Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p35530 Brassica napus HOM05D001502 ORTHO05D002950 2.0e-83 312.4 161 100.0
BcaC01g04626 Brassica carinata HOM05D001502 ORTHO05D002950 1.0e-82 310.1 161 99.4
A03p29400 Brassica napus HOM05D001502 ORTHO05D002950 1.9e-81 305.8 161 98.1
BolC3t15864H Brassica oleracea HOM05D001502 ORTHO05D002950 1.4e-79 299.7 161 96.9
BcaB01g02692 Brassica carinata HOM05D001502 ORTHO05D002950 1.1e-73 280.0 159 91.2
Sp6g05920 Schrenkiella parvula HOM05D001502 ORTHO05D002950 1.3e-69 266.5 161 86.3
BraA02t07622Z Brassica rapa HOM05D001502 ORTHO05D002950 4.9e-69 264.6 162 85.2
Thhalv10028529m.g Eutrema salsugineum HOM05D001502 ORTHO05D002950 8.4e-69 263.8 162 85.2
BcaB05g23821 Brassica carinata HOM05D001502 ORTHO05D002950 1.9e-68 262.7 162 84.6
BcaC03g14142 Brassica carinata HOM05D001502 ORTHO05D002950 9.6e-65 250.4 161 79.5
BolC2t07531H Brassica oleracea HOM05D001502 ORTHO05D002950 3.1e-63 245.4 161 78.3
BcaB01g01656 Brassica carinata HOM05D001502 ORTHO05D002950 6.4e-61 237.7 161 76.4
BcaB01g01539 Brassica carinata HOM05D001502 ORTHO05D002950 1.1e-60 236.9 157 77.1
AT4G11560 Arabidopsis thaliana HOM05D001502 ORTHO05D002950 1.4e-60 236.5 161 77.6
AL6G46080 Arabidopsis lyrata HOM05D001502 ORTHO05D002950 5.4e-60 234.6 161 77.0
BraA09t38407Z Brassica rapa HOM05D001502 ORTHO05D002950 1.0e-58 230.3 156 76.9
BraA09t38408Z Brassica rapa HOM05D001502 ORTHO05D002950 1.0e-58 230.3 156 76.9
Carub.0006s3060 Capsella rubella HOM05D001502 ORTHO05D002950 1.3e-56 223.4 161 74.5
Aa31LG9G10750 Aethionema arabicum HOM05D001502 ORTHO05D002950 6.2e-56 221.1 186 65.1
CARHR254850 Cardamine hirsuta HOM05D001502 ORTHO05D002950 3.4e-54 215.3 165 73.3
Ciclev10019291m.g Citrus clementina HOM05D001502 ORTHO05D002950 3.3e-49 198.7 147 71.4
Atru.chr9.2191 Acer truncatum HOM05D001502 ORTHO05D002950 7.4e-49 197.6 150 72.0
CiPaw.11G135500 Carya illinoinensis HOM05D001502 ORTHO05D002950 9.6e-49 197.2 175 60.0
QL12p033043 Quercus lobata HOM05D001502 ORTHO05D002950 9.6e-49 197.2 175 60.6
THA.LOC104814493 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 9.6e-49 197.2 171 64.3
Phvul.002G289400 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 6.2e-48 194.5 142 71.1
BcaB01g01516 Brassica carinata HOM05D001502 ORTHO05D002950 8.1e-48 194.1 159 66.0
Sabra01G0078700 Salix brachista HOM05D001502 ORTHO05D002950 8.1e-48 194.1 144 70.8
Duzib068G0032 Durio zibethinus HOM05D001502 ORTHO05D002950 1.4e-47 193.4 141 70.9
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 1.8e-47 193.0 135 73.3
VMungo0251G3461 Vigna mungo HOM05D001502 ORTHO05D002950 1.8e-47 193.0 180 61.7
BcaC03g16347 Brassica carinata HOM05D001502 ORTHO05D002950 4.0e-47 191.8 162 69.1
MELO3C005675.2 Cucumis melo HOM05D001502 ORTHO05D002950 4.0e-47 191.8 147 70.1
TWI60G1236 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 4.0e-47 191.8 146 70.5
CsaV3_5G002820 Cucumis sativus L. HOM05D001502 ORTHO05D002950 6.9e-47 191.0 147 70.1
CSS0008990 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 9.0e-47 190.7 172 61.6
