Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p42300 Brassica napus HOM05D003528 ORTHO05D015900 0.0e+00 1919.4 1041 100.0
BolC3t16504H Brassica oleracea HOM05D003528 ORTHO05D015900 0.0e+00 1728.4 1033 91.2
A03p34760 Brassica napus HOM05D003528 ORTHO05D015900 0.0e+00 1607.8 1041 85.4
BraA03t12657Z Brassica rapa HOM05D003528 ORTHO05D015900 0.0e+00 1589.7 1045 86.4
Sp3g05600 Schrenkiella parvula HOM05D003528 ORTHO05D015900 0.0e+00 1211.8 1084 64.4
Thhalv10019983m.g Eutrema salsugineum HOM05D003528 ORTHO05D015900 6.2e-290 1001.1 1090 56.9
CARHR081190 Cardamine hirsuta HOM05D003528 ORTHO05D015900 1.1e-254 884.0 1095 52.1
AT3G66652 Arabidopsis thaliana HOM05D003528 ORTHO05D015900 3.7e-250 869.0 1058 53.0
AL3G17720 Arabidopsis lyrata HOM05D003528 ORTHO05D015900 1.4e-244 850.5 1067 51.7
Carub.0003s0612 Capsella rubella HOM05D003528 ORTHO05D015900 4.5e-232 808.9 1074 49.5
THA.LOC104827097 Tarenaya hassleriana HOM05D003528 ORTHO05D015900 1.2e-96 359.0 1159 31.9
Potri.010G145150 Populus trichocarpa HOM05D007976 ORTHO05D002678 1.1e-20 106.7 382 31.2
COL.COLO4_34619 Corchorus olitorius HOM05D007976 ORTHO05D002678 3.2e-20 105.1 331 31.4
Manes.03G204700 Manihot esculenta HOM05D007976 ORTHO05D002678 7.9e-19 100.5 312 29.8
Duzib212G0249 Durio zibethinus HOM05D007976 ORTHO05D002678 3.9e-18 98.2 283 32.9
TWI09G1545 Tripterygium wilfordii HOM05D007976 ORTHO05D002678 1.5e-17 96.3 1072 22.5
Haze_01305 Corylus avellana HOM05D007976 ORTHO05D002678 2.5e-17 95.5 279 29.0
Nn4g25570 Nelumbo nucifera HOM05D007976 ORTHO05D002678 2.2e-16 92.4 150 36.0
Nitab4.5_0013613g0030 Nicotiana tabacum HOM05D007976 ORTHO05D002678 1.8e-15 89.4 271 31.0
HanXRQChr05g0146071 Helianthus annuus HOM05D007976 ORTHO05D002678 1.5e-14 86.3 276 27.9
Nitab4.5_0002150g0130 Nicotiana tabacum HOM05D007976 ORTHO05D002678 1.5e-14 86.3 404 26.5
QL06p012216 Quercus lobata HOM05D007976 ORTHO05D002678 3.4e-14 85.1 1115 22.6
Dinv44288 Davidia involucrata HOM05D007976 ORTHO05D002678 1.7e-13 82.8 249 28.9
CSS0029168 Camellia sinensis var. sinensis HOM05D007976 ORTHO05D002678 2.2e-13 82.4 593 24.1
Sopen12g033960 Solanum pennellii HOM05D007976 ORTHO05D002678 2.9e-13 82.0 319 30.1
Prupe.1G117900 Prunus persica HOM05D007976 ORTHO05D002678 3.8e-13 81.6 313 29.7
Gohir.A10G172100 Gossypium hirsutum HOM05D007976 ORTHO05D002678 6.5e-13 80.9 314 26.1
GSVIVG01034996001 Vitis vinifera HOM05D007976 ORTHO05D002678 1.4e-12 79.7 527 23.3
Ca_21441_v3 Cicer arietinum L. HOM05D007976 ORTHO05D002678 2.5e-12 79.0 411 26.3
Phvul.006G117800 Phaseolus vulgaris HOM05D007976 ORTHO05D002678 2.5e-12 79.0 468 25.9
CAN.G484.60 Capsicum annuum HOM05D007976 ORTHO05D002678 5.5e-12 77.8 324 30.6
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 7.2e-12 77.4 1022 22.8
Thecc.04G300200 Theobroma cacao HOM05D007976 ORTHO05D002678 1.2e-11 76.6 1096 22.2
