Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p15060 Brassica napus HOM05D004854 ORTHO05D005854 1.8e-48 196.1 99 100.0
BolC3t13948H Brassica oleracea HOM05D004854 ORTHO05D005854 6.3e-22 107.8 58 94.8
Sp6g19020 Schrenkiella parvula HOM05D004854 ORTHO05D005854 1.7e-19 99.8 55 96.4
Thhalv10026301m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 5.0e-19 98.2 84 67.9
Thhalv10015037m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 2.5e-18 95.9 55 92.7
AL8G33260 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 3.2e-18 95.5 55 94.5
BcaC04g19981 Brassica carinata HOM05D004854 ORTHO05D005854 3.2e-18 95.5 55 94.5
Carub.0007s1506 Capsella rubella HOM05D004854 ORTHO05D005854 3.2e-18 95.5 56 89.3
Sp7g23910 Schrenkiella parvula HOM05D004854 ORTHO05D005854 3.2e-18 95.5 61 85.2
THA.LOC104813509 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 5.5e-18 94.7 54 88.9
THA.LOC104811780 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 7.2e-18 94.4 55 85.5
BraA02t05931Z Brassica rapa HOM05D004854 ORTHO05D005854 9.4e-18 94.0 55 92.7
CARHR233360 Cardamine hirsuta HOM05D004854 ORTHO05D005854 9.4e-18 94.0 67 74.6
BcaB05g22334 Brassica carinata HOM05D004854 ORTHO05D005854 1.2e-17 93.6 55 90.9
BcaC03g14166 Brassica carinata HOM05D004854 ORTHO05D005854 2.1e-17 92.8 55 90.9
Carub.0008s1780 Capsella rubella HOM05D004854 ORTHO05D005854 4.7e-17 91.7 55 87.3
AL7G27120 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 6.1e-17 91.3 62 82.3
A02p08620 Brassica napus HOM05D004854 ORTHO05D005854 1.4e-16 90.1 54 90.7
BcaB08g36089 Brassica carinata HOM05D004854 ORTHO05D005854 1.8e-16 89.7 61 80.3
C09p49130 Brassica napus HOM05D004854 ORTHO05D005854 3.0e-16 89.0 53 90.6
BolC9t57762H Brassica oleracea HOM05D004854 ORTHO05D005854 3.0e-16 89.0 53 90.6
BraA10t43555Z Brassica rapa HOM05D004854 ORTHO05D005854 3.0e-16 89.0 53 90.6
CARHR271090 Cardamine hirsuta HOM05D004854 ORTHO05D005854 3.9e-16 88.6 55 85.5
AT5G57290 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 6.7e-16 87.8 49 95.9
AT4G25890 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 8.8e-16 87.4 62 77.4
A10p14720 Brassica napus HOM05D004854 ORTHO05D005854 1.5e-15 86.7 53 88.7
C02p14390 Brassica napus HOM05D004854 ORTHO05D005854 2.0e-15 86.3 53 86.8
BolC2t07563H Brassica oleracea HOM05D004854 ORTHO05D005854 2.0e-15 86.3 53 86.8
Atru.chr12.1305 Acer truncatum HOM05D004854 ORTHO05D005854 7.4e-15 84.3 56 80.4
Ciclev10002863m.g Citrus clementina HOM05D004854 ORTHO05D005854 1.3e-14 83.6 63 79.4
DCAR_003035 Daucus carota HOM05D004854 ORTHO05D005854 1.3e-14 83.6 56 80.4
Glyma.05G174300 Glycine max HOM05D004854 ORTHO05D005854 1.3e-14 83.6 67 68.7
Glyma.08G131500 Glycine max HOM05D004854 ORTHO05D005854 1.7e-14 83.2 67 67.2
CANSAT11G1984 Cannabis sativa HOM05D004854 ORTHO05D005854 2.8e-14 82.4 54 83.3