CSS0043015 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 9.0e-47 190.7 172 61.6
Thecc.03G278600 Theobroma cacao HOM05D001502 ORTHO05D002950 9.0e-47 190.7 139 70.5
ClCG01G002730 Citrullus lanatus HOM05D001502 ORTHO05D002950 1.5e-46 189.9 148 68.9
THA.LOC104813019 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 2.0e-46 189.5 131 74.0
CiPaw.12G093300 Carya illinoinensis HOM05D001502 ORTHO05D002950 2.6e-46 189.1 146 68.5
Dinv38944 Davidia involucrata HOM05D001502 ORTHO05D002950 4.5e-46 188.3 168 62.5
Duzib205G1526 Durio zibethinus HOM05D001502 ORTHO05D002950 4.5e-46 188.3 151 66.9
Sed0021720 Sechium edule HOM05D001502 ORTHO05D002950 4.5e-46 188.3 148 68.2
Gohir.D11G022000 Gossypium hirsutum HOM05D001502 ORTHO05D002950 9.9e-46 187.2 148 67.6
LjContig00312_ERROPOS870357g0010973 Lotus japonicus HOM05D001502 ORTHO05D002950 9.9e-46 187.2 167 61.7
arahy.Tifrunner.gnm1.ann1.T4KI49 Arachis hypogaea HOM05D001502 ORTHO05D002950 1.3e-45 186.8 183 58.5
TAR629G2340 Trochodendron aralioides HOM05D001502 ORTHO05D002950 1.3e-45 186.8 164 65.9
Gohir.A11G022300 Gossypium hirsutum HOM05D001502 ORTHO05D002950 1.7e-45 186.4 148 66.9
Gorai.004G212000 Gossypium raimondii HOM05D001502 ORTHO05D002950 1.7e-45 186.4 113 80.5
Gorai.007G023400 Gossypium raimondii HOM05D001502 ORTHO05D002950 1.7e-45 186.4 148 66.9
arahy.Tifrunner.gnm1.ann1.RBC6WC Arachis hypogaea HOM05D001502 ORTHO05D002950 2.2e-45 186.0 183 58.5
Ca_24551_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 2.2e-45 186.0 150 65.3
Eucgr.E00595 Eucalyptus grandis HOM05D001502 ORTHO05D002950 2.9e-45 185.7 143 69.9
Glyma.08G014500 Glycine max HOM05D001502 ORTHO05D002950 2.9e-45 185.7 142 68.3
Psat2g182400 Pisum sativum HOM05D001502 ORTHO05D002950 3.8e-45 185.3 150 66.7
Potri.003G127400 Populus trichocarpa HOM05D001502 ORTHO05D002950 3.8e-45 185.3 146 68.5
Gohir.A08G182600 Gossypium hirsutum HOM05D001502 ORTHO05D002950 4.9e-45 184.9 113 79.6
Lalb_Chr16g0389971 Lupinus albus HOM05D001502 ORTHO05D002950 6.4e-45 184.5 147 66.7
Manes.02G022300 Manihot esculenta HOM05D001502 ORTHO05D002950 1.4e-44 183.3 174 58.0
TPR.G6654 Trifolium pratense HOM05D001502 ORTHO05D002950 2.4e-44 182.6 150 64.0
TPR.G16303 Trifolium pratense HOM05D001502 ORTHO05D002950 3.2e-44 182.2 150 64.0
BcaC04g21078 Brassica carinata HOM05D001502 ORTHO05D002950 4.2e-44 181.8 160 65.6
TWI81G0062 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 4.2e-44 181.8 146 66.4
Prupe.5G100000 Prunus persica HOM05D001502 ORTHO05D002950 7.1e-44 181.0 150 64.0
PGR042G2965 Punica granatum HOM05D001502 ORTHO05D002950 9.3e-44 180.6 152 64.5
GSVIVG01019755001 Vitis vinifera HOM05D001502 ORTHO05D002950 9.3e-44 180.6 172 59.3
Hund11470 Selenicereus undatus HOM05D001502 ORTHO05D002950 1.2e-43 180.3 143 67.1
Glyma.05G207800 Glycine max HOM05D001502 ORTHO05D002950 2.7e-43 179.1 111 78.4
Cfa012182 Carpinus fangiana HOM05D001502 ORTHO05D002950 4.6e-43 178.3 146 67.1
RcHm_v2.0_Chr7g0197721 Rosa chinensis HOM05D001502 ORTHO05D002950 6.0e-43 177.9 150 62.7
