Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 1.7e-304 1048.5 514 100.0
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 4.9e-304 1047.0 514 99.8
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 5.6e-300 1033.5 514 98.6
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 1.4e-287 992.3 519 95.6
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 1.4e-287 992.3 518 95.6
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 2.5e-268 928.3 520 90.0
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 1.8e-266 922.2 524 88.2
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 1.9e-263 912.1 535 86.2
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 4.0e-258 894.4 532 85.5
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 1.9e-255 885.6 539 83.7
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 2.1e-254 882.1 537 84.0
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 4.8e-251 870.9 524 83.6
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 2.5e-239 832.0 525 78.9
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 1.0e-237 826.6 536 77.8
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 9.1e-218 760.4 484 74.6
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 2.0e-217 759.2 469 77.2
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 2.6e-217 758.8 464 78.2
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 3.5e-217 758.4 516 71.3
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 3.5e-217 758.4 469 77.2
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 2.9e-216 755.4 469 77.4
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 5.0e-216 754.6 491 73.7
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 8.5e-216 753.8 475 74.5
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 1.1e-215 753.4 466 76.2
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 1.1e-215 753.4 471 76.9
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.9e-215 752.7 516 71.1
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 5.5e-215 751.1 475 74.9
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 1.6e-214 749.6 460 77.8
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 1.6e-214 749.6 477 75.1
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 3.6e-214 748.4 466 75.8
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 6.1e-214 747.7 503 73.0
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 1.4e-213 746.5 466 75.5
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 1.8e-213 746.1 475 75.2
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 1.8e-213 746.1 503 71.4
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 2.3e-213 745.7 540 68.5
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 3.0e-213 745.3 479 74.1
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 6.7e-213 744.2 477 74.2
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 8.8e-213 743.8 492 73.6
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 8.8e-213 743.8 464 76.7
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 1.5e-212 743.0 452 78.5
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.5e-212 743.0 533 69.6
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 1.5e-212 743.0 533 69.0
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 2.0e-212 742.7 465 75.3
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 2.6e-212 742.3 460 76.1
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 4.4e-212 741.5 475 74.3
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 5.7e-212 741.1 474 74.9
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 9.7e-212 740.3 514 71.6
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 1.3e-211 740.0 475 74.1
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 1.7e-211 739.6 475 73.1
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 2.8e-211 738.8 469 74.6
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 4.8e-211 738.0 473 74.0
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 4.8e-211 738.0 466 75.1
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 1.1e-210 736.9 479 73.9
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 1.8e-210 736.1 465 75.1
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.1e-210 735.3 534 68.2
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 1.2e-209 733.4 481 73.2
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 1.2e-209 733.4 475 72.0
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 1.6e-209 733.0 528 68.9
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 2.6e-209 732.3 533 68.9
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 2.6e-209 732.3 460 74.8
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 5.9e-209 731.1 472 73.5
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 7.7e-209 730.7 477 73.2
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 7.7e-209 730.7 475 71.8
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 1.0e-208 730.3 486 71.6
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 1.0e-208 730.3 465 74.2
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 2.2e-208 729.2 463 75.6
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 2.9e-208 728.8 477 73.8
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 3.8e-208 728.4 463 74.7
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 5.0e-208 728.0 460 74.1
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 8.5e-208 727.2 515 68.5
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 1.1e-207 726.9 465 74.0
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 1.5e-207 726.5 463 73.9
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 1.5e-207 726.5 553 67.1
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 4.2e-207 724.9 534 68.7
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 2.1e-206 722.6 469 73.3
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 3.6e-206 721.8 460 73.0
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 8.0e-206 720.7 538 67.3
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 8.8e-205 717.2 467 72.8
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 5.7e-204 714.5 616 61.2
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 5.7e-204 714.5 466 73.8
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 1.7e-203 713.0 458 74.5
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 2.2e-203 712.6 502 69.9
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 2.2e-203 712.6 476 72.9
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 2.8e-203 712.2 475 71.4
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 4.8e-203 711.4 527 67.0
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 4.8e-203 711.4 515 68.7
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.1e-202 710.3 469 71.6
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 2.4e-202 709.1 469 72.5
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 2.0e-201 706.1 539 64.4
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 7.7e-201 704.1 459 73.0
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 8.0e-198 694.1 477 69.2
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 1.5e-196 689.9 457 70.9
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 4.4e-196 688.3 488 67.4
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 1.1e-194 683.7 468 69.4
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 1.2e-193 680.2 447 70.9
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 3.5e-193 678.7 512 64.8
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 4.2e-191 671.8 602 58.0
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 1.4e-189 666.8 410 77.1
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 2.3e-189 666.0 436 72.0
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.0e-188 662.9 513 64.1
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 9.8e-188 660.6 421 73.9
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 1.8e-186 656.4 421 73.6
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 1.2e-185 653.7 458 68.1
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 2.3e-181 639.4 472 64.6
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.9e-178 629.8 469 64.0
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 3.2e-178 629.0 410 74.1
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 7.8e-177 624.4 448 64.1
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 1.9e-175 619.8 442 66.3
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 3.1e-173 612.5 463 63.1
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 1.3e-171 607.1 421 67.9
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 1.4e-170 603.6 447 64.9
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 1.9e-170 603.2 464 61.4
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 6.8e-165 584.7 464 60.3
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 6.4e-163 578.2 464 59.9
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 9.2e-162 574.3 449 61.7
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 3.5e-161 572.4 457 59.5
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 5.6e-159 565.1 475 59.4
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 2.4e-157 559.7 468 61.8
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 8.9e-157 557.8 452 58.8
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.3e-155 553.9 356 73.3
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 1.4e-154 550.4 452 59.5
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 1.9e-151 540.0 395 65.3
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 3.9e-136 489.2 352 66.5
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 8.1e-134 481.5 379 62.8
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 2.5e-127 459.9 508 49.8
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 3.8e-115 419.5 268 74.6
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 4.8e-110 402.5 316 64.6
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 8.2e-110 401.7 255 73.3
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 1.9e-106 390.6 421 47.5
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 4.0e-96 356.3 261 65.1
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.6e-92 344.4 361 53.7
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 5.5e-90 335.9 262 58.8
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 3.7e-86 323.2 199 78.4
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.9e-82 310.8 214 64.0
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 1.2e-81 308.1 233 61.4
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 2.6e-63 247.3 202 64.4
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 8.3e-54 215.7 162 63.6
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 3.6e-49 200.3 144 66.7
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 3.4e-39 167.2 113 69.0
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 4.4e-39 166.8 100 82.0
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 9.3e-37 159.1 178 50.6
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 2.7e-36 157.5 156 55.1
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.9e-34 151.4 91 73.6
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 2.9e-30 137.5 114 58.8
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 7.9e-28 129.4 129 51.2
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 4.5e-15 87.0 57 61.4
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 1.7e-14 85.1 111 46.8
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 4.9e-14 83.6 49 83.7
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 4.9e-14 83.6 49 83.7
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 1.1e-13 82.4 57 71.9
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 3.2e-13 80.9 57 73.7
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 1.8e-08 65.1 65 56.9
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 2.2e-06 58.2 96 43.8


User provided reference genes

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