Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p21010 Brassica napus HOM05D006787 ORTHO05D008366 0.0e+00 1146.7 611 100.0
BolC3t14481H Brassica oleracea HOM05D006787 ORTHO05D008366 0.0e+00 1127.1 606 98.0
A03p17910 Brassica napus HOM05D006787 ORTHO05D008366 9.2e-302 1039.6 633 88.9
BraA03t11058Z Brassica rapa HOM05D000200 ORTHO05D000262 7.1e-286 986.9 567 92.4
Sp4g14240 Schrenkiella parvula HOM05D006787 ORTHO05D008366 2.7e-285 984.9 628 84.2
Thhalv10016356m.g Eutrema salsugineum HOM05D006787 ORTHO05D008366 1.1e-281 973.0 629 84.6
Carub.0004s1319 Capsella rubella HOM05D006787 ORTHO05D008366 1.6e-277 959.1 628 81.7
CARHR125600 Cardamine hirsuta HOM05D006787 ORTHO05D008366 2.9e-271 938.3 629 81.6
AL4G27180 Arabidopsis lyrata HOM05D006787 ORTHO05D008366 9.3e-270 933.3 627 80.5
AT2G31890 Arabidopsis thaliana HOM05D006787 ORTHO05D008366 8.4e-263 910.2 627 78.9
Aa31LG5G5150 Aethionema arabicum HOM05D006787 ORTHO05D008366 8.8e-244 847.0 552 82.4
THA.LOC104800940 Tarenaya hassleriana HOM05D006787 ORTHO05D008366 4.1e-201 705.3 657 63.5
Dinv33252 Davidia involucrata HOM05D006787 ORTHO05D008366 2.9e-194 682.6 553 66.5
Hma1.2p1_0000F.1_g000320 Hydrangea macrophylla HOM05D006787 ORTHO05D008366 2.4e-193 679.5 535 66.7
CiPaw.02G125400 Carya illinoinensis HOM05D006787 ORTHO05D008366 1.3e-191 673.7 546 66.8
Thecc.05G000800 Theobroma cacao HOM05D006787 ORTHO05D008366 5.0e-191 671.8 537 65.9
Manes.01G009700 Manihot esculenta HOM05D006787 ORTHO05D008366 3.6e-189 665.6 538 66.7
Lju124A5G21 Lonicera japonica HOM05D006787 ORTHO05D008366 1.1e-188 664.1 537 66.3
TWI63G1373 Tripterygium wilfordii HOM05D006787 ORTHO05D008366 2.3e-188 662.9 537 67.2
Nn7g37422 Nelumbo nucifera HOM05D006787 ORTHO05D008366 4.0e-188 662.1 528 66.9
Actinidia18386 Actinidia chinensis HOM05D006787 ORTHO05D003440 2.0e-187 659.8 543 66.5
QL10p065815 Quercus lobata HOM05D006787 ORTHO05D008366 9.9e-187 657.5 543 66.5
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 6.4e-186 654.8 522 67.2
TAR636G3644 Trochodendron aralioides HOM05D006787 ORTHO05D008366 6.4e-186 654.8 560 63.4
Potri.017G001600 Populus trichocarpa HOM05D006787 ORTHO05D008366 1.9e-185 653.3 536 66.4
QL10p064688 Quercus lobata HOM05D006787 ORTHO05D008366 9.2e-185 651.0 543 65.7
Prupe.6G118500 Prunus persica HOM05D006787 ORTHO05D008366 1.2e-184 650.6 551 64.6
Haze_11111 Corylus avellana HOM05D006787 ORTHO05D008366 3.5e-184 649.0 523 67.3
Duzib168G0144 Durio zibethinus HOM05D006787 ORTHO05D008366 2.5e-182 642.9 537 63.7
Cpa.g.sc9.243 Carica papaya HOM05D006787 ORTHO05D008366 2.8e-181 639.4 530 66.2
FAN26G1372 Fragaria x ananassa HOM05D006787 ORTHO05D008366 2.8e-181 639.4 565 63.2
Hund22687 Selenicereus undatus HOM05D006787 ORTHO05D008366 5.2e-180 635.2 530 64.5
Sabra17G0005700 Salix brachista HOM05D006787 ORTHO05D008366 1.5e-179 633.6 534 65.4
Glyma.07G076000 Glycine max HOM05D006787 ORTHO05D008366 4.9e-178 628.6 536 64.0
Atru.chr3.1966 Acer truncatum HOM05D006787 ORTHO05D008366 1.1e-177 627.5 604 58.9
MBI10_g27212_MAGBIO Magnolia biondii HOM05D006787 ORTHO05D008366 1.1e-177 627.5 548 60.9
COL.COLO4_07294 Corchorus olitorius HOM05D006787 ORTHO05D008366 3.2e-177 625.9 606 57.8
Eucgr.H00246 Eucalyptus grandis HOM05D006787 ORTHO05D008366 9.2e-177 624.4 570 61.6