Aa31LG3G13170 Aethionema arabicum HOM05D004854 ORTHO05D005854 3.7e-14 82.0 55 83.6
Phvul.002G259300 Phaseolus vulgaris HOM05D004854 ORTHO05D005854 3.7e-14 82.0 67 65.7
Sed0001835 Sechium edule HOM05D004854 ORTHO05D005854 6.3e-14 81.3 66 68.2
ClCG11G011930 Citrullus lanatus HOM05D004854 ORTHO05D005854 8.2e-14 80.9 55 76.4
Prupe.1G079500 Prunus persica HOM05D004854 ORTHO05D005854 1.4e-13 80.1 55 76.4
AUR62026626 Chenopodium quinoa HOM05D004854 ORTHO05D005854 1.8e-13 79.7 67 62.7
MELO3C003999.2 Cucumis melo HOM05D004854 ORTHO05D005854 2.4e-13 79.3 55 74.5
VMungo0251G0447 Vigna mungo HOM05D004854 ORTHO05D005854 2.4e-13 79.3 56 71.4
Actinidia29956 Actinidia chinensis HOM05D004854 ORTHO05D005854 3.1e-13 79.0 56 75.0
CiPaw.08G034100 Carya illinoinensis HOM05D004854 ORTHO05D005854 3.1e-13 79.0 55 80.0
Migut.J00819 Erythranthe guttata HOM05D004854 ORTHO05D005854 3.1e-13 79.0 56 76.8
Sed0005886 Sechium edule HOM05D004854 ORTHO05D005854 4.1e-13 78.6 55 78.2
CDE05G0266 Ceratophyllum demersum HOM05D000177 ORTHO05D008165 5.3e-13 78.2 52 78.8
CDE05G2165 Ceratophyllum demersum HOM05D004854 ORTHO05D005854 5.3e-13 78.2 52 78.8
Psat7g058720 Pisum sativum HOM05D004854 ORTHO05D005854 5.3e-13 78.2 56 69.6
QL11p004841 Quercus lobata HOM05D004854 ORTHO05D005854 5.3e-13 78.2 55 76.4
TWI38G2070 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 5.3e-13 78.2 67 62.7
Cpa.g.sc95.32 Carica papaya HOM05D004854 ORTHO05D005854 7.0e-13 77.8 56 73.2
AUR62034880 Chenopodium quinoa HOM05D004854 ORTHO05D005854 9.1e-13 77.4 67 61.2
Manes.06G021300 Manihot esculenta HOM05D004854 ORTHO05D005854 9.1e-13 77.4 53 84.9
Oeu064534.1 Olea europaea HOM05D004854 ORTHO05D005854 9.1e-13 77.4 55 78.2
Potri.009G032600 Populus trichocarpa HOM05D004854 ORTHO05D005854 1.2e-12 77.0 59 76.3
arahy.Tifrunner.gnm1.ann1.9B8HPN Arachis hypogaea HOM05D004854 ORTHO05D005854 1.6e-12 76.6 66 63.6
arahy.Tifrunner.gnm1.ann1.P9UE85 Arachis hypogaea HOM05D004854 ORTHO05D005854 1.6e-12 76.6 66 63.6
CAN.G86.2 Capsicum annuum HOM05D004854 ORTHO05D005854 1.6e-12 76.6 53 77.4
TWI38G1790 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 1.6e-12 76.6 68 61.8
Ah.16g108570 Amaranthus hybridus HOM05D004854 ORTHO05D005854 2.0e-12 76.3 67 62.7
arahy.Tifrunner.gnm1.ann1.P39ID1 Arachis hypogaea HOM05D004854 ORTHO05D005854 2.0e-12 76.3 67 61.2
PSO423G0276 Papaver somniferum HOM05D004854 ORTHO05D005854 2.0e-12 76.3 56 69.6
Sc26g0002890 Simmondsia chinensis HOM05D004854 ORTHO05D005854 2.0e-12 76.3 56 71.4
HPP92_026146 Vanilla planifolia HOM05D003573 ORTHO05D004204 2.0e-12 76.3 56 69.6
Peaxi162Scf00324g00719 Petunia axillaris HOM05D004854 ORTHO05D005854 2.6e-12 75.9 53 79.2
CsaV3_2G008580 Cucumis sativus L. HOM05D004854 ORTHO05D005854 3.5e-12 75.5 54 72.2
Nitab4.5_0000074g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 3.5e-12 75.5 53 79.2
Nitab4.5_0012849g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 3.5e-12 75.5 53 79.2
