Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p41950 Brassica napus HOM05D003236 ORTHO05D003620 1.5e-98 362.8 187 100.0
BcaC05g30061 Brassica carinata HOM05D003236 ORTHO05D003620 2.9e-12 76.3 37 97.3
Sp3g05010 Schrenkiella parvula HOM05D003236 ORTHO05D003620 2.9e-12 76.3 37 97.3
A05p41940 Brassica napus HOM05D003236 ORTHO05D003620 3.7e-12 75.9 37 94.6
C05p61190 Brassica napus HOM05D003236 ORTHO05D003620 3.7e-12 75.9 37 94.6
BolC5t34779H Brassica oleracea HOM05D003236 ORTHO05D003620 3.7e-12 75.9 37 94.6
BraA05t22916Z Brassica rapa HOM05D003236 ORTHO05D003620 3.7e-12 75.9 37 94.6
Thhalv10021124m.g Eutrema salsugineum HOM05D003236 ORTHO05D003620 3.7e-12 75.9 37 94.6
Aa31LG5G16550 Aethionema arabicum HOM05D003236 ORTHO05D003620 8.4e-12 74.7 37 94.6
CARHR080570 Cardamine hirsuta HOM05D003236 ORTHO05D003620 8.4e-12 74.7 37 91.9
Carub.0003s0550 Capsella rubella HOM05D003236 ORTHO05D003620 1.1e-11 74.3 37 89.2
AT3G06060 Arabidopsis thaliana HOM05D003236 ORTHO05D003620 7.1e-11 71.6 37 86.5
Carub.0006s1753 Capsella rubella HOM05D003236 ORTHO05D003620 4.6e-10 68.9 37 81.1
AL6G30650 Arabidopsis lyrata HOM05D003236 ORTHO05D003620 1.3e-09 67.4 37 81.1
Thhalv10014360m.g Eutrema salsugineum HOM05D003236 ORTHO05D003620 1.3e-09 67.4 37 81.1
THA.LOC104822305 Tarenaya hassleriana HOM05D003236 ORTHO05D003620 2.3e-09 66.6 37 78.4
Sp6g25180 Schrenkiella parvula HOM05D003236 ORTHO05D008795 3.0e-09 66.2 37 78.4
THA.LOC104818806 Tarenaya hassleriana HOM05D003236 ORTHO05D003620 3.0e-09 66.2 37 75.7
BcaB08g36592 Brassica carinata HOM05D003236 ORTHO05D003620 3.9e-09 65.9 37 78.4
BcaB08g36593 Brassica carinata HOM05D003236 ORTHO05D003620 3.9e-09 65.9 37 78.4
BcaC04g18588 Brassica carinata HOM05D003236 ORTHO05D003620 3.9e-09 65.9 37 78.4
C09p57040 Brassica napus HOM05D003236 ORTHO05D003620 3.9e-09 65.9 37 78.4
CsaV3_3G013580 Cucumis sativus L. HOM05D003236 ORTHO05D003620 5.1e-09 65.5 37 75.7
ClCG05G011190 Citrullus lanatus HOM05D003236 ORTHO05D003620 6.6e-09 65.1 37 75.7
MELO3C006553.2 Cucumis melo HOM05D003236 ORTHO05D003620 6.6e-09 65.1 37 75.7
MBI17_g13566_MAGBIO Magnolia biondii HOM05D003236 ORTHO05D003620 6.6e-09 65.1 37 81.1
Thecc.04G030700 Theobroma cacao HOM05D003236 ORTHO05D003620 6.6e-09 65.1 37 75.7
Ah.10g034980 Amaranthus hybridus HOM05D003236 ORTHO05D003620 8.6e-09 64.7 37 75.7
AT5G19200 Arabidopsis thaliana HOM05D003236 ORTHO05D003620 1.9e-08 63.5 37 75.7
Sc13g0004130 Simmondsia chinensis HOM05D003236 ORTHO05D003620 1.9e-08 63.5 37 73.0
Lalb_Chr15g0087401 Lupinus albus HOM05D003236 ORTHO05D003620 4.3e-08 62.4 37 73.0
COL.COLO4_08743 Corchorus olitorius HOM05D003236 ORTHO05D003620 5.6e-08 62.0 37 67.6