Gohir.D06G185000 Gossypium hirsutum HOM05D006787 ORTHO05D008366 6.0e-176 621.7 566 59.9
PGR142G3161 Punica granatum HOM05D006787 ORTHO05D008366 6.0e-176 621.7 628 58.1
CANSAT56G3581 Cannabis sativa HOM05D006787 ORTHO05D008366 1.3e-175 620.5 545 63.3
MSTRG.11562 Avicennia marina HOM05D006787 ORTHO05D008366 2.3e-175 619.8 534 64.0
VMungo0331G0945 Vigna mungo HOM05D006787 ORTHO05D008366 8.7e-175 617.8 562 60.1
CSS0000740 Camellia sinensis var. sinensis HOM05D006787 ORTHO05D008366 1.5e-174 617.1 552 62.9
Glyma.03G015700 Glycine max HOM05D006787 ORTHO05D008366 1.9e-174 616.7 533 63.6
FAN23G2311 Fragaria x ananassa HOM05D006787 ORTHO05D008366 2.8e-173 612.8 564 61.0
RcHm_v2.0_Chr2g0084391 Rosa chinensis HOM05D006787 ORTHO05D008366 2.8e-173 612.8 565 62.1
ClCG06G009900 Citrullus lanatus HOM05D006787 ORTHO05D008366 1.8e-172 610.1 541 61.7
EL10Ac3g06180 Beta vulgaris HOM05D006787 ORTHO05D008366 2.4e-172 609.8 540 61.3
Gohir.A06G175100 Gossypium hirsutum HOM05D006787 ORTHO05D008366 6.9e-172 608.2 557 60.1
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.2e-171 607.4 561 61.0
FvH4_1g00100 Fragaria vesca HOM05D006787 ORTHO05D008366 1.5e-171 607.1 562 60.9
Lalb_Chr10g0097341 Lupinus albus HOM05D006787 ORTHO05D008366 7.6e-171 604.7 558 59.0
Ciclev10019183m.g Citrus clementina HOM05D006787 ORTHO05D008366 9.9e-171 604.4 532 63.2
Hma1.2p1_0000F.1_g000310 Hydrangea macrophylla HOM05D006787 ORTHO05D008366 1.7e-170 603.6 535 61.3
Gorai.010G216300 Gossypium raimondii HOM05D006787 ORTHO05D008366 2.2e-170 603.2 566 58.8
Phvul.010G093100 Phaseolus vulgaris HOM05D006787 ORTHO05D008366 2.2e-170 603.2 539 61.6
PSO357G0106 Papaver somniferum HOM05D006787 ORTHO05D008366 1.1e-169 600.9 544 60.5
Solyc12g017510.2 Solanum lycopersicum HOM05D006787 ORTHO05D008366 1.4e-169 600.5 538 62.8
Migut.O00275 Erythranthe guttata HOM05D006787 ORTHO05D008366 1.9e-169 600.1 560 60.7
Lj3g0015930 Lotus japonicus HOM05D006787 ORTHO05D008366 1.9e-169 600.1 536 60.8
AUR62023690 Chenopodium quinoa HOM05D006787 ORTHO05D008366 2.1e-168 596.7 523 60.6
MD11G1156300 Malus domestica HOM05D006787 ORTHO05D008366 6.0e-168 595.1 548 61.9
Sopen12g008290 Solanum pennellii HOM05D006787 ORTHO05D008366 6.0e-168 595.1 538 62.8
CAN.G207.7 Capsicum annuum HOM05D006787 ORTHO05D008366 1.1e-166 590.9 537 61.5
Lsat_1_v5_gn_6_92560 Lactuca sativa HOM05D006787 ORTHO05D008366 4.3e-166 589.0 523 59.8
Medtr8g432340 Medicago truncatula HOM05D006787 ORTHO05D008366 2.8e-165 586.3 548 60.0
Nitab4.5_0006083g0010 Nicotiana tabacum HOM05D006787 ORTHO05D008366 6.2e-165 585.1 556 58.1
Ca_25786_v3 Cicer arietinum L. HOM05D006787 ORTHO05D008366 4.0e-164 582.4 563 57.5
arahy.Tifrunner.gnm1.ann1.RN5NMY Arachis hypogaea HOM05D006787 ORTHO05D008366 5.3e-164 582.0 579 56.8
arahy.Tifrunner.gnm1.ann1.M1INQM Arachis hypogaea HOM05D006787 ORTHO05D008366 2.0e-163 580.1 575 56.9
TPR.G1526 Trifolium pratense HOM05D006787 ORTHO05D008366 2.0e-163 580.1 527 59.8
PGSC0003DMG400006459 Solanum tuberosum HOM05D006787 ORTHO05D008366 4.5e-163 578.9 540 59.8
SGA_v2.0_scaffold25G10734 Striga asiatica HOM05D006787 ORTHO05D008366 5.8e-163 578.6 544 60.3
Sed0010252 Sechium edule HOM05D006787 ORTHO05D008366 1.1e-161 574.3 539 58.3