MSTRG.26532 Avicennia marina HOM05D004854 ORTHO05D005854 4.5e-12 75.1 56 73.2
Lj4g0022898 Lotus japonicus HOM05D004854 ORTHO05D005854 4.5e-12 75.1 54 72.2
MD16G1253100 Malus domestica HOM05D004854 ORTHO05D005854 4.5e-12 75.1 54 74.1
PGSC0003DMG400008513 Solanum tuberosum HOM05D004854 ORTHO05D005854 4.5e-12 75.1 53 77.4
TWI18G0069 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 4.5e-12 75.1 54 72.2
Ca_17781_v3 Cicer arietinum L. HOM05D004854 ORTHO05D005854 5.9e-12 74.7 56 66.1
SGA_v2.0_scaffold21G09635 Striga asiatica HOM05D004854 ORTHO05D005854 5.9e-12 74.7 56 73.2
MD13G1245200 Malus domestica HOM05D004854 ORTHO05D005854 7.7e-12 74.3 55 72.7
vmacro20836 Vaccinium macrocarpon HOM05D004854 ORTHO05D005854 7.7e-12 74.3 54 74.1
Ah.05g168230 Amaranthus hybridus HOM05D004854 ORTHO05D005854 1.0e-11 73.9 67 61.2
arahy.Tifrunner.gnm1.ann1.63P7R9 Arachis hypogaea HOM05D000970 ORTHO05D000788 1.0e-11 73.9 53 71.7
Oeu000974.1 Olea europaea HOM05D004854 ORTHO05D005854 1.0e-11 73.9 67 59.7
PSO596G0050 Papaver somniferum HOM05D004854 ORTHO05D005854 1.0e-11 73.9 56 69.6
PGR044G2628 Punica granatum HOM05D004854 ORTHO05D005854 1.0e-11 73.9 53 75.5
PGR109G0004 Punica granatum HOM05D004854 ORTHO05D005854 1.0e-11 73.9 53 75.5
Lalb_Chr13g0295841 Lupinus albus HOM05D004854 ORTHO05D005854 1.3e-11 73.6 54 70.4
Medtr8g089790 Medicago truncatula HOM05D004854 ORTHO05D005854 1.3e-11 73.6 56 62.5
Solyc07g009330.4 Solanum lycopersicum HOM05D004854 ORTHO05D005854 1.3e-11 73.6 53 75.5
GSVIVG01010910001 Vitis vinifera HOM05D004854 ORTHO05D005854 1.3e-11 73.6 52 76.9
CSS0022850 Camellia sinensis var. sinensis HOM05D004854 ORTHO05D005854 1.7e-11 73.2 52 75.0
Dinv25401 Davidia involucrata HOM05D004854 ORTHO05D005854 1.7e-11 73.2 54 74.1
Duzib150G0904 Durio zibethinus HOM05D004854 ORTHO05D005854 2.2e-11 72.8 53 71.7
SEGI_03932 Sequoiadendron giganteum HOM05D004854 ORTHO05D005854 2.2e-11 72.8 62 64.5
arahy.Tifrunner.gnm1.ann1.90PU0B Arachis hypogaea HOM05D004854 ORTHO05D005854 2.9e-11 72.4 67 56.7
ECA247G3496 Erigeron canadensis HOM05D004854 ORTHO05D005854 2.9e-11 72.4 55 74.5
Eucgr.C02261 Eucalyptus grandis HOM05D004854 ORTHO05D005854 2.9e-11 72.4 52 75.0
Eucgr.C02263 Eucalyptus grandis HOM05D004854 ORTHO05D005854 2.9e-11 72.4 52 75.0
FAN22G0664 Fragaria x ananassa HOM05D004854 ORTHO05D005854 2.9e-11 72.4 53 73.6
Potri.003G010200 Populus trichocarpa HOM05D004854 ORTHO05D005854 2.9e-11 72.4 67 62.7
PGR142G3975 Punica granatum HOM05D004854 ORTHO05D005854 2.9e-11 72.4 56 67.9
TAR625G0051 Trochodendron aralioides HOM05D004854 ORTHO05D005854 2.9e-11 72.4 52 75.0
MSTRG.19386 Avicennia marina HOM05D004854 ORTHO05D005854 3.8e-11 72.0 56 71.4
HanXRQChr10g0297881 Helianthus annuus HOM05D004854 ORTHO05D005854 3.8e-11 72.0 55 74.5
MBI13_g31550_MAGBIO Magnolia biondii HOM05D004854 ORTHO05D005854 3.8e-11 72.0 64 62.5