HanXRQChr01g0028881 Helianthus annuus HOM05D003236 ORTHO05D003620 5.6e-08 62.0 37 70.3
PGR142G1056 Punica granatum HOM05D003236 ORTHO05D003620 5.6e-08 62.0 37 73.0
arahy.Tifrunner.gnm1.ann1.4929ND Arachis hypogaea HOM05D003236 ORTHO05D003620 7.3e-08 61.6 37 70.3
arahy.Tifrunner.gnm1.ann1.IC6NPA Arachis hypogaea HOM05D000043 ORTHO05D001371 7.3e-08 61.6 37 70.3
Lj6g0023183 Lotus japonicus HOM05D003236 ORTHO05D003620 7.3e-08 61.6 37 73.0
Ciclev10005413m.g Citrus clementina HOM05D003236 ORTHO05D003620 9.6e-08 61.2 37 70.3
RcHm_v2.0_Chr4g0417501 Rosa chinensis HOM05D003236 ORTHO05D003620 9.6e-08 61.2 37 70.3
Atru.chr4.2535 Acer truncatum HOM05D003236 ORTHO05D003620 1.2e-07 60.8 37 67.6
CiPaw.01G161600 Carya illinoinensis HOM05D003236 ORTHO05D003620 1.2e-07 60.8 37 70.3
CiPaw.02G093600 Carya illinoinensis HOM05D003236 ORTHO05D003620 1.2e-07 60.8 37 70.3
ClCG05G005330 Citrullus lanatus HOM05D003236 ORTHO05D003620 1.2e-07 60.8 37 73.0
HPP92_015138 Vanilla planifolia HOM05D003236 ORTHO05D003620 1.2e-07 60.8 50 58.0
AUR62009269 Chenopodium quinoa HOM05D003236 ORTHO05D003620 1.6e-07 60.5 37 67.6
AUR62042438 Chenopodium quinoa HOM05D003236 ORTHO05D003620 1.6e-07 60.5 37 67.6
Duzib114G0214 Durio zibethinus HOM05D003236 ORTHO05D003620 1.6e-07 60.5 37 67.6
Duzib199G0002 Durio zibethinus HOM05D003236 ORTHO05D003620 1.6e-07 60.5 37 67.6
CSS0018012 Camellia sinensis var. sinensis HOM05D003236 ORTHO05D003620 2.1e-07 60.1 37 67.6
Duzib147G0392 Durio zibethinus HOM05D003236 ORTHO05D003620 2.1e-07 60.1 37 67.6
ECA248G1348 Erigeron canadensis HOM05D000874 ORTHO05D001049 2.1e-07 60.1 37 67.6
Migut.G00306 Erythranthe guttata HOM05D003236 ORTHO05D003620 2.1e-07 60.1 37 64.9
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 2.1e-07 60.1 37 70.3
Rhsim04G0203500 Rhododendron simsii HOM05D003236 ORTHO05D003620 2.1e-07 60.1 37 67.6
Eucgr.B01114 Eucalyptus grandis HOM05D003236 ORTHO05D003620 2.8e-07 59.7 35 74.3
FAN04G3165 Fragaria x ananassa HOM05D003236 ORTHO05D003620 2.8e-07 59.7 37 67.6
FAN08G2949 Fragaria x ananassa HOM05D003236 ORTHO05D003620 2.8e-07 59.7 37 67.6
Gohir.A05G340100 Gossypium hirsutum HOM05D003236 ORTHO05D003620 2.8e-07 59.7 37 67.6
Gohir.D04G078600 Gossypium hirsutum HOM05D003236 ORTHO05D003620 2.8e-07 59.7 37 67.6
Gorai.012G088500 Gossypium raimondii HOM05D003236 ORTHO05D003620 2.8e-07 59.7 37 67.6
EL10Ac2g04006 Beta vulgaris HOM05D003236 ORTHO05D003620 3.6e-07 59.3 37 67.6
Cpa.g.sc125.28 Carica papaya HOM05D003236 ORTHO05D003620 3.6e-07 59.3 37 67.6
ECA248G2845 Erigeron canadensis HOM05D003236 ORTHO05D003620 3.6e-07 59.3 37 67.6
