Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p54570 Brassica napus HOM05D006330 ORTHO05D008013 1.6e-169 599.4 306 100.0
BolC3t17744H Brassica oleracea HOM05D006330 ORTHO05D008013 1.6e-169 599.4 306 100.0
BraA03t13548Z Brassica rapa HOM05D006330 ORTHO05D008013 2.8e-166 588.6 306 98.4
A03p44190 Brassica napus HOM05D006330 ORTHO05D008013 8.2e-166 587.0 306 98.0
BcaB08g34453 Brassica carinata HOM05D006330 ORTHO05D008013 1.1e-162 576.6 306 96.1
BcaC01g03225 Brassica carinata HOM05D006330 ORTHO05D008013 4.1e-157 558.1 306 95.1
Sp3g22990 Schrenkiella parvula HOM05D006330 ORTHO05D008013 1.0e-155 553.5 304 91.4
BcaC06g35817 Brassica carinata HOM05D006330 ORTHO05D008013 1.3e-155 553.1 302 92.7
A07p06930 Brassica napus HOM05D006330 ORTHO05D008013 5.0e-155 551.2 302 92.1
BraA07t28484Z Brassica rapa HOM05D006330 ORTHO05D008013 5.0e-155 551.2 302 92.1
BolC7t41520H Brassica oleracea HOM05D006330 ORTHO05D008013 3.2e-154 548.5 303 92.4
C07p10530 Brassica napus HOM05D006330 ORTHO05D008013 2.7e-153 545.4 303 92.1
Thhalv10002617m.g Eutrema salsugineum HOM05D006330 ORTHO05D008013 8.8e-152 540.4 303 90.1
AL3G41590 Arabidopsis lyrata HOM05D006330 ORTHO05D008013 1.2e-143 513.5 304 84.9
CARHR101770 Cardamine hirsuta HOM05D006330 ORTHO05D008013 2.8e-142 508.8 303 83.8
AT3G25470 Arabidopsis thaliana HOM05D006330 ORTHO05D008013 4.8e-142 508.1 304 83.9
Carub.0003s2579 Capsella rubella HOM05D006330 ORTHO05D008013 4.1e-141 505.0 305 84.6
BcaB06g26747 Brassica carinata HOM05D006330 ORTHO05D008013 1.0e-131 473.8 308 81.2
Aa31sc18G40 Aethionema arabicum HOM05D006330 ORTHO05D008013 4.7e-129 464.9 292 80.8
THA.LOC104804704 Tarenaya hassleriana HOM05D006330 ORTHO05D008013 1.0e-120 437.2 310 72.3
Actinidia23802 Actinidia chinensis HOM05D006330 ORTHO05D008013 2.0e-111 406.4 311 68.5
Actinidia34530 Actinidia chinensis HOM05D006330 ORTHO05D008013 1.1e-109 400.6 312 67.3
RcHm_v2.0_Chr6g0282221 Rosa chinensis HOM05D006330 ORTHO05D008013 6.0e-108 394.8 312 67.9
Manes.12G055500 Manihot esculenta HOM05D006330 ORTHO05D008013 2.3e-107 392.9 311 67.8
GSVIVG01001532001 Vitis vinifera HOM05D006330 ORTHO05D008013 3.0e-107 392.5 299 69.6
QL09p047707 Quercus lobata HOM05D006330 ORTHO05D008013 1.5e-106 390.2 308 68.2
Atru.chr6.3528 Acer truncatum HOM05D006330 ORTHO05D008013 3.3e-106 389.0 309 67.0
FAN15G1514 Fragaria x ananassa HOM05D006330 ORTHO05D008013 3.3e-106 389.0 312 67.3
Lalb_Chr12g0210221 Lupinus albus HOM05D006330 ORTHO05D008013 4.3e-106 388.7 302 67.2
Cfa010572 Carpinus fangiana HOM05D006330 ORTHO05D008013 7.3e-106 387.9 302 68.2
MELO3C021126.2 Cucumis melo HOM05D006330 ORTHO05D008013 9.5e-106 387.5 249 77.1
