D017677 4.7e-15 87.0 86 58.1
BraA08t32576Z Brassica rapa HOM05D008551 ORTHO05D017677 4.7e-15 87.0 86 58.1
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 7.9e-15 86.3 112 47.3
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 7.9e-15 86.3 112 47.3
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 7.9e-15 86.3 112 47.3
A04p05180 Brassica napus HOM05D008551 ORTHO05D017677 7.9e-15 86.3 86 57.0
C04p37920 Brassica napus HOM05D008551 ORTHO05D017677 7.9e-15 86.3 86 55.8
BolC4t25366H Brassica oleracea HOM05D008551 ORTHO05D017677 7.9e-15 86.3 86 55.8
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 7.9e-15 86.3 101 47.5
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 1.4e-14 85.5 113 46.0
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 1.4e-14 85.5 129 41.1
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 5.1e-14 83.6 119 44.5
C03p62270 Brassica napus HOM05D008551 ORTHO05D013811 1.1e-13 82.4 69 68.1
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 1.1e-13 82.4 107 46.7
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 1.1e-13 82.4 110 44.5
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.5e-13 82.0 125 40.8
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 2.0e-13 81.6 125 40.8
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 2.6e-13 81.3 108 47.2
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 3.3e-13 80.9 145 41.4
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 5.7e-13 80.1 110 43.6
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 7.4e-13 79.7 158 37.3
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 7.4e-13 79.7 125 40.0
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 1.3e-12 79.0 88 51.1
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.8e-12 77.8 138 39.9
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 2.8e-12 77.8 118 44.1
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 1.8e-11 75.1 110 43.6
BolC6t38580H Brassica oleracea HOM05D008551 ORTHO05D014539 2.0e-10 71.6 58 65.5
BolC6t38581H Brassica oleracea HOM05D008551 ORTHO05D014539 2.0e-10 71.6 58 65.5
BolC6t38582H Brassica oleracea HOM05D008551 ORTHO05D014539 2.0e-10 71.6 58 65.5
C06p34780 Brassica napus HOM05D008551 ORTHO05D014539 2.6e-10 71.2 60 65.0
C06p34750 Brassica napus HOM05D008551 ORTHO05D014539 3.5e-10 70.9 58 65.5
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 4.5e-10 70.5 104 37.5
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 1.7e-09 68.6 57 57.9
C03p62280 Brassica napus HOM05D008551 ORTHO05D014539 3.8e-09 67.4 60 61.7
C06p34790 Brassica napus HOM05D008551 ORTHO05D014539 3.8e-09 67.4 53 67.9
C06p34770 Brassica napus HOM05D008551 ORTHO05D014539 5.0e-09 67.0 60 63.3
C06p34760 Brassica napus HOM05D008551 ORTHO05D014539 1.1e-08 65.9 58 62.1
BraA09t38451Z Brassica rapa HOM05D008551 ORTHO05D013811 1.4e-08 65.5 53 67.9
BraA09t38452Z Brassica rapa HOM05D008551 ORTHO05D013811 1.4e-08 65.5 53 67.9
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 1.4e-08 65.5 101 47.5
BolC3t18489H Brassica oleracea HOM05D008551 ORTHO05D013811 3.2e-08 64.3 56 64.3
BolC6t37442H Brassica oleracea HOM05D008551 ORTHO05D027127 3.2e-08 64.3 86 46.5
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 3.2e-08 64.3 115 35.7
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 4.2e-08 63.9 101 37.6
C03p57680 Brassica napus HOM05D005442 ORTHO05D006450 5.5e-08 63.5 44 79.5
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 5.5e-08 63.5 100 39.0
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 7.2e-08 63.2 65 49.2
C06p22530 Brassica napus HOM05D008551 ORTHO05D027127 1.6e-07 62.0 86 46.5
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 2.7e-07 61.2 97 40.2
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 4.7e-07 60.5 100 39.0
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.0e-06 59.3 99 35.4
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 1.4e-06 58.9 74 44.6
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 2.3e-06 58.2 110 36.4
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 2.3e-06 58.2 99 36.4
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 8.8e-06 56.2 104 34.6
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 8.8e-06 56.2 96 36.5
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 8.8e-06 56.2 92 41.3


User provided reference genes

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