Eucgr.B01115 Eucalyptus grandis HOM05D003236 ORTHO05D003620 3.6e-07 59.3 35 74.3
FvH4_4g14820 Fragaria vesca HOM05D003236 ORTHO05D003620 3.6e-07 59.3 37 67.6
FAN12G2674 Fragaria x ananassa HOM05D003236 ORTHO05D003620 3.6e-07 59.3 37 67.6
Glyma.15G105400 Glycine max HOM05D003236 ORTHO05D003620 3.6e-07 59.3 37 67.6
HanXRQChr10g0286501 Helianthus annuus HOM05D003236 ORTHO05D003620 3.6e-07 59.3 37 67.6
Oeu030324.1 Olea europaea HOM05D003236 ORTHO05D003620 3.6e-07 59.3 37 64.9
Os02g0701900 Oryza sativa ssp. japonica HOM05D003236 ORTHO05D003620 3.6e-07 59.3 37 67.6
Hund19505 Selenicereus undatus HOM05D003236 ORTHO05D003620 3.6e-07 59.3 37 67.6
Hund19506 Selenicereus undatus HOM05D003236 ORTHO05D003620 3.6e-07 59.3 37 67.6
SGA_v2.0_scaffold166G38366 Striga asiatica HOM05D003236 ORTHO05D003620 3.6e-07 59.3 37 70.3
Zm00001eb188220 Zea mays HOM05D003236 ORTHO05D003620 3.6e-07 59.3 37 67.6
Cc03_g03280 Coffea canephora HOM05D003236 ORTHO05D003620 4.7e-07 58.9 37 64.9
Glyma.13G207200 Glycine max HOM05D003236 ORTHO05D003620 4.7e-07 58.9 37 67.6
Manes.08G075500 Manihot esculenta HOM05D003236 ORTHO05D003620 4.7e-07 58.9 37 64.9
PSO017G3704 Papaver somniferum HOM05D003236 ORTHO05D003620 4.7e-07 58.9 37 64.9
PSO478G0559 Papaver somniferum HOM05D003236 ORTHO05D003620 4.7e-07 58.9 37 64.9
Phvul.006G152000 Phaseolus vulgaris HOM05D003236 ORTHO05D003620 4.7e-07 58.9 37 64.9
Rhsim02G0180400 Rhododendron simsii HOM05D003236 ORTHO05D003620 4.7e-07 58.9 37 64.9
Actinidia23501 Actinidia chinensis HOM05D003236 ORTHO05D003620 6.2e-07 58.5 85 40.0
Eucgr.B01113 Eucalyptus grandis HOM05D003236 ORTHO05D003620 6.2e-07 58.5 37 67.6
MD13G1185700 Malus domestica HOM05D003236 ORTHO05D003620 6.2e-07 58.5 35 74.3
Sed0017985 Sechium edule HOM05D003236 ORTHO05D003620 6.2e-07 58.5 37 70.3
Duzib187G1207 Durio zibethinus HOM05D003236 ORTHO05D003620 8.1e-07 58.2 37 62.2
Lalb_Chr18g0056161 Lupinus albus HOM05D003236 ORTHO05D003620 8.1e-07 58.2 37 67.6
Nn4g26225 Nelumbo nucifera HOM05D003236 ORTHO05D003620 8.1e-07 58.2 35 71.4
VMungo0540G1138 Vigna mungo HOM05D003236 ORTHO05D003620 8.1e-07 58.2 37 64.9
MSTRG.10005 Avicennia marina HOM05D003236 ORTHO05D003620 1.1e-06 57.8 37 62.2
Ca_00632_v3 Cicer arietinum L. HOM05D003236 ORTHO05D003620 1.1e-06 57.8 37 64.9
Prupe.6G197600 Prunus persica HOM05D003236 ORTHO05D003620 1.1e-06 57.8 37 64.9
SGA_v2.0_scaffold39G15309 Striga asiatica HOM05D003236 ORTHO05D003620 1.1e-06 57.8 37 64.9
Lsat_1_v5_gn_1_50180 Lactuca sativa HOM05D003236 ORTHO05D003620 1.4e-06 57.4 37 64.9
MBI19_g44204_MAGBIO Magnolia biondii HOM05D003236 ORTHO05D003620 1.4e-06 57.4 37 64.9
Medtr2g022600 Medicago truncatula HOM05D003236 ORTHO05D003620 1.4e-06 57.4 37 64.9