Gohir.D07G030200 Gossypium hirsutum HOM05D003779 ORTHO05D002678 2.1e-11 75.9 199 27.6
Sc08g0004970 Simmondsia chinensis HOM05D003779 ORTHO05D002678 2.1e-11 75.9 191 27.7
Gohir.D13G191400 Gossypium hirsutum HOM05D003779 ORTHO05D002678 6.1e-11 74.3 210 28.1
PSO170G4144 Papaver somniferum HOM05D007976 ORTHO05D002678 6.1e-11 74.3 300 29.3
Solyc12g099280.2 Solanum lycopersicum HOM05D007976 ORTHO05D002678 6.1e-11 74.3 324 28.4
Gorai.001G031400 Gossypium raimondii HOM05D003779 ORTHO05D002678 1.0e-10 73.6 199 27.1
Dinv42884 Davidia involucrata HOM05D003779 ORTHO05D002678 1.4e-10 73.2 167 30.5
Dinv43216 Davidia involucrata HOM05D003779 ORTHO05D002678 1.4e-10 73.2 167 30.5
Prupe.7G260100 Prunus persica HOM05D003779 ORTHO05D002678 1.4e-10 73.2 156 32.1
PGSC0003DMG400004621 Solanum tuberosum HOM05D007976 ORTHO05D002678 1.4e-10 73.2 323 29.4
AUR62016206 Chenopodium quinoa HOM05D007976 ORTHO05D002678 1.8e-10 72.8 160 30.6
EL10Ac8g18849 Beta vulgaris HOM05D003779 ORTHO05D002678 2.3e-10 72.4 155 31.0
TAR365G0148 Trochodendron aralioides HOM05D007976 ORTHO05D002678 2.3e-10 72.4 406 25.4
COL.COLO4_18776 Corchorus olitorius HOM05D003779 ORTHO05D002678 3.0e-10 72.0 199 27.6
ECA246G2174 Erigeron canadensis HOM05D007976 ORTHO05D002678 3.0e-10 72.0 347 27.4
Cc03_g00860 Coffea canephora HOM05D007976 ORTHO05D002678 3.9e-10 71.6 297 30.0
TWI63G1714 Tripterygium wilfordii HOM05D003779 ORTHO05D002678 3.9e-10 71.6 141 29.8
VMungo0540G0247 Vigna mungo HOM05D007976 ORTHO05D002678 3.9e-10 71.6 467 25.9
Medtr4g122070 Medicago truncatula HOM05D007976 ORTHO05D002678 5.1e-10 71.2 1017 23.0
CSS0005827 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 1.1e-09 70.1 165 29.1
PSO357G0305 Papaver somniferum HOM05D007976 ORTHO05D002678 1.5e-09 69.7 289 28.0
Potri.006G187400 Populus trichocarpa HOM05D003779 ORTHO05D002678 1.5e-09 69.7 77 42.9
Glyma.09G035800 Glycine max HOM05D007976 ORTHO05D002678 2.0e-09 69.3 348 25.6
arahy.Tifrunner.gnm1.ann1.MXR4WM Arachis hypogaea HOM05D003779 ORTHO05D002678 3.3e-09 68.6 177 28.8
arahy.Tifrunner.gnm1.ann1.Y7PKX5 Arachis hypogaea HOM05D003779 ORTHO05D002678 3.3e-09 68.6 177 28.8
Glyma.15G140800 Glycine max HOM05D007976 ORTHO05D002678 3.3e-09 68.6 325 27.1
Sabra10G0112100 Salix brachista HOM05D007976 ORTHO05D002678 3.3e-09 68.6 1051 23.0
Hund11973 Selenicereus undatus HOM05D007976 ORTHO05D002678 3.3e-09 68.6 180 27.8
TAR625G1002 Trochodendron aralioides HOM05D003779 ORTHO05D002678 3.3e-09 68.6 204 26.5
MBI15_g10629_MAGBIO Magnolia biondii HOM05D003779 ORTHO05D002678 4.4e-09 68.2 253 26.9
Phvul.003G157600 Phaseolus vulgaris HOM05D003779 ORTHO05D002678 4.4e-09 68.2 155 27.7
vmacro08047 Vaccinium macrocarpon HOM05D007976 ORTHO05D002678 4.4e-09 68.2 254 27.6
Aqoxy5G03581 Aquilegia oxysepala HOM05D007976 ORTHO05D002678 5.7e-09 67.8 539 23.2