Medtr5g010190 Medicago truncatula HOM05D001502 ORTHO05D002950 7.9e-43 177.6 148 63.5
MD06G1082900 Malus domestica HOM05D001502 ORTHO05D002950 1.3e-42 176.8 150 64.7
Nn6g33451 Nelumbo nucifera HOM05D001502 ORTHO05D002950 1.3e-42 176.8 147 66.0
Sopen08g029370 Solanum pennellii HOM05D001502 ORTHO05D002950 1.3e-42 176.8 146 63.7
vmacro11332 Vaccinium macrocarpon HOM05D001502 ORTHO05D002950 1.3e-42 176.8 169 56.2
BcaC04g21150 Brassica carinata HOM05D001502 ORTHO05D002950 2.3e-42 176.0 103 83.5
BolC9t56342H Brassica oleracea HOM05D001502 ORTHO05D002950 2.3e-42 176.0 103 83.5
CAN.G774.38 Capsicum annuum HOM05D001502 ORTHO05D002950 3.0e-42 175.6 145 63.4
Manes.01G061900 Manihot esculenta HOM05D001502 ORTHO05D002950 3.0e-42 175.6 142 65.5
PGSC0003DMG400012341 Solanum tuberosum HOM05D001502 ORTHO05D002950 3.0e-42 175.6 146 63.7
MD14G1104300 Malus domestica HOM05D001502 ORTHO05D002950 5.1e-42 174.9 182 56.0
arahy.Tifrunner.gnm1.ann1.W3TBCC Arachis hypogaea HOM05D001502 ORTHO05D002950 6.7e-42 174.5 147 61.2
FAN13G3007 Fragaria x ananassa HOM05D001502 ORTHO05D002950 6.7e-42 174.5 150 61.3
FAN18G4468 Fragaria x ananassa HOM05D001502 ORTHO05D002950 6.7e-42 174.5 150 61.3
Hma1.2p1_2966F.1_g330990 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 6.7e-42 174.5 149 61.1
Lj2A192G36 Lonicera japonica HOM05D001502 ORTHO05D002950 6.7e-42 174.5 144 68.1
BcaC04g21076 Brassica carinata HOM05D001502 ORTHO05D002950 8.7e-42 174.1 157 63.7
FAN08G1592 Fragaria x ananassa HOM05D001502 ORTHO05D002950 1.1e-41 173.7 150 61.3
BraA09t38328Z Brassica rapa HOM05D001502 ORTHO05D002950 1.5e-41 173.3 103 82.5
Actinidia27382 Actinidia chinensis HOM05D001502 ORTHO05D002950 1.9e-41 172.9 166 59.6
arahy.Tifrunner.gnm1.ann1.HI8SJE Arachis hypogaea HOM05D001502 ORTHO05D002950 1.9e-41 172.9 147 60.5
Lalb_Chr09g0320971 Lupinus albus HOM05D001502 ORTHO05D002950 3.3e-41 172.2 147 63.3
CAN.G1842.1 Capsicum annuum HOM05D001502 ORTHO05D002950 9.6e-41 170.6 142 62.7
Medtr8g098290 Medicago truncatula HOM05D001502 ORTHO05D002950 1.6e-40 169.9 143 65.7
Sed0014228 Sechium edule HOM05D001502 ORTHO05D002950 1.6e-40 169.9 168 57.7
Nitab4.5_0001315g0080 Nicotiana tabacum HOM05D001502 ORTHO05D002950 2.1e-40 169.5 156 59.0
Rhsim02G0231100 Rhododendron simsii HOM05D001502 ORTHO05D002950 2.1e-40 169.5 170 55.3
Nitab4.5_0010968g0020 Nicotiana tabacum HOM05D001502 ORTHO05D002950 2.8e-40 169.1 156 59.0
Ca_17534_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 3.7e-40 168.7 146 61.6
Oeu019190.1 Olea europaea HOM05D001502 ORTHO05D002950 3.7e-40 168.7 175 55.4
Migut.E01091 Erythranthe guttata HOM05D001502 ORTHO05D002950 6.2e-40 167.9 167 55.1
Aqoxy3G00056 Aquilegia oxysepala HOM05D001502 ORTHO05D002950 1.1e-39 167.2 169 57.4
CANSAT21G0813 Cannabis sativa HOM05D001502 ORTHO05D002950 1.1e-39 167.2 142 60.6
Lj4g0001385 Lotus japonicus HOM05D001502 ORTHO05D002950 1.1e-39 167.2 109 75.2
Actinidia02007 Actinidia chinensis HOM05D001502 ORTHO05D002950 1.4e-39 166.8 168 54.8