Medtr3g098750 Medicago truncatula HOM05D003236 ORTHO05D003620 1.4e-06 57.4 37 64.9
Nitab4.5_0000321g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 1.4e-06 57.4 37 64.9
Nitab4.5_0006333g0030 Nicotiana tabacum HOM05D003236 ORTHO05D003620 1.4e-06 57.4 37 64.9
Nitab4.5_0006639g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 1.4e-06 57.4 37 64.9
Prupe.6G171900 Prunus persica HOM05D003236 ORTHO05D003620 1.4e-06 57.4 37 64.9
SalBow2G2662 Salvia bowleyana HOM05D003236 ORTHO05D003620 1.4e-06 57.4 37 64.9
TPR.G7640 Trifolium pratense HOM05D003236 ORTHO05D003620 1.4e-06 57.4 37 64.9
Zm00001eb251870 Zea mays HOM05D003236 ORTHO05D003620 1.4e-06 57.4 37 62.2
CAN.G851.10 Capsicum annuum HOM05D003236 ORTHO05D003620 1.8e-06 57.0 37 62.2
Migut.N00158 Erythranthe guttata HOM05D003236 ORTHO05D003620 1.8e-06 57.0 37 62.2
Nitab4.5_0008223g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 1.8e-06 57.0 37 64.9
Peaxi162Scf00069g01432 Petunia axillaris HOM05D003236 ORTHO05D003620 1.8e-06 57.0 37 62.2
TAR362G0648 Trochodendron aralioides HOM05D003236 ORTHO05D003620 1.8e-06 57.0 37 64.9
CDE05G0037 Ceratophyllum demersum HOM05D003266 ORTHO05D003718 2.4e-06 56.6 37 67.6
Solyc06g054330.3 Solanum lycopersicum HOM05D003236 ORTHO05D003620 2.4e-06 56.6 37 62.2
Sopen06g019440 Solanum pennellii HOM05D003236 ORTHO05D003620 2.4e-06 56.6 37 62.2
CANSAT56G0357 Cannabis sativa HOM05D003236 ORTHO05D003620 4.0e-06 55.8 37 62.2
HanXRQChr11g0351171 Helianthus annuus HOM05D003236 ORTHO05D003620 4.0e-06 55.8 35 68.6
SEGI_23586 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 4.0e-06 55.8 37 64.9
Potri.010G191800 Populus trichocarpa HOM05D003236 ORTHO05D003620 5.2e-06 55.5 37 62.2
RcHm_v2.0_Chr6g0272861 Rosa chinensis HOM05D003236 ORTHO05D003620 5.2e-06 55.5 37 62.2
GSVIVG01017907001 Vitis vinifera HOM05D003236 ORTHO05D003620 5.2e-06 55.5 37 64.9
COL.COLO4_20855 Corchorus olitorius HOM05D003236 ORTHO05D003620 6.8e-06 55.1 37 56.8
COL.COLO4_26632 Corchorus olitorius HOM05D003236 ORTHO05D003620 6.8e-06 55.1 37 62.2
PSO210G7458 Papaver somniferum HOM05D003236 ORTHO05D003620 6.8e-06 55.1 38 60.5
PSO832G4100 Papaver somniferum HOM05D003236 ORTHO05D003620 6.8e-06 55.1 38 60.5
RcHm_v2.0_Chr6g0272881 Rosa chinensis HOM05D003236 ORTHO05D003620 6.8e-06 55.1 37 62.2
Sabra10G0147500 Salix brachista HOM05D003236 ORTHO05D003620 6.8e-06 55.1 37 62.2
COL.COLO4_20849 Corchorus olitorius HOM05D003236 ORTHO05D003620 8.9e-06 54.7 37 59.5
TWI53G0183 Tripterygium wilfordii HOM05D003236 ORTHO05D003620 8.9e-06 54.7 35 62.9


User provided reference genes

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