Nitab4.5_0008534g0010 Nicotiana tabacum HOM05D003779 ORTHO05D002678 5.7e-09 67.8 92 35.9
Peaxi162Scf00347g00821 Petunia axillaris HOM05D003779 ORTHO05D002678 5.7e-09 67.8 92 35.9
SHI02625 Sapria himalayana HOM05D003779 ORTHO05D002678 5.7e-09 67.8 122 34.4
TPR.G829 Trifolium pratense HOM05D007976 ORTHO05D002678 5.7e-09 67.8 65 41.5
Oeu026546.1 Olea europaea HOM05D003779 ORTHO05D002678 7.4e-09 67.4 92 35.9
TAR636G1028 Trochodendron aralioides HOM05D003779 ORTHO05D002678 7.4e-09 67.4 156 28.2
VMungo1215G0704 Vigna mungo HOM05D003779 ORTHO05D002678 7.4e-09 67.4 156 26.9
Actinidia23546 Actinidia chinensis HOM05D003779 ORTHO05D002678 9.7e-09 67.0 238 25.6
Cfa015318 Carpinus fangiana HOM05D007976 ORTHO05D002678 9.7e-09 67.0 1111 21.5
ATR0693G160 Amborella trichopoda HOM05D003779 ORTHO05D002678 1.3e-08 66.6 260 26.5
AUR62039282 Chenopodium quinoa HOM05D007976 ORTHO05D002678 1.3e-08 66.6 330 24.8
Nn8g39802 Nelumbo nucifera HOM05D003779 ORTHO05D002678 1.3e-08 66.6 188 26.1
SHI00143 Sapria himalayana HOM05D003779 ORTHO05D002678 1.3e-08 66.6 56 57.1
Gohir.A07G026300 Gossypium hirsutum HOM05D003779 ORTHO05D002678 1.7e-08 66.2 292 25.7
Lj6g0022686 Lotus japonicus HOM05D003779 ORTHO05D002678 1.7e-08 66.2 109 34.9
RcHm_v2.0_Chr2g0085981 Rosa chinensis HOM05D003779 ORTHO05D002678 1.7e-08 66.2 109 33.9
Actinidia04285 Actinidia chinensis HOM05D003779 ORTHO05D002678 2.2e-08 65.9 135 28.9
Aqoxy7G03464 Aquilegia oxysepala HOM05D003779 ORTHO05D002678 2.2e-08 65.9 159 28.9
Lalb_Chr08g0233951 Lupinus albus HOM05D003779 ORTHO05D002678 2.2e-08 65.9 182 28.6
CDE02G3961 Ceratophyllum demersum HOM05D003779 ORTHO05D002678 2.8e-08 65.5 49 53.1
HPP92_020551 Vanilla planifolia HOM05D003779 ORTHO05D002678 3.7e-08 65.1 92 33.7
Actinidia40371 Actinidia chinensis HOM05D007976 ORTHO05D002678 4.8e-08 64.7 453 24.5
CANSAT11G0231 Cannabis sativa HOM05D003779 ORTHO05D002678 4.8e-08 64.7 92 33.7
Dinv41398 Davidia involucrata HOM05D003779 ORTHO05D002678 4.8e-08 64.7 92 35.9
Nitab4.5_0001201g0070 Nicotiana tabacum HOM05D003779 ORTHO05D002678 4.8e-08 64.7 92 34.8
Pp3c7_2840 Physcomitrium patens HOM05D003779 ORTHO05D002678 4.8e-08 64.7 93 33.3
Duzib168G2294 Durio zibethinus HOM05D003779 ORTHO05D002678 6.3e-08 64.3 196 27.6
Pp3c11_22610 Physcomitrium patens HOM05D003779 ORTHO05D002678 6.3e-08 64.3 95 32.6
Rhsim01G0036200 Rhododendron simsii HOM05D003779 ORTHO05D002678 6.3e-08 64.3 91 34.1
FAN23G1864 Fragaria x ananassa HOM05D003779 ORTHO05D002678 8.2e-08 63.9 159 28.9
FAN28G2365 Fragaria x ananassa HOM05D003779 ORTHO05D002678 8.2e-08 63.9 159 28.9
Lsat_1_v5_gn_5_91481 Lactuca sativa HOM05D003779 ORTHO05D002678 8.2e-08 63.9 77 39.0
PGR102G2779 Punica granatum HOM05D003779 ORTHO05D002678 8.2e-08 63.9 231 26.8
SalBow1G3877 Salvia bowleyana HOM05D003779 ORTHO05D002678 8.2e-08 63.9 78 38.5