CsaV3_7G026730 Cucumis sativus L. HOM05D006330 ORTHO05D008013 1.2e-105 387.1 249 77.1
Haze_03505 Corylus avellana HOM05D006330 ORTHO05D008013 1.6e-105 386.7 302 68.2
Prupe.8G187200 Prunus persica HOM05D006330 ORTHO05D008013 1.6e-105 386.7 281 71.2
ClCG09G008360 Citrullus lanatus HOM05D006330 ORTHO05D008013 2.8e-105 386.0 279 71.0
FvH4_2g17480 Fragaria vesca HOM05D006330 ORTHO05D008013 2.8e-105 386.0 312 66.7
MBI10_g35385_MAGBIO Magnolia biondii HOM05D006330 ORTHO05D008013 2.8e-105 386.0 298 68.8
Gorai.007G161200 Gossypium raimondii HOM05D006330 ORTHO05D008013 3.6e-105 385.6 304 65.8
EL10Ac5g10587 Beta vulgaris HOM05D006330 ORTHO05D008013 4.7e-105 385.2 297 65.7
CiPaw.13G055600 Carya illinoinensis HOM05D006330 ORTHO05D008013 6.2e-105 384.8 308 66.6
TWI36G1481 Tripterygium wilfordii HOM05D006330 ORTHO05D008013 8.1e-105 384.4 310 65.8
Phvul.010G036400 Phaseolus vulgaris HOM05D006330 ORTHO05D008013 1.1e-104 384.0 314 66.2
Gohir.D11G150300 Gossypium hirsutum HOM05D006330 ORTHO05D008013 1.4e-104 383.6 304 65.5
Duzib133G1456 Durio zibethinus HOM05D006330 ORTHO05D008013 2.3e-104 382.9 308 66.9
PGR044G2230 Punica granatum HOM05D006330 ORTHO05D008013 2.3e-104 382.9 263 73.0
AUR62008069 Chenopodium quinoa HOM05D006330 ORTHO05D008013 3.1e-104 382.5 239 77.4
TAR362G0826 Trochodendron aralioides HOM05D006330 ORTHO05D008013 5.2e-104 381.7 303 68.0
Gohir.A11G143900 Gossypium hirsutum HOM05D006330 ORTHO05D008013 6.8e-104 381.3 304 65.5
Sed0009827 Sechium edule HOM05D006330 ORTHO05D008013 6.8e-104 381.3 264 73.5
CANSAT01G2136 Cannabis sativa HOM05D006330 ORTHO05D008013 8.9e-104 380.9 305 67.5
Eucgr.K02361 Eucalyptus grandis HOM05D006330 ORTHO05D008013 8.9e-104 380.9 274 69.3
Ciclev10015989m.g Citrus clementina HOM05D006330 ORTHO05D008013 2.6e-103 379.4 316 63.9
Aqoxy2G02383 Aquilegia oxysepala HOM05D006330 ORTHO05D008013 5.8e-103 378.3 252 74.6
MD10G1148200 Malus domestica HOM05D006330 ORTHO05D008013 7.5e-103 377.9 312 65.7
FAN24G2605 Fragaria x ananassa HOM05D006330 ORTHO05D008013 9.9e-103 377.5 312 66.0
Nn7g37444 Nelumbo nucifera HOM05D006330 ORTHO05D008013 2.2e-102 376.3 300 68.3
Cc01_g15880 Coffea canephora HOM05D006330 ORTHO05D008013 2.9e-102 375.9 304 66.4
Glyma.07G124200 Glycine max HOM05D006330 ORTHO05D008013 2.9e-102 375.9 304 66.4
Thecc.01G207700 Theobroma cacao HOM05D006330 ORTHO05D008013 2.9e-102 375.9 295 65.8
Medtr8g010130 Medicago truncatula HOM05D006330 ORTHO05D008013 3.7e-102 375.6 299 67.2
Sopen09g015980 Solanum pennellii HOM05D006330 ORTHO05D008013 3.7e-102 375.6 307 66.4
VMungo0331G1131 Vigna mungo HOM05D006330 ORTHO05D008013 3.7e-102 375.6 287 69.7
Psat4g208240 Pisum sativum HOM05D006330 ORTHO05D008013 6.4e-102 374.8 299 67.6
