Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p16540 Brassica napus HOM05D004186 ORTHO05D011383 4.6e-79 297.7 142 100.0
BcaC01g06364 Brassica carinata HOM05D004186 ORTHO05D011383 1.4e-38 163.3 79 97.5
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 4.7e-31 138.3 96 71.9
BcaC01g06358 Brassica carinata HOM05D004186 ORTHO05D011383 2.6e-29 132.5 59 100.0
BolC8t49341H Brassica oleracea HOM05D004186 ORTHO05D011383 1.3e-25 120.2 64 89.1
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 1.5e-24 116.7 94 61.7
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 1.3e-20 103.6 86 60.5
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 1.3e-20 103.6 86 60.5
BcaC07g36866 Brassica carinata HOM05D012015 ORTHO05D011383 3.7e-20 102.1 53 92.5
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 1.8e-19 99.8 130 45.4
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 2.4e-19 99.4 85 58.8
C08p17140 Brassica napus HOM05D004186 ORTHO05D011383 2.4e-19 99.4 53 86.8
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 5.0e-17 91.7 89 55.1
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 2.5e-16 89.4 85 54.1
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 3.3e-16 89.0 92 48.9
BcaC07g38783 Brassica carinata HOM05D002592 ORTHO05D011383 1.6e-15 86.7 46 84.8
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 2.8e-15 85.9 92 48.9
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 2.8e-15 85.9 92 48.9
C08p01710 Brassica napus HOM05D002592 ORTHO05D011383 8.0e-15 84.3 44 88.6
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 1.0e-14 84.0 53 75.5
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 2.3e-14 82.8 85 49.4
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 3.0e-14 82.4 85 49.4
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 4.0e-14 82.0 85 49.4
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 4.0e-14 82.0 85 49.4
BcaC05g27566 Brassica carinata HOM05D001159 ORTHO05D011383 1.5e-13 80.1 53 73.6
C05p35490 Brassica napus HOM05D001159 ORTHO05D011383 1.5e-13 80.1 53 73.6
C09p03000 Brassica napus HOM05D001159 ORTHO05D011383 2.0e-13 79.7 53 71.7
BolC9t53230H Brassica oleracea HOM05D001159 ORTHO05D011383 2.0e-13 79.7 53 71.7
BolC7t45165H Brassica oleracea HOM05D001159 ORTHO05D011383 3.4e-13 79.0 53 73.6
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 5.7e-13 78.2 86 48.8
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 2.8e-12 75.9 78 48.7
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 3.7e-12 75.5 85 47.1
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 1.1e-11 73.9 85 44.7
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 5.4e-11 71.6 80 45.0
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 1.2e-10 70.5 80 43.8
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.6e-10 70.1 85 42.4
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 1.6e-10 70.1 85 45.9
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 2.0e-10 69.7 80 43.8
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.7e-10 69.3 88 40.9
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 3.5e-10 68.9 85 42.4
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 3.5e-10 68.9 101 39.6
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 3.5e-10 68.9 71 49.3
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 3.5e-10 68.9 85 41.2
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 3.5e-10 68.9 85 41.2
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 4.5e-10 68.6 84 42.9
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 1.0e-09 67.4 79 48.1
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 2.3e-09 66.2 85 41.2
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 3.8e-09 65.5 85 40.0
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 5.0e-09 65.1 85 42.4
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 6.6e-09 64.7 76 44.7
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 6.6e-09 64.7 79 40.5
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 8.6e-09 64.3 85 41.2
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 8.6e-09 64.3 85 42.4
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 8.6e-09 64.3 85 42.4
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.1e-08 63.9 79 40.5
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 1.1e-08 63.9 86 44.2
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 1.1e-08 63.9 89 40.4
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 1.5e-08 63.5 85 40.0
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 1.5e-08 63.5 86 41.9
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 1.9e-08 63.2 89 37.1
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 1.9e-08 63.2 85 37.6
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 3.3e-08 62.4 97 39.2
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 4.3e-08 62.0 85 36.5
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 5.6e-08 61.6 77 45.5
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 5.6e-08 61.6 85 40.0
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 5.6e-08 61.6 83 39.8
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 1.2e-07 60.5 76 46.1
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 2.1e-07 59.7 83 45.8
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 2.1e-07 59.7 83 45.8
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 2.8e-07 59.3 85 37.6
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 3.6e-07 58.9 82 39.0
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 3.6e-07 58.9 85 38.8
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 4.7e-07 58.5 79 38.0
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 4.7e-07 58.5 84 38.1
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 1.0e-06 57.4 84 38.1
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 1.8e-06 56.6 84 40.5
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 1.8e-06 56.6 92 39.1
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 1.8e-06 56.6 76 44.7
BolC2t11511H Brassica oleracea HOM05D012015 ORTHO05D011383 2.3e-06 56.2 31 90.3
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 2.3e-06 56.2 77 44.2
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 4.0e-06 55.5 58 51.7
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 5.2e-06 55.1 85 38.8
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 5.2e-06 55.1 80 40.0
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 5.2e-06 55.1 87 37.9
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 6.8e-06 54.7 85 38.8


User provided reference genes

Program Settings