SalBow1G6151 Salvia bowleyana HOM05D003779 ORTHO05D002678 8.2e-08 63.9 92 32.6
GSVIVG01023597001 Vitis vinifera HOM05D003779 ORTHO05D002678 8.2e-08 63.9 196 28.1
FvH4_1g01180 Fragaria vesca HOM05D003779 ORTHO05D002678 1.1e-07 63.5 159 28.9
FAN19G1766 Fragaria x ananassa HOM05D003779 ORTHO05D002678 1.1e-07 63.5 159 28.9
Gorai.011G199900 Gossypium raimondii HOM05D007976 ORTHO05D002678 1.1e-07 63.5 379 24.3
HanXRQChr12g0357201 Helianthus annuus HOM05D003779 ORTHO05D002678 1.4e-07 63.2 77 39.0
Mapoly0032s0123 Marchantia polymorpha HOM05D003779 ORTHO05D002678 1.4e-07 63.2 93 33.3
Lj9C714G7 Lonicera japonica HOM05D003779 ORTHO05D002678 1.8e-07 62.8 241 25.3
Oeu050477.1 Olea europaea HOM05D003779 ORTHO05D002678 1.8e-07 62.8 148 27.7
Psat6g117320 Pisum sativum HOM05D007976 ORTHO05D002678 2.4e-07 62.4 235 27.2
Sabra06G0142300 Salix brachista HOM05D003779 ORTHO05D002678 3.1e-07 62.0 214 31.3
Sopen07g001470 Solanum pennellii HOM05D003779 ORTHO05D002678 3.1e-07 62.0 204 25.5
vmacro06092 Vaccinium macrocarpon HOM05D003779 ORTHO05D002678 3.1e-07 62.0 109 33.0
Migut.J01330 Erythranthe guttata HOM05D003779 ORTHO05D002678 4.1e-07 61.6 90 32.2
CiPaw.16G114900 Carya illinoinensis HOM05D003779 ORTHO05D002678 5.3e-07 61.2 302 25.8
Lalb_Chr15g0089181 Lupinus albus HOM05D007976 ORTHO05D002678 5.3e-07 61.2 165 30.3
RcHm_v2.0_Chr4g0425101 Rosa chinensis HOM05D007976 ORTHO05D002678 5.3e-07 61.2 93 39.8
Ca_14533_v3 Cicer arietinum L. HOM05D003779 ORTHO05D002678 9.1e-07 60.5 309 25.9
Duzib187G1590 Durio zibethinus HOM05D003779 ORTHO05D002678 9.1e-07 60.5 162 29.0
SMO115G0353 Selaginella moellendorffii HOM05D003779 ORTHO05D002678 9.1e-07 60.5 49 44.9
SGA_v2.0_scaffold21G09645 Striga asiatica HOM05D003779 ORTHO05D002678 9.1e-07 60.5 75 33.3
CAN.G1116.7 Capsicum annuum HOM05D003779 ORTHO05D002678 1.2e-06 60.1 161 29.2
DCAR_015453 Daucus carota HOM05D003779 ORTHO05D002678 1.2e-06 60.1 63 42.9
Peaxi162Scf00120g00024 Petunia axillaris HOM05D007976 ORTHO05D002678 1.2e-06 60.1 515 23.3
AagrBONN_evm.TU.Sc2ySwM_344.140 Anthoceros agrestis HOM05D003779 ORTHO05D002678 1.5e-06 59.7 49 46.9
PSO170G5719 Papaver somniferum HOM05D003779 ORTHO05D002678 1.5e-06 59.7 246 25.2
Cpa.g.sc46.127 Carica papaya HOM05D003779 ORTHO05D002678 2.6e-06 58.9 190 28.4
MD02G1009900 Malus domestica HOM05D003779 ORTHO05D002678 2.6e-06 58.9 523 24.7
EL10Ac3g05506 Beta vulgaris HOM05D007976 ORTHO05D002678 3.4e-06 58.5 225 28.9
Psat1g022120 Pisum sativum HOM05D003779 ORTHO05D002678 3.4e-06 58.5 203 28.1
Sabra06G0143300 Salix brachista HOM05D003779 ORTHO05D002678 3.4e-06 58.5 234 30.8
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 3.4e-06 58.5 37 59.5
Solyc07g005320.3 Solanum lycopersicum HOM05D003779 ORTHO05D002678 7.7e-06 57.4 155 27.1


User provided reference genes

Program Settings