Potri.014G175500 Populus trichocarpa HOM05D006330 ORTHO05D008013 8.3e-102 374.4 295 67.8
Glyma.03G097100 Glycine max HOM05D006330 ORTHO05D008013 1.4e-101 373.6 304 66.4
CDE02G1604 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 7.1e-101 371.3 250 75.2
TPR.G17377 Trifolium pratense HOM05D006330 ORTHO05D008013 9.2e-101 370.9 298 66.4
Ca_23158_v3 Cicer arietinum L. HOM05D006330 ORTHO05D008013 1.6e-100 370.2 270 71.1
ATR0743G141 Amborella trichopoda HOM05D006330 ORTHO05D008013 7.8e-100 367.9 242 76.0
Rhsim01G0247700 Rhododendron simsii HOM05D006330 ORTHO05D008013 1.3e-99 367.1 240 76.2
Sc05g0001630 Simmondsia chinensis HOM05D006330 ORTHO05D008013 6.6e-99 364.8 304 63.8
arahy.Tifrunner.gnm1.ann1.84ZR2Z Arachis hypogaea HOM05D006330 ORTHO05D008013 1.5e-98 363.6 301 65.1
Lsat_1_v5_gn_9_16880 Lactuca sativa HOM05D006330 ORTHO05D008013 1.5e-98 363.6 288 66.0
Lj2C1112G6 Lonicera japonica HOM05D006330 ORTHO05D008013 4.3e-98 362.1 245 73.9
PSO675G8704 Papaver somniferum HOM05D006330 ORTHO05D008013 5.6e-98 361.7 311 63.3
arahy.Tifrunner.gnm1.ann1.3RIK1P Arachis hypogaea HOM05D006330 ORTHO05D008013 1.2e-97 360.5 301 64.8
HPP92_007591 Vanilla planifolia HOM05D006330 ORTHO05D008013 1.2e-97 360.5 240 74.6
MSTRG.21296 Avicennia marina HOM05D006330 ORTHO05D008013 2.1e-97 359.8 293 65.5
SGA_v2.0_scaffold231G43447 Striga asiatica HOM05D006330 ORTHO05D008013 8.1e-97 357.8 303 63.0
SalBow3G0290 Salvia bowleyana HOM05D006330 ORTHO05D008013 1.8e-96 356.7 291 64.3
Migut.D00775 Erythranthe guttata HOM05D006330 ORTHO05D008013 3.1e-96 355.9 296 63.9
HanXRQChr07g0190561 Helianthus annuus HOM05D006330 ORTHO05D008013 4.0e-96 355.5 266 67.7
vmacro14689 Vaccinium macrocarpon HOM05D006330 ORTHO05D008013 5.2e-96 355.1 269 68.4
ECA247G1307 Erigeron canadensis HOM05D006330 ORTHO05D008013 8.9e-96 354.4 244 72.1
Os11g0247400 Oryza sativa ssp. japonica HOM05D006330 ORTHO05D008013 8.9e-96 354.4 250 71.6
DCAR_004774 Daucus carota HOM05D006330 ORTHO05D008013 2.6e-95 352.8 244 70.9
Zm00001eb168340 Zea mays HOM05D006330 ORTHO05D008013 3.4e-95 352.4 248 71.0
Hund09482 Selenicereus undatus HOM05D006330 ORTHO05D008013 8.4e-94 347.8 223 77.6
Pp3c24_1560 Physcomitrium patens HOM05D006330 ORTHO05D008013 2.7e-92 342.8 293 61.8
Hma1.2p1_0161F.1_g071650 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 6.0e-92 341.7 240 72.5
AUR62028646 Chenopodium quinoa HOM05D006330 ORTHO05D008013 1.9e-90 336.7 213 77.5
Mapoly0006s0124 Marchantia polymorpha HOM05D006330 ORTHO05D008013 4.7e-89 332.0 258 64.0
CBR_g60689 Chara braunii HOM05D006330 ORTHO05D008013 4.0e-88 328.9 242 68.6
Ciclev10018050m.g Citrus clementina HOM05D006330 ORTHO05D008013 1.2e-87 327.4 228 73.2