Hma1.2p1_0896F.1_g234010 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 1.8e-39 166.4 180 54.4
SalBow1G7558 Salvia bowleyana HOM05D001502 ORTHO05D002950 1.8e-39 166.4 177 54.2
FAN04G2422 Fragaria x ananassa HOM05D001502 ORTHO05D002950 2.4e-39 166.0 135 63.7
Nitab4.5_0001615g0190 Nicotiana tabacum HOM05D001502 ORTHO05D002950 2.4e-39 166.0 156 58.3
Ah.12g056920 Amaranthus hybridus HOM05D001502 ORTHO05D002950 1.5e-38 163.3 143 62.9
MSTRG.25606 Avicennia marina HOM05D001502 ORTHO05D002950 4.5e-38 161.8 167 53.9
Migut.A00766 Erythranthe guttata HOM05D001502 ORTHO05D002950 1.0e-37 160.6 140 61.4
SGA_v2.0_scaffold479G52245 Striga asiatica HOM05D001502 ORTHO05D002950 1.7e-37 159.8 149 57.0
TPR.G12968 Trifolium pratense HOM05D001502 ORTHO05D002950 1.7e-37 159.8 176 51.7
EL10Ac5g13060 Beta vulgaris HOM05D001502 ORTHO05D002950 2.2e-37 159.5 143 60.8
CAN.G774.33 Capsicum annuum HOM05D001502 ORTHO05D002950 2.2e-37 159.5 110 70.0
DCAR_000610 Daucus carota HOM05D001502 ORTHO05D002950 2.2e-37 159.5 146 61.6
Glyma.01G220200 Glycine max HOM05D001502 ORTHO05D002950 2.9e-37 159.1 116 66.4
HanXRQChr07g0189841 Helianthus annuus HOM05D001502 ORTHO05D002950 2.9e-37 159.1 142 62.0
PSO170G6703 Papaver somniferum HOM05D001502 ORTHO05D002950 3.8e-37 158.7 139 61.2
MSTRG.13843 Avicennia marina HOM05D001502 ORTHO05D002950 4.9e-37 158.3 174 51.1
Peaxi162Scf00119g00829 Petunia axillaris HOM05D001502 ORTHO05D002950 6.5e-37 157.9 144 59.7
Cpa.g.sc74.49 Carica papaya HOM05D001502 ORTHO05D002950 8.4e-37 157.5 110 74.5
Lsat_1_v5_gn_6_6481 Lactuca sativa HOM05D001502 ORTHO05D002950 1.1e-36 157.1 139 62.6
Lalb_Chr09g0320961 Lupinus albus HOM05D001502 ORTHO05D002950 1.1e-36 157.1 108 70.4
AUR62010679 Chenopodium quinoa HOM05D001502 ORTHO05D002950 1.4e-36 156.8 165 55.2
CDE08G1696 Ceratophyllum demersum HOM05D001502 ORTHO05D002950 1.9e-36 156.4 147 58.5
AUR62017203 Chenopodium quinoa HOM05D001502 ORTHO05D002950 2.5e-36 156.0 146 59.6
unitig_88.g27614 Utricularia gibba HOM05D001502 ORTHO05D002950 2.5e-36 156.0 121 61.2
ECA233G0801 Erigeron canadensis HOM05D001502 ORTHO05D002950 7.1e-36 154.5 157 56.7
Medtr8g098260 Medicago truncatula HOM05D001502 ORTHO05D002950 7.1e-36 154.5 142 60.6
Hma1.2p1_0792F.1_g218570 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 1.2e-35 153.7 174 50.6
HPP92_025727 Vanilla planifolia HOM05D001502 ORTHO05D002950 1.2e-35 153.7 146 56.2
Sabra03G0090400 Salix brachista HOM05D001502 ORTHO05D002950 2.7e-35 152.5 194 49.5
Cc10_g03930 Coffea canephora HOM05D001502 ORTHO05D002950 4.6e-35 151.8 144 56.2
SGA_v2.0_scaffold96G28937 Striga asiatica HOM05D001502 ORTHO05D002950 1.0e-34 150.6 140 55.7
ATR0680G298 Amborella trichopoda HOM05D001502 ORTHO05D002950 1.3e-34 150.2 143 54.5
Psat7g033280 Pisum sativum HOM05D001502 ORTHO05D002950 1.3e-34 150.2 182 50.5
HanXRQChr07g0187221 Helianthus annuus HOM05D001502 ORTHO05D002950 1.8e-34 149.8 139 59.7
VMungo1215G2558 Vigna mungo HOM05D001502 ORTHO05D002950 3.0e-34 149.1 111 62.2
Os01g0527400 Oryza sativa ssp. japonica HOM05D001502 ORTHO05D002950 5.1e-34 148.3 140 53.6
