Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1618.2 813 100.0
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1464.9 902 85.4
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 0.0e+00 1240.7 959 70.8
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1224.5 938 71.2
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 0.0e+00 1223.4 960 69.8
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1221.8 942 70.7
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 0.0e+00 1220.7 956 70.5
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 0.0e+00 1211.8 961 69.4
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 0.0e+00 1211.4 959 69.9
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 0.0e+00 1209.9 953 69.8
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1198.0 950 69.3
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 0.0e+00 1196.4 957 69.4
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 0.0e+00 1190.3 955 69.3
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1179.9 913 70.3
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 1.4e-308 1062.8 950 63.3
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 4.2e-278 961.4 957 57.1
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 4.3e-270 934.9 567 85.7
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 8.7e-215 751.1 961 46.6
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 1.5e-211 740.3 916 48.1
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 6.5e-210 734.9 982 46.2
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 1.2e-208 730.7 971 45.9
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 1.3e-205 720.7 973 44.6
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 2.8e-205 719.5 730 52.7
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 3.7e-205 719.2 975 45.1
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 6.9e-204 714.9 980 44.9
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 6.9e-204 714.9 945 45.0
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 1.3e-202 710.7 727 52.7
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 1.7e-202 710.3 951 45.3
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 3.8e-202 709.1 776 49.9
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 1.9e-201 706.8 969 43.8
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 5.5e-201 705.3 767 50.5
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 3.6e-200 702.6 946 45.0
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.0e-199 701.0 982 43.9
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 2.3e-199 699.9 776 49.7
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 8.8e-199 698.0 967 44.4
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 2.0e-198 696.8 722 52.9
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 3.3e-198 696.0 757 50.1
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.7e-197 693.7 984 43.8
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 4.8e-197 692.2 946 44.6
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 1.4e-196 690.6 945 45.5
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 2.4e-196 689.9 944 43.1
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 2.4e-196 689.9 722 52.4
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 5.3e-196 688.7 930 44.4
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 5.9e-195 685.3 948 44.7
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 5.9e-195 685.3 988 43.6
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 7.7e-195 684.9 863 47.7
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.3e-194 684.1 972 42.7
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 1.3e-194 684.1 932 44.7
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 3.8e-194 682.6 715 52.2
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.5e-193 679.9 976 44.3
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 4.2e-193 679.1 851 48.1
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 2.1e-192 676.8 698 52.1
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 2.1e-192 676.8 803 48.2
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 3.6e-192 676.0 969 42.4
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 4.7e-192 675.6 929 44.6
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 6.1e-192 675.2 964 42.1
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 7.9e-192 674.9 949 42.8
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.4e-191 674.1 976 44.1
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 1.8e-191 673.7 945 44.7
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 3.0e-191 672.9 909 45.7
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.9e-191 672.5 976 44.1
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 5.1e-191 672.2 885 45.5
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 1.1e-190 671.0 962 42.5
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 2.6e-190 669.8 725 51.4
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 4.4e-190 669.1 1002 42.5
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 5.7e-190 668.7 827 46.6
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 9.7e-190 667.9 896 45.8
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 4.8e-189 665.6 940 42.6
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 1.1e-188 664.5 971 41.2
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 1.4e-188 664.1 985 43.0
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 9.1e-188 661.4 943 42.5
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 9.1e-188 661.4 811 46.9
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 2.0e-187 660.2 818 45.0
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 3.8e-186 656.0 697 50.6
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 5.0e-186 655.6 971 42.3
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.4e-185 654.1 952 43.5
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 1.4e-185 654.1 896 46.1
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 1.9e-185 653.7 849 46.2
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.5e-185 653.3 955 42.9
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 4.2e-185 652.5 689 51.8
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 4.2e-185 652.5 964 41.8
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 5.5e-185 652.1 781 47.1
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 9.4e-185 651.4 700 51.4
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 8.0e-184 648.3 733 49.1
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 5.2e-183 645.6 970 43.6
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 3.3e-182 642.9 942 43.1
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 3.3e-182 642.9 697 49.5
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 3.3e-182 642.9 697 49.5
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.3e-181 641.0 855 43.7
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 1.3e-181 641.0 680 51.9
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 2.2e-181 640.2 741 48.0
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 2.2e-181 640.2 664 52.6
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 2.2e-181 640.2 882 44.2
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 4.7e-176 622.5 811 45.1
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 2.0e-174 617.1 688 48.5
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 2.6e-174 616.7 665 51.3
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 9.7e-174 614.8 706 48.9
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 4.5e-171 605.9 725 45.5
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 5.5e-169 599.0 692 49.6
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 8.0e-168 595.1 776 45.5
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 4.4e-166 589.3 918 40.6
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 2.8e-165 586.6 795 44.5
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 3.7e-165 586.3 719 47.0
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 8.0e-160 568.5 670 47.2
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 9.5e-153 545.0 615 50.4
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 9.8e-150 535.0 673 44.6
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 1.4e-148 531.2 711 42.6
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 2.4e-148 530.4 711 43.2
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.4e-143 514.6 674 45.1
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 1.2e-134 485.0 406 64.0
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 3.4e-134 483.4 434 57.4
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.7e-133 479.9 606 46.7
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.9e-132 477.6 430 58.1
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 3.0e-130 470.3 683 40.6
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 6.2e-128 462.6 626 42.3
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 1.1e-127 461.8 695 39.9
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.2e-126 458.4 621 45.6
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 2.7e-123 447.2 597 42.5
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 5.1e-122 443.0 674 39.9
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.1e-119 435.3 653 40.4
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 4.3e-113 413.3 671 39.9
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 1.1e-111 408.7 601 40.9
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 2.5e-97 360.9 286 63.3
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 8.5e-85 319.3 675 31.7
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 1.4e-84 318.5 553 37.1
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.5e-78 298.5 702 31.8
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 1.4e-76 292.0 266 62.8
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 1.2e-75 288.9 323 56.0
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 3.6e-67 260.8 256 60.2
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 3.3e-65 254.2 243 55.6
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 3.7e-64 250.8 506 36.4
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 2.0e-62 245.0 532 35.7
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 1.8e-58 231.9 267 49.4
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 5.9e-46 190.3 193 53.9
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 1.0e-42 179.5 234 44.9
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 6.8e-42 176.8 216 47.2
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 1.4e-39 169.1 313 38.0
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 5.2e-34 150.6 175 50.3
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 4.3e-28 131.0 121 56.2
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.4e-25 120.9 96 60.4
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 1.3e-24 119.4 505 24.0
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 1.9e-23 115.5 115 49.6
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 4.1e-23 114.4 191 39.3
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 7.1e-23 113.6 169 39.1
C04p07680 Brassica napus HOM05D004501 ORTHO05D023925 3.6e-19 101.3 74 73.0
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 6.8e-18 97.1 90 48.9
BraA05t19626Z Brassica rapa HOM05D004501 ORTHO05D023925 9.6e-12 76.6 94 51.1
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 9.6e-12 76.6 45 82.2
A05p06580 Brassica napus HOM05D004501 ORTHO05D023925 1.2e-11 76.3 94 51.1
BcaB02g09086 Brassica carinata HOM05D004501 ORTHO05D023925 1.8e-10 72.4 48 70.8
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 1.7e-08 65.9 298 27.9
Zm00001eb420770 Zea mays HOM05D003450 ORTHO05D004150 1.7e-08 65.9 140 30.0
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 7.8e-06 57.0 39 61.5


User provided reference genes

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