Sabra14G0134300 Salix brachista HOM05D006330 ORTHO05D008013 1.2e-87 327.4 263 66.9
COL.COLO4_34269 Corchorus olitorius HOM05D006330 ORTHO05D008013 3.4e-87 325.9 219 74.9
Lj3g0006219 Lotus japonicus HOM05D006330 ORTHO05D008013 8.7e-83 311.2 248 67.3
SMO141G0006 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 1.9e-82 310.1 255 62.0
Nitab4.5_0000038g0340 Nicotiana tabacum HOM05D006330 ORTHO05D008013 1.3e-81 307.4 253 67.2
Nitab4.5_0010469g0010 Nicotiana tabacum HOM05D006330 ORTHO05D008013 4.8e-81 305.4 254 66.9
Peaxi162Scf00841g00112 Petunia axillaris HOM05D006330 ORTHO05D008013 1.8e-80 303.5 316 57.3
CSS0004044 Camellia sinensis var. sinensis HOM05D006330 ORTHO05D008013 1.5e-79 300.4 239 66.5
SMO186G0001 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 1.5e-79 300.4 246 62.2
Dinv28793 Davidia involucrata HOM05D006330 ORTHO05D008013 2.0e-79 300.1 257 64.2
Oeu049580.1 Olea europaea HOM05D006330 ORTHO05D008013 5.4e-77 292.0 213 69.5
Solyc09g047870.4 Solanum lycopersicum HOM05D006330 ORTHO05D008013 4.6e-76 288.9 245 66.5
MCO07G099 Micromonas commoda HOM05D006330 ORTHO05D008013 2.4e-72 276.6 240 59.2
Cpa.g.sc8.41 Carica papaya HOM05D006330 ORTHO05D008013 2.9e-70 269.6 221 65.6
PSO732G0743 Papaver somniferum HOM05D006330 ORTHO05D008013 3.2e-69 266.2 191 72.3
FAN27G2337 Fragaria x ananassa HOM05D006330 ORTHO05D008013 4.3e-66 255.8 310 50.6
HanXRQChr07g0198371 Helianthus annuus HOM05D006330 ORTHO05D008013 8.4e-62 241.5 183 68.3
Cre10.g428900 Chlamydomonas reinhardtii HOM05D006330 ORTHO05D008013 2.1e-60 236.9 245 54.7
PRCOL_00000451 Prasinoderma coloniale HOM05D006330 ORTHO05D008013 3.1e-56 223.0 293 46.1
CAN.G253.5 Capsicum annuum HOM05D006330 ORTHO05D008013 3.4e-47 193.0 129 73.6
SEGI_37995 Sequoiadendron giganteum HOM05D006330 ORTHO05D008013 1.0e-43 181.4 117 72.6
AagrBONN_evm.TU.Sc2ySwM_368.2380 Anthoceros agrestis HOM05D006330 ORTHO05D008013 1.2e-36 157.9 115 67.0
arahy.Tifrunner.gnm1.ann1.VBTZ6V Arachis hypogaea HOM05D006330 ORTHO05D008013 5.3e-32 142.5 112 62.5
PSO675G8411 Papaver somniferum HOM05D006330 ORTHO05D008013 1.1e-29 134.8 95 65.3
Hma1.2p1_0161F.1_g071660 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 2.3e-27 127.1 82 75.6
CDE04G0367 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 4.5e-23 112.8 92 64.1
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 7.7e-23 112.1 85 65.9
BcaB06g26875 Brassica carinata HOM05D006330 ORTHO05D008013 1.1e-21 108.2 64 90.6
VMungo1383G2211 Vigna mungo HOM05D006330 ORTHO05D434633 2.6e-10 70.5 48 70.8
RcHm_v2.0_Chr5g0065021 Rosa chinensis HOM05D006330 ORTHO05D008013 1.0e-06 58.5 46 63.0


User provided reference genes

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