Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 2206.4 1118 100.0
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 2119.4 1133 95.9
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1907.1 1029 94.7
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1891.7 1013 95.7
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1783.5 1020 90.0
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1754.6 1016 88.2
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1737.2 1019 87.4
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1725.7 1019 86.8
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1716.0 1019 86.5
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1712.6 1018 86.7
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1704.1 1025 85.4
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1692.2 903 95.6
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1679.5 1024 85.0
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1677.5 1050 83.5
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1676.0 1024 84.8
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1674.4 1023 84.7
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1660.2 1019 84.2
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1654.8 1020 84.2
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1577.8 1023 80.8
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1486.5 1023 76.2
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1453.0 1030 75.0
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1350.5 1032 69.1
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1347.0 1009 70.0
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1344.7 1030 68.9
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1342.4 1031 69.5
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1341.6 992 71.1
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1340.1 1024 69.3
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1328.2 1035 68.3
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1328.2 1035 68.4
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1325.5 1041 67.7
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1324.7 1031 68.8
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1321.2 1016 69.1
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1320.4 1031 68.5
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1320.1 1033 67.3
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1319.3 1034 67.6
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1318.5 1037 68.4
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1315.8 1040 67.5
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1315.4 1033 68.0
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1315.1 1032 67.4
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1313.9 1004 68.6
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1313.1 1005 68.7
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1312.0 1027 67.7
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1310.4 1010 69.1
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1308.9 1011 69.5
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1308.5 1040 67.2
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1306.2 1005 68.3
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1305.8 1031 69.2
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1305.8 1034 68.0
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1305.0 1029 68.1
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1304.7 1025 68.3
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1302.7 1012 67.8
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1301.2 1039 66.7
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1296.6 1029 68.7
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1293.5 973 68.9
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1292.7 1080 64.5
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1291.9 1009 68.4
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1289.6 1046 66.4
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1288.5 1036 67.4
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1286.2 1037 67.3
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1284.6 1047 65.4
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1283.5 1021 67.0
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1281.9 1036 66.9
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1281.9 1035 66.5
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1281.5 1014 67.5
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1279.2 1033 66.2
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1276.5 1026 67.6
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1276.2 1024 66.3
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1275.0 1036 66.3
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1274.6 1023 65.9
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1274.2 1041 66.2
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1271.5 1026 66.7
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1268.4 1017 66.9
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1267.7 1039 65.3
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1266.9 1051 65.4
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1266.1 1029 65.8
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1266.1 1028 66.1
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1266.1 1025 67.1
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1265.0 1013 66.5
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1264.2 1069 64.7
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1253.8 1029 65.2
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1253.4 1023 66.1
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1251.9 1006 67.1
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1251.9 1023 65.8
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1250.7 1010 66.7
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1250.7 1028 65.1
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1250.7 1028 65.1
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1247.6 1039 66.1
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1247.6 1034 65.7
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1246.1 1017 66.4
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1243.4 1010 66.0
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1242.3 1064 62.2
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1241.9 998 67.0
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1232.2 1026 63.5
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1228.4 1052 64.1
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1219.1 1048 64.1
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1218.0 1002 64.8
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1217.6 935 67.9
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1216.8 1029 63.2
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1210.3 1015 65.0
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1209.5 1024 63.4
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1209.1 1015 64.4
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1202.2 1024 63.8
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1201.8 1024 63.6
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1199.1 1013 62.7
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1194.5 1027 63.3
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1192.9 1035 63.4
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1192.6 1018 64.2
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1189.1 1011 63.1
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1184.1 932 68.9
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1179.9 888 71.3
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1169.8 891 70.4
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1166.0 1020 62.3
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1165.2 994 64.4
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1159.8 1013 63.7
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1151.0 1032 60.9
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1137.5 1027 61.1
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1133.6 1034 60.9
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1132.1 1014 60.4
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1103.6 1024 59.9
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1095.1 1011 59.7
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1075.5 996 58.3
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 3.8e-311 1071.6 1030 60.2
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 1.5e-310 1069.7 1007 58.6
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 3.4e-310 1068.5 1036 59.2
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 2.9e-309 1065.4 927 62.4
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 8.1e-304 1047.3 1078 55.5
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 1.4e-303 1046.6 1003 58.0
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.2e-301 1039.3 1029 56.3
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.1e-272 943.0 894 57.0
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 1.1e-268 930.6 997 55.5
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 1.2e-267 927.2 1042 54.1
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 4.5e-262 908.7 816 60.5
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 8.2e-256 887.9 788 62.1
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.4e-242 844.0 985 49.9
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.3e-237 827.4 974 47.8
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 2.5e-236 823.2 1059 47.6
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.2e-236 822.4 973 48.0
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 4.4e-233 812.4 721 63.0
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.0e-229 801.2 738 61.9
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 5.4e-223 778.9 1030 45.0
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 4.3e-212 742.7 836 50.0
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.2e-206 724.5 811 50.9
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 4.7e-195 686.0 399 86.7
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.2e-192 677.2 913 45.7
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 1.5e-185 654.4 653 56.0
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.1e-178 631.7 720 56.0
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 3.9e-165 586.6 824 46.8
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 4.3e-164 583.2 630 53.0
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.3e-160 571.6 982 39.2
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 3.8e-144 516.9 608 49.7
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 8.2e-139 499.2 589 49.4
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 1.1e-138 498.8 653 47.2
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 9.1e-130 469.2 1162 32.1
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 2.9e-112 411.0 642 42.8
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 6.8e-101 373.2 539 42.9
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.6e-86 325.5 285 63.9
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 2.8e-78 298.1 168 93.5
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 4.4e-76 290.8 160 96.2
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 6.4e-75 287.0 311 55.9
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 6.0e-73 280.4 270 58.9
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 8.7e-72 276.6 245 64.5
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 4.3e-63 247.7 623 31.9
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.3e-59 236.1 253 55.3
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.6e-52 211.8 220 51.8
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 2.6e-52 211.8 920 24.7
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 2.1e-49 202.2 527 30.4
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.4e-45 188.7 219 44.7
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.0e-43 183.3 151 56.3
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 6.9e-29 134.0 165 47.3
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.3e-27 129.8 166 45.2
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.6e-25 122.9 129 48.1
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 5.9e-20 104.4 114 45.6
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.7e-19 102.8 80 61.2
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.7e-19 102.8 80 61.2
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 1.1e-13 83.6 60 71.7
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 2.4e-13 82.4 63 68.3
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 1.7e-11 76.3 64 57.8


User provided reference genes

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