Sc19g0002430 Simmondsia chinensis HOM05D006787 ORTHO05D008366 1.1e-161 574.3 555 57.8
Nitab4.5_0005148g0010 Nicotiana tabacum HOM05D006787 ORTHO05D008366 1.4e-161 573.9 554 59.4
Cc03_g16180 Coffea canephora HOM05D006787 ORTHO05D008366 2.4e-161 573.2 534 60.5
Aqoxy4G00084 Aquilegia oxysepala HOM05D006787 ORTHO05D008366 7.1e-161 571.6 526 59.5
Peaxi162Scf00057g01911 Petunia axillaris HOM05D006787 ORTHO05D008366 4.3e-158 562.4 537 59.0
HanXRQChr12g0374641 Helianthus annuus HOM05D006787 ORTHO05D008366 1.4e-156 557.4 525 60.6
unitig_22.g5322 Utricularia gibba HOM05D006787 ORTHO05D008366 9.0e-156 554.7 523 60.6
AUR62002496 Chenopodium quinoa HOM05D006787 ORTHO05D008366 1.5e-155 553.9 466 62.7
Oeu014980.1 Olea europaea HOM05D006787 ORTHO05D008366 9.9e-155 551.2 494 63.0
SalBow5G4178 Salvia bowleyana HOM05D006787 ORTHO05D008366 1.7e-154 550.4 527 59.8
CsaV3_2G011300 Cucumis sativus L. HOM05D006787 ORTHO05D008366 2.5e-153 546.6 546 56.0
Zm00001eb120920 Zea mays HOM05D006787 ORTHO05D008366 9.3e-153 544.7 533 57.2
HPP92_011440 Vanilla planifolia HOM05D006787 ORTHO05D008366 3.5e-152 542.7 533 57.2
MELO3C008513.2 Cucumis melo HOM05D006787 ORTHO05D008366 4.6e-152 542.3 567 54.3
GSVIVG01038263001 Vitis vinifera HOM05D006787 ORTHO05D008366 3.0e-151 539.7 399 70.4
ATR0743G046 Amborella trichopoda HOM05D006787 ORTHO05D008366 2.5e-150 536.6 566 52.7
ECA248G2491 Erigeron canadensis HOM05D006787 ORTHO05D008366 8.2e-149 531.6 538 58.4
COL.COLO4_16044 Corchorus olitorius HOM05D006787 ORTHO05D008366 2.0e-147 526.9 516 54.8
Psat4g152520 Pisum sativum HOM05D006787 ORTHO05D008366 1.6e-144 517.3 550 52.9
vmacro00728 Vaccinium macrocarpon HOM05D006787 ORTHO05D008366 1.6e-144 517.3 394 69.5
Os03g0425000 Oryza sativa ssp. japonica HOM05D006787 ORTHO05D008366 1.0e-143 514.6 508 56.7
TPR.G9807 Trifolium pratense HOM05D006787 ORTHO05D008366 1.8e-127 460.7 553 47.9
BcaB01g04009 Brassica carinata HOM05D006787 ORTHO05D008366 3.9e-119 433.0 237 92.0
SEGI_12983 Sequoiadendron giganteum HOM05D006787 ORTHO05D008366 6.7e-111 405.6 586 43.5
Mapoly0069s0042 Marchantia polymorpha HOM05D006787 ORTHO05D008366 3.3e-65 253.8 592 33.3
Mapoly0276s0001 Marchantia polymorpha HOM05D006787 ORTHO05D008366 3.3e-65 253.8 592 33.3
BcaC04g19536 Brassica carinata HOM05D006787 ORTHO05D008366 4.2e-60 236.9 139 87.8
Pp3c3_28000 Physcomitrium patens HOM05D006787 ORTHO05D008366 7.8e-59 232.6 390 38.7
AagrBONN_evm.TU.Sc2ySwM_344.5468 Anthoceros agrestis HOM05D006787 ORTHO05D008366 2.7e-43 181.0 519 32.2
AagrBONN_evm.TU.Sc2ySwM_344.5464 Anthoceros agrestis HOM05D006787 ORTHO05D008366 3.8e-37 160.6 189 49.2
SMO137G0272 Selaginella moellendorffii HOM05D006787 ORTHO05D008366 1.7e-29 135.2 189 45.0
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 7.9e-19 99.8 112 48.2
SMO134G0111 Selaginella moellendorffii HOM05D006787 ORTHO05D008366 1.4e-12 79.0 285 28.4
VMungo0720G2947 Vigna mungo HOM05D006787 ORTHO05D008366 5.5e-12 77.0 108 38.9
SMO137G0070 Selaginella moellendorffii HOM05D006787 ORTHO05D008366 7.9e-11 73.2 99 51.5
CBR_g41140 Chara braunii HOM05D006787 ORTHO05D008366 1.5e-09 68.9 159 30.2


User provided reference genes

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