Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 2.9e-100 368.6 191 100.0
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 3.7e-100 368.2 191 99.5
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 3.7e-100 368.2 191 99.5
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 1.4e-91 339.7 191 91.6
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 2.3e-89 332.4 199 87.9
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 1.5e-88 329.7 198 91.4
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 1.9e-88 329.3 198 90.4
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 9.5e-88 327.0 198 89.9
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 9.5e-88 327.0 198 89.9
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 2.3e-86 322.4 195 90.3
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 7.6e-85 317.4 195 89.7
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 1.7e-84 316.2 198 87.9
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 1.1e-83 313.5 198 87.4
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 4.1e-83 311.6 196 87.8
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 4.1e-83 311.6 196 87.8
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 5.2e-78 294.7 197 84.8
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 2.6e-77 292.4 196 83.2
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 3.8e-76 288.5 193 80.8
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 8.4e-76 287.3 198 81.3
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 5.4e-75 284.6 201 82.6
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 8.7e-73 277.3 196 80.6
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 2.8e-71 272.3 200 80.5
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 2.9e-68 262.3 199 75.4
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 9.3e-67 257.3 192 76.0
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.3e-65 253.4 198 73.2
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.1e-64 250.4 199 73.9
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 2.1e-63 246.1 205 72.7
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 1.4e-62 243.4 218 66.1
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 1.4e-62 243.4 209 67.0
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 2.0e-61 239.6 191 70.2
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 2.6e-61 239.2 208 66.3
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 3.4e-61 238.8 199 67.8
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 4.5e-61 238.4 212 65.1
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 4.5e-61 238.4 212 65.1
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 5.8e-61 238.0 202 68.3
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 7.6e-61 237.7 208 67.3
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 9.9e-61 237.3 203 70.0
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 1.7e-60 236.5 200 68.5
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 1.7e-60 236.5 209 67.0
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.7e-60 236.5 201 68.2
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 2.2e-60 236.1 202 68.3
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 2.9e-60 235.7 193 68.4
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 2.9e-60 235.7 201 68.2
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 2.9e-60 235.7 201 68.2
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 2.9e-60 235.7 193 71.0
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 3.8e-60 235.3 174 74.7
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 3.8e-60 235.3 192 68.8
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 3.8e-60 235.3 209 66.5
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 3.8e-60 235.3 201 68.2
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 3.8e-60 235.3 196 69.9
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 3.8e-60 235.3 203 67.0
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 4.9e-60 235.0 200 67.5
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 4.9e-60 235.0 193 69.9
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 6.4e-60 234.6 196 69.9
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 8.4e-60 234.2 196 71.9
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 8.4e-60 234.2 210 66.7
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 8.4e-60 234.2 193 67.4
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.1e-59 233.8 193 69.4
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.4e-59 233.4 193 68.9
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 1.4e-59 233.4 193 68.9
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 2.4e-59 232.6 212 64.2
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 3.2e-59 232.3 194 70.1
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 4.2e-59 231.9 193 67.4
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 5.5e-59 231.5 175 70.3
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 5.5e-59 231.5 208 63.9
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 5.5e-59 231.5 203 66.0
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 7.1e-59 231.1 193 66.3
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 9.3e-59 230.7 203 69.5
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 9.3e-59 230.7 196 67.9
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 1.2e-58 230.3 203 69.0
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 1.6e-58 229.9 209 65.6
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 2.1e-58 229.6 213 64.8
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 3.5e-58 228.8 214 63.6
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 3.5e-58 228.8 190 68.4
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 3.5e-58 228.8 209 64.1
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 4.6e-58 228.4 193 67.4
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 4.6e-58 228.4 212 63.2
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 6.0e-58 228.0 193 67.9
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 7.9e-58 227.6 212 64.2
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 1.0e-57 227.3 195 65.6
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 1.0e-57 227.3 193 65.8
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 1.3e-57 226.9 212 64.2
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.3e-57 226.9 196 66.3
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 1.3e-57 226.9 178 69.7
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 1.3e-57 226.9 210 63.8
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 1.8e-57 226.5 194 66.0
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 1.8e-57 226.5 198 66.7
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 1.8e-57 226.5 191 66.0
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 3.9e-57 225.3 211 64.5
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 5.1e-57 224.9 212 63.7
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.1e-57 224.9 200 65.5
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.1e-57 224.9 200 65.5
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.1e-57 224.9 200 65.5
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 5.1e-57 224.9 165 74.5
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 5.1e-57 224.9 212 63.2
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 6.7e-57 224.6 196 66.3
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 6.7e-57 224.6 210 63.8
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 8.7e-57 224.2 206 64.6
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.1e-56 223.8 203 68.0
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 1.5e-56 223.4 198 67.2
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 1.5e-56 223.4 157 76.4
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 1.9e-56 223.0 202 64.9
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 3.3e-56 222.2 193 67.4
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 7.4e-56 221.1 198 63.6
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 1.3e-55 220.3 137 82.5
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 1.6e-55 219.9 211 63.5
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 2.8e-55 219.2 211 63.0
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 3.7e-55 218.8 202 64.4
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 3.7e-55 218.8 196 65.8
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 4.8e-55 218.4 203 63.5
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 6.2e-55 218.0 194 64.9
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 1.4e-54 216.9 219 60.3
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 1.4e-54 216.9 204 62.3
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 3.1e-54 215.7 203 62.6
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 3.1e-54 215.7 211 62.1
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 4.0e-54 215.3 193 65.8
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 1.2e-53 213.8 195 63.1
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 1.5e-53 213.4 173 68.8
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 2.0e-53 213.0 194 64.4
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 4.5e-53 211.8 104 98.1
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 1.0e-52 210.7 115 90.4
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 1.0e-52 210.7 199 63.3
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 1.3e-52 210.3 181 63.5
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 2.2e-52 209.5 104 97.1
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 2.9e-52 209.1 181 62.4
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 3.8e-52 208.8 104 96.2
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 6.5e-52 208.0 192 65.1
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 1.1e-51 207.2 104 97.1
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 1.1e-51 207.2 111 89.2
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 1.9e-51 206.5 104 95.2
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 1.9e-51 206.5 193 62.2
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 4.2e-51 205.3 117 82.1
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 6.0e-50 201.4 176 66.5
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 3.0e-49 199.1 112 88.4
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 1.4e-46 190.3 103 92.2
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 2.4e-46 189.5 100 89.0
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 3.2e-43 179.1 104 80.8
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 9.3e-43 177.6 208 53.4
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.8e-41 173.3 102 80.4
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 3.0e-41 172.6 170 56.5
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 1.1e-40 170.6 198 52.5
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.5e-40 170.2 170 57.6
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 2.6e-37 159.5 101 75.2
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 3.8e-36 155.6 135 56.3
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 6.1e-34 148.3 149 59.7
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 8.8e-33 144.4 115 60.0
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 5.3e-30 135.2 99 63.6
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 1.3e-23 114.0 100 52.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 2.2e-20 103.2 125 43.2
BolC1t05144H Brassica oleracea HOM05D004814 ORTHO05D005778 3.8e-20 102.4 102 66.7
vmacro17432 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 5.2e-09 65.5 192 35.4


User provided reference genes

Program Settings