Ciclev10003744m.g Citrus clementina HOM05D001502 ORTHO05D002950 1.1e-33 147.1 156 56.4
Phvul.002G157900 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 1.3e-32 143.7 111 61.3
Mapoly0111s0032 Marchantia polymorpha HOM05D001502 ORTHO05D002950 2.4e-31 139.4 158 50.6
Actinidia33752 Actinidia chinensis HOM05D001502 ORTHO05D002950 6.9e-31 137.9 173 52.0
Haze_08835 Corylus avellana HOM05D001502 ORTHO05D002950 6.9e-31 137.9 120 62.5
TAR375G0676 Trochodendron aralioides HOM05D001502 ORTHO05D002950 2.0e-30 136.3 159 53.5
SMO364G0341 Selaginella moellendorffii HOM05D001502 ORTHO05D002950 4.5e-30 135.2 114 53.5
SEGI_08344 Sequoiadendron giganteum HOM05D001502 ORTHO05D002950 3.2e-28 129.0 140 48.6
FvH4_5g02390 Fragaria vesca HOM05D001502 ORTHO05D002950 1.2e-27 127.1 90 68.9
Pp3c1_20810 Physcomitrium patens HOM05D001502 ORTHO05D002950 7.9e-27 124.4 130 51.5
Pp3c14_3750 Physcomitrium patens HOM05D001502 ORTHO05D002950 3.0e-26 122.5 110 52.7
AagrBONN_evm.TU.Sc2ySwM_344.901 Anthoceros agrestis HOM05D001502 ORTHO05D002950 6.7e-26 121.3 138 49.3
CBR_g52340 Chara braunii HOM05D001502 ORTHO05D002950 8.8e-26 120.9 112 50.9
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 1.1e-25 120.6 178 44.4
CAN.G774.34 Capsicum annuum HOM05D001502 ORTHO05D002950 2.2e-24 116.3 156 47.4
CAN.G774.29 Capsicum annuum HOM05D001502 ORTHO05D002950 5.9e-22 108.2 170 43.5
SEGI_18030 Sequoiadendron giganteum HOM05D001502 ORTHO05D002950 2.2e-21 106.3 111 49.5
CARHR101270 Cardamine hirsuta HOM05D001502 ORTHO05D002950 2.5e-20 102.8 83 67.5
CAN.G774.45 Capsicum annuum HOM05D001502 ORTHO05D002950 7.2e-20 101.3 123 48.0
MD07G1059700 Malus domestica HOM05D001502 ORTHO05D002950 4.7e-19 98.6 125 47.2
PSO675G1241 Papaver somniferum HOM05D001502 ORTHO05D002950 1.5e-17 93.6 102 48.0
PSO675G2714 Papaver somniferum HOM05D001502 ORTHO05D002950 2.0e-17 93.2 102 48.0
PSO732G0359 Papaver somniferum HOM05D001502 ORTHO05D002950 3.3e-17 92.4 102 47.1
Gohir.D08G201100 Gossypium hirsutum HOM05D001502 ORTHO05D002950 7.4e-17 91.3 58 81.0
PSO724G0222 Papaver somniferum HOM05D001502 ORTHO05D002950 2.4e-15 86.3 100 44.0
PSO729G0025 Papaver somniferum HOM05D001502 ORTHO05D002950 2.4e-15 86.3 100 44.0
SGA_v2.0_scaffold173G39192 Striga asiatica HOM05D001502 ORTHO05D002950 2.0e-14 83.2 87 52.9
Sc22g0005600 Simmondsia chinensis HOM05D001502 ORTHO05D002950 1.0e-13 80.9 58 70.7
SMO353G0270 Selaginella moellendorffii HOM05D001502 ORTHO05D002950 1.3e-13 80.5 79 49.4
Nitab4.5_0023620g0010 Nicotiana tabacum HOM05D001502 ORTHO05D002950 2.9e-13 79.3 146 37.0
SEGI_02304 Sequoiadendron giganteum HOM05D001502 ORTHO05D002950 7.2e-12 74.7 60 58.3
CAN.G774.28 Capsicum annuum HOM05D001502 ORTHO05D002950 3.6e-11 72.4 57 66.7
CAN.G4310.1 Capsicum annuum HOM05D001502 ORTHO05D002950 8.0e-11 71.2 52 65.4
unitig_0.g2859 Utricularia gibba HOM05D001502 ORTHO05D002950 1.1e-09 67.4 83 48.2
PSO210G1085 Papaver somniferum HOM05D001502 ORTHO05D304376 4.1e-07 58.9 103 36.9


User provided reference genes

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