Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-269 932.6 462 100.0
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 2.1e-258 895.2 479 94.6
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 4.6e-213 744.6 517 75.8
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 1.0e-212 743.4 520 75.6
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 1.3e-212 743.0 517 75.4
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.3e-212 743.0 517 75.8
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 5.1e-212 741.1 515 75.0
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.4e-209 733.0 518 74.9
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 4.1e-209 731.5 508 75.8
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 1.5e-208 729.6 516 74.6
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 1.0e-207 726.9 516 73.6
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 3.8e-207 724.9 515 74.0
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 2.1e-205 719.2 515 74.0
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.4e-198 696.4 535 69.9
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 4.5e-192 674.9 515 69.7
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 5.2e-188 661.4 516 68.8
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 1.7e-175 619.8 453 69.5
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 1.7e-175 619.8 454 68.7
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 7.2e-174 614.4 510 62.7
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 9.4e-174 614.0 461 67.9
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 1.2e-173 613.6 485 65.4
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 2.1e-173 612.8 453 68.4
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 2.7e-173 612.5 453 68.0
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 2.7e-173 612.5 493 64.7
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 2.7e-173 612.5 453 68.0
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 4.7e-173 611.7 454 67.8
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 8.0e-173 610.9 461 67.7
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 8.0e-173 610.9 509 62.7
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 1.0e-172 610.5 495 68.5
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.0e-172 610.5 454 67.6
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.4e-172 610.1 484 64.7
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.8e-172 609.8 453 67.3
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 3.0e-172 609.0 484 64.7
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 4.0e-172 608.6 488 63.5
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.2e-172 608.2 490 63.9
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 5.2e-172 608.2 453 68.4
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 5.2e-172 608.2 456 67.3
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 6.8e-172 607.8 472 66.3
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 6.8e-172 607.8 493 63.1
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 6.8e-172 607.8 503 63.2
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 6.8e-172 607.8 488 63.9
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 8.8e-172 607.4 453 67.8
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 8.8e-172 607.4 453 68.2
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 8.8e-172 607.4 476 66.0
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 8.8e-172 607.4 505 63.2
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 1.5e-171 606.7 450 67.3
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.5e-171 606.7 453 68.2
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 1.5e-171 606.7 525 60.8
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 2.0e-171 606.3 463 66.7
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 2.0e-171 606.3 454 66.5
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.6e-171 605.9 489 63.8
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 3.4e-171 605.5 453 67.8
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 5.7e-171 604.7 505 62.0
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 7.5e-171 604.4 500 63.0
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 7.5e-171 604.4 453 68.0
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 9.8e-171 604.0 504 61.9
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.3e-170 603.6 457 66.3
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.8e-170 602.4 453 66.7
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 2.8e-170 602.4 453 67.3
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 3.7e-170 602.1 453 66.7
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 3.7e-170 602.1 453 66.2
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 4.9e-170 601.7 465 65.4
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 8.3e-170 600.9 475 65.7
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 8.3e-170 600.9 453 68.2
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.8e-169 599.7 453 66.4
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.8e-169 599.7 503 62.6
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 2.4e-169 599.4 453 65.8
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.4e-169 599.4 507 61.5
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 3.1e-169 599.0 454 66.3
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 4.1e-169 598.6 506 62.1
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.4e-169 598.2 511 61.6
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 5.4e-169 598.2 453 66.4
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 1.6e-168 596.7 453 66.0
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 2.0e-168 596.3 512 60.4
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 2.0e-168 596.3 453 65.3
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 2.7e-168 595.9 453 66.4
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 4.5e-168 595.1 451 67.6
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 7.7e-168 594.3 468 63.9
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.7e-167 593.2 509 60.9
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 5.0e-167 591.7 513 60.6
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.0e-167 591.7 528 58.9
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 6.6e-167 591.3 453 66.7
