Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 0.0e+00 1107.8 563 100.0
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 0.0e+00 1096.6 563 98.8
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 0.0e+00 1087.0 563 97.7
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 0.0e+00 1086.6 563 97.5
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 3.5e-311 1070.8 585 94.5
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 5.8e-311 1070.1 563 95.9
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 6.1e-308 1060.1 563 94.8
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 2.0e-306 1055.0 563 94.3
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 2.2e-305 1051.6 563 94.5
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 6.9e-304 1046.6 563 93.8
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 6.5e-302 1040.0 561 94.5
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 1.2e-290 1002.7 564 89.5
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 5.9e-271 937.2 567 84.1
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 8.9e-243 843.6 571 75.5
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 4.9e-241 837.8 569 75.6
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 8.4e-241 837.0 569 75.7
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 3.2e-240 835.1 570 74.7
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.7e-239 832.0 570 74.4
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 2.7e-239 832.0 567 75.1
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 1.1e-237 826.6 569 74.3
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 1.9e-237 825.9 570 74.2
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 1.9e-237 825.9 573 73.1
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 3.3e-237 825.1 564 75.2
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 4.3e-237 824.7 568 75.4
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 4.3e-237 824.7 567 74.8
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 7.3e-237 823.9 569 73.8
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 9.6e-237 823.5 567 74.8
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 3.6e-236 821.6 569 73.5
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 1.8e-235 819.3 569 74.2
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 5.3e-235 817.8 570 73.7
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 3.4e-234 815.1 577 73.3
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 5.8e-234 814.3 572 72.9
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 7.6e-234 813.9 568 74.3
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.3e-233 813.1 568 74.3
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 1.3e-233 813.1 564 74.1
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 1.7e-233 812.8 568 74.3
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 1.4e-232 809.7 573 71.9
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 4.2e-232 808.1 567 73.2
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 2.7e-231 805.4 554 75.6
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 7.8e-231 803.9 567 73.2
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 1.0e-230 803.5 569 71.5
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 2.3e-230 802.4 577 72.8
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 3.0e-230 802.0 565 72.9
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 6.6e-230 800.8 574 71.3
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 1.1e-229 800.0 555 74.6
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 2.5e-229 798.9 562 72.2
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 9.6e-229 797.0 559 74.2
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 2.1e-228 795.8 568 72.0
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 3.6e-228 795.0 573 70.9
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 1.8e-227 792.7 563 71.0
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.8e-227 792.7 571 72.3
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 4.0e-227 791.6 573 70.5
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 2.6e-226 788.9 566 71.9
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 3.4e-226 788.5 552 74.1
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 4.9e-225 784.6 549 73.8
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 6.4e-225 784.3 551 74.4
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 2.1e-223 779.2 630 66.7
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 1.0e-222 776.9 566 71.4
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 1.8e-222 776.2 567 71.3
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 3.0e-222 775.4 566 70.1
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 3.9e-222 775.0 590 68.8
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 3.9e-222 775.0 555 72.3
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 1.1e-221 773.5 557 71.5
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 1.9e-221 772.7 566 70.0
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 7.4e-221 770.8 558 71.1
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 4.8e-220 768.1 551 71.1
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 1.1e-219 766.9 564 69.5
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 6.9e-219 764.2 562 70.1
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 1.5e-218 763.1 568 69.7
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 9.9e-218 760.4 563 70.3
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 1.1e-216 756.9 618 66.5
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 4.2e-216 755.0 572 70.1
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 1.9e-213 746.1 565 68.5
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 5.6e-213 744.6 571 69.7
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 1.3e-212 743.4 565 68.3
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 4.8e-212 741.5 572 68.4
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 6.9e-211 737.6 587 66.8
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 1.7e-209 733.0 557 69.1
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 3.8e-209 731.9 556 69.1
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 5.1e-206 721.5 540 70.7
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 1.0e-201 707.2 565 64.2
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.3e-201 706.8 575 67.0
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 6.5e-201 704.5 562 65.8
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 4.6e-199 698.4 610 63.8
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 7.4e-197 691.0 554 66.8
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 5.3e-195 684.9 588 63.8
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 2.6e-194 682.6 511 68.9
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 2.5e-184 649.4 433 77.4
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 2.6e-173 612.8 572 56.8
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 1.7e-172 610.1 321 98.1
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.7e-170 602.8 444 71.2
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 4.0e-166 589.0 686 50.3
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.5e-165 587.0 573 54.6
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.9e-153 546.2 561 54.0
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 4.7e-151 538.9 568 51.4
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.6e-138 497.3 555 51.2
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 3.7e-103 379.8 272 67.6
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 5.1e-97 359.4 277 67.9
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 7.4e-88 328.9 277 61.7
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 7.2e-83 312.4 225 72.4
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 1.6e-66 258.1 197 67.0
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 9.4e-51 205.7 164 65.2
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 5.2e-49 199.9 302 46.4
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 2.0e-48 198.0 242 43.8
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 3.0e-41 174.1 120 71.7
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 1.5e-40 171.8 116 73.3
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 8.3e-39 166.0 120 69.2
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 2.0e-37 161.4 149 59.1
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 1.2e-34 152.1 129 58.1
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 3.7e-31 140.6 117 63.2
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 8.6e-28 129.4 178 47.2
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 3.4e-24 117.5 174 43.1
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 9.8e-24 115.9 94 61.7
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 4.1e-22 110.5 191 39.8
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 3.6e-18 97.4 123 44.7
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 7.6e-16 89.7 72 63.9
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 6.4e-15 86.7 95 46.3
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.9e-14 85.1 137 42.3
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 6.0e-13 80.1 45 82.2
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 9.6e-11 72.8 57 73.7
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.6e-10 72.0 212 29.7
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 8.1e-10 69.7 129 36.4
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 1.1e-09 69.3 51 74.5
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.1e-09 69.3 176 31.8
Cpa.g.sc131.91 Carica papaya HOM05D006362 ORTHO05D116658 8.9e-09 66.2 37 86.5
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 1.2e-08 65.9 139 37.4
SMO144G0005 Selaginella moellendorffii HOM05D013632 ORTHO05D378182 1.4e-06 58.9 74 43.2


User provided reference genes

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