Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 2.8e-234 815.8 781 100.0
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 2.1e-205 719.9 781 87.5
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 1.1e-201 707.6 781 93.9
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 3.1e-177 626.3 782 81.2
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 6.3e-154 548.9 786 79.6
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 1.0e-87 328.9 343 61.8
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 5.1e-87 326.6 342 61.4
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 5.8e-83 313.2 334 61.1
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 2.2e-82 311.2 341 68.3
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 7.1e-73 279.6 342 64.0
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 4.6e-72 276.9 342 60.5
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.3e-69 268.9 343 65.6
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 1.6e-69 268.5 233 78.1
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 2.0e-67 261.5 345 64.1
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 6.5e-66 256.5 233 75.5
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 6.9e-60 236.5 272 68.8
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 4.6e-56 223.8 358 54.2
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 4.5e-51 207.2 343 54.8
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.4e-49 202.2 340 45.0
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 5.2e-47 193.7 569 33.9
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 2.5e-41 174.9 844 40.0
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 4.0e-39 167.5 916 34.4
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 1.1e-36 159.5 349 38.7
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 1.3e-34 152.5 351 41.3
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.7e-34 152.1 855 42.5
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 1.2e-32 146.0 855 36.7
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 4.7e-32 144.1 354 36.4
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 2.0e-30 138.7 749 27.1
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 2.6e-30 138.3 346 39.3
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 7.5e-30 136.7 208 55.8
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 2.2e-29 135.2 550 31.5
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 2.2e-29 135.2 283 38.5
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 2.2e-29 135.2 348 33.3
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.8e-29 134.8 347 37.5
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 3.7e-29 134.4 751 29.0
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 8.3e-29 133.3 721 35.6
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 1.1e-28 132.9 349 37.2
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 1.1e-28 132.9 347 39.5
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 5.4e-28 130.6 347 37.5
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 1.7e-26 125.6 356 36.0
BcaC09g49104 Brassica carinata HOM05D003806 ORTHO05D004346 2.9e-26 124.8 107 72.9
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 3.8e-26 124.4 340 42.1
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 5.0e-26 124.0 350 32.9
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 8.6e-26 123.2 400 31.2
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 1.1e-25 122.9 344 34.6
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 1.5e-25 122.5 342 36.8
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.9e-25 122.1 349 38.1
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 1.9e-25 122.1 428 31.5
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 3.3e-25 121.3 355 42.3
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 4.2e-25 120.9 312 40.7
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 4.2e-25 120.9 350 33.7
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 7.2e-25 120.2 354 32.2
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 9.5e-25 119.8 317 34.1
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.6e-24 119.0 349 36.1
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 3.6e-24 117.9 317 33.8
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 3.6e-24 117.9 350 33.7
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.4e-23 115.9 349 37.5
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 1.8e-23 115.5 358 39.4
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 2.3e-23 115.2 329 43.2
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 3.0e-23 114.8 353 32.0
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.2e-22 112.8 260 37.3
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.5e-22 112.5 1030 34.8
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 3.4e-22 111.3 350 32.3
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 4.4e-22 110.9 277 33.9
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 5.7e-22 110.5 861 34.8
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 2.2e-21 108.6 350 36.0
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 2.8e-21 108.2 267 33.3
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 8.3e-21 106.7 353 36.8
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 1.8e-20 105.5 339 33.9
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 7.0e-20 103.6 309 38.5
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 1.2e-19 102.8 309 38.2
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 3.5e-19 101.3 201 40.3
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 3.5e-19 101.3 309 30.7
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 5.9e-19 100.5 258 42.2
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 5.9e-19 100.5 202 42.1
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 5.9e-19 100.5 254 45.3
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 1.7e-18 99.0 349 36.7
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 2.3e-18 98.6 349 30.9
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 2.9e-18 98.2 347 29.7
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 3.8e-18 97.8 338 35.8
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.1e-17 96.3 207 38.6
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.5e-17 95.9 197 40.1
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.5e-17 95.9 193 38.9
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 2.5e-17 95.1 303 29.7
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 4.3e-17 94.4 313 30.4
BcaC07g42136 Brassica carinata HOM05D003806 ORTHO05D004346 5.6e-17 94.0 322 41.0
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 5.6e-17 94.0 315 41.0
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 5.6e-17 94.0 170 49.4
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 5.6e-17 94.0 170 49.4
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 7.3e-17 93.6 303 32.0
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.6e-16 92.4 364 32.7
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 2.8e-16 91.7 301 28.9
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 3.6e-16 91.3 266 31.6
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 6.1e-16 90.5 194 38.1
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 6.1e-16 90.5 194 38.1
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 4.0e-15 87.8 408 27.0
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 4.0e-15 87.8 337 30.3
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 5.2e-15 87.4 201 37.3
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 5.2e-15 87.4 306 29.4
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 3.4e-14 84.7 317 31.2
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 4.4e-14 84.3 346 32.9
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 4.4e-14 84.3 319 29.5
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 2.9e-13 81.6 373 35.9
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 6.4e-13 80.5 345 28.4
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 6.4e-13 80.5 361 31.9
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 1.1e-12 79.7 196 37.8
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 1.8e-12 79.0 302 38.4
C01p42510 Brassica napus HOM05D003806 ORTHO05D004346 1.8e-12 79.0 132 45.5
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 1.8e-12 79.0 302 38.4
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 1.8e-12 79.0 349 32.7
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 3.2e-12 78.2 209 40.2
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 3.2e-12 78.2 267 36.0
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 7.0e-12 77.0 199 34.7
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 1.2e-11 76.3 197 36.5
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 1.6e-11 75.9 193 36.8
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 2.7e-11 75.1 344 25.6
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 7.8e-11 73.6 314 29.3
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.0e-10 73.2 206 33.5
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.3e-10 72.8 300 26.7
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 1.1e-09 69.7 195 42.6
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 1.1e-09 69.7 200 31.5
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 2.5e-09 68.6 306 32.7
BcaB01g03995 Brassica carinata HOM05D003806 ORTHO05D004346 4.3e-09 67.8 73 79.5
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.2e-08 66.2 202 34.2
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 1.2e-08 66.2 417 28.1
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.6e-08 65.9 210 33.3
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 3.6e-08 64.7 197 32.0
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 8.0e-08 63.5 141 36.2
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 1.1e-07 63.2 198 31.8
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.1e-07 63.2 197 32.0
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 1.1e-07 63.2 71 47.9
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.1e-07 61.6 317 28.1
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 3.1e-07 61.6 196 31.6
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 4.0e-07 61.2 320 26.2
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.5e-06 59.3 157 49.0
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 2.0e-06 58.9 163 30.1
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 2.0e-06 58.9 498 25.7
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 7.5e-06 57.0 188 30.3


User provided reference genes

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