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 8.6e-167 590.9 453 65.8
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 8.6e-167 590.9 472 64.8
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 8.6e-167 590.9 489 62.0
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.5e-166 590.1 454 64.8
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.3e-166 589.0 453 66.2
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 7.3e-166 587.8 493 61.7
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 1.2e-165 587.0 453 64.9
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 1.2e-165 587.0 453 64.5
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 1.6e-165 586.6 448 65.6
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 8.0e-165 584.3 532 57.5
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 1.0e-164 583.9 453 65.1
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 2.3e-164 582.8 491 60.5
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 4.0e-164 582.0 465 63.2
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 1.3e-162 577.0 503 60.8
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 4.9e-162 575.1 461 64.2
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 8.3e-162 574.3 504 59.5
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 2.7e-160 569.3 519 58.2
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.0e-159 567.4 453 62.9
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.3e-159 566.2 488 61.7
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 6.6e-159 564.7 498 59.0
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 3.3e-158 562.4 445 69.2
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 5.6e-158 561.6 482 64.9
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 7.3e-158 561.2 476 60.7
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.2e-157 560.5 469 61.0
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 8.9e-156 554.3 453 61.4
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.9e-153 546.6 450 63.3
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 9.2e-153 544.3 460 60.2
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 2.7e-152 542.7 451 60.5
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 7.8e-152 541.2 371 70.9
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 3.0e-151 539.3 478 56.9
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 8.6e-151 537.7 372 70.2
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 4.3e-150 535.4 407 65.4
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 7.3e-150 534.6 371 69.8
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 3.6e-149 532.3 453 60.9
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.2e-147 527.3 458 59.6
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 9.8e-147 524.2 430 62.3
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 4.9e-146 521.9 482 57.3
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 4.1e-145 518.8 471 56.7
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.3e-143 513.8 343 75.2
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 3.0e-143 512.7 343 75.2
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 1.9e-142 510.0 353 73.9
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 4.1e-137 492.3 451 55.4
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 3.9e-135 485.7 455 58.2
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.3e-130 470.7 347 71.5
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 8.4e-130 468.0 343 70.3
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 3.0e-119 433.0 705 38.9
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 5.3e-108 395.6 385 60.3
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.5e-102 377.5 398 54.0
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 3.0e-87 326.6 237 67.9
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 2.6e-83 313.5 246 66.7
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 5.9e-83 312.4 240 70.0
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.3e-77 294.7 292 53.1
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 3.6e-72 276.6 442 36.7
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 1.6e-67 261.2 503 33.8
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.7e-66 257.7 167 74.3
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 6.5e-66 255.8 220 65.0
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 3.7e-61 240.0 165 75.8
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 6.3e-61 239.2 358 38.0
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 1.7e-53 214.5 167 65.3
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 2.0e-51 207.6 219 52.5
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 8.9e-47 192.2 355 37.2
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 2.2e-45 187.6 102 85.3
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 1.0e-42 178.7 134 68.7
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.1e-41 175.3 98 84.7
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 2.3e-34 151.0 91 79.1
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 1.9e-33 147.9 170 46.5
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.5e-33 147.5 372 28.8
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 5.6e-33 146.4 74 91.9
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 2.1e-32 144.4 131 58.8
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 6.2e-32 142.9 91 80.2
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 1.3e-26 125.2 264 30.3
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.8e-23 114.8 90 51.1
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 3.1e-23 114.0 80 56.2
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 5.2e-23 113.2 57 93.0
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 6.2e-16 89.7 122 41.0
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 6.9e-15 86.3 51 72.5
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 2.4e-12 77.8 92 50.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.6e-11 75.1 112 43.8
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 7.8e-11 72.8 47 70.2
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 7.8e-11 72.8 43 74.4
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 3.0e-10 70.9 36 86.1
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 5.3e-07 60.1 35 77.1
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 5.8e-06 56.6 48 60.4


User provided reference genes

Program Settings