Sopen07g005080 Solanum pennellii HOM05D004854 ORTHO05D005854 3.8e-11 72.0 53 73.6
Lsat_1_v5_gn_9_31040 Lactuca sativa HOM05D004854 ORTHO05D005854 5.0e-11 71.6 55 72.7
FvH4_4g07630 Fragaria vesca HOM05D004854 ORTHO05D005854 6.5e-11 71.2 51 74.5
FAN07G2001 Fragaria x ananassa HOM05D004854 ORTHO05D005854 6.5e-11 71.2 51 74.5
FAN12G2445 Fragaria x ananassa HOM05D004854 ORTHO05D005854 6.5e-11 71.2 51 74.5
FAN17G2475 Fragaria x ananassa HOM05D004854 ORTHO05D005854 6.5e-11 71.2 51 74.5
Lalb_Chr07g0185421 Lupinus albus HOM05D004854 ORTHO05D005854 6.5e-11 71.2 54 70.4
PSO596G0067 Papaver somniferum HOM05D004854 ORTHO05D005854 6.5e-11 71.2 56 67.9
Dinv26446 Davidia involucrata HOM05D004854 ORTHO05D005854 8.5e-11 70.9 53 73.6
Oeu044701.1 Olea europaea HOM05D004854 ORTHO05D005854 8.5e-11 70.9 66 60.6
SGA_v2.0_scaffold41G15867 Striga asiatica HOM05D004854 ORTHO05D005854 8.5e-11 70.9 55 70.9
unitig_899.g15189 Utricularia gibba HOM05D004854 ORTHO05D005854 8.5e-11 70.9 66 62.1
Rhsim01G0120500 Rhododendron simsii HOM05D004854 ORTHO05D005854 1.1e-10 70.5 52 73.1
Zm00001eb226990 Zea mays HOM05D004854 ORTHO05D005854 1.1e-10 70.5 60 63.3
Actinidia39348 Actinidia chinensis HOM05D000406 ORTHO05D003425 1.5e-10 70.1 84 53.6
Cc06_g22110 Coffea canephora HOM05D004854 ORTHO05D005854 1.5e-10 70.1 65 56.9
Sabra09G0023200 Salix brachista HOM05D004854 ORTHO05D005854 1.5e-10 70.1 56 71.4
Thecc.09G180300 Theobroma cacao HOM05D004854 ORTHO05D005854 1.9e-10 69.7 54 70.4
Cfa013427 Carpinus fangiana HOM05D004854 ORTHO05D005854 2.5e-10 69.3 52 73.1
Eucgr.A01410 Eucalyptus grandis HOM05D004854 ORTHO05D005854 2.5e-10 69.3 51 72.5
arahy.Tifrunner.gnm1.ann1.XNR1AK Arachis hypogaea HOM05D004854 ORTHO05D005854 3.2e-10 68.9 65 53.8
Dinv25400 Davidia involucrata HOM05D004854 ORTHO05D005854 3.2e-10 68.9 51 72.5
Gohir.A05G003400 Gossypium hirsutum HOM05D004854 ORTHO05D005854 3.2e-10 68.9 54 66.7
Gohir.D05G003800 Gossypium hirsutum HOM05D004854 ORTHO05D005854 3.2e-10 68.9 54 66.7
Gorai.009G003400 Gossypium raimondii HOM05D004854 ORTHO05D005854 3.2e-10 68.9 54 66.7
PSO423G0052 Papaver somniferum HOM05D004854 ORTHO05D005854 3.2e-10 68.9 56 66.1
Hund26676 Selenicereus undatus HOM05D004854 ORTHO05D005854 4.2e-10 68.6 68 55.9
Oeu044703.1 Olea europaea HOM05D004854 ORTHO05D005854 5.5e-10 68.2 64 60.9
TAR636G3485 Trochodendron aralioides HOM05D004854 ORTHO05D005854 1.2e-09 67.0 45 77.8
Zm00001eb272850 Zea mays HOM05D004854 ORTHO05D005854 1.6e-09 66.6 61 59.0
arahy.Tifrunner.gnm1.ann1.AP25S4 Arachis hypogaea HOM05D004854 ORTHO05D005854 2.1e-09 66.2 65 52.3
Os01g0231700 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 2.1e-09 66.2 55 63.6
Os06g0701400 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 2.1e-09 66.2 67 55.2
RcHm_v2.0_Chr4g0400241 Rosa chinensis HOM05D004854 ORTHO05D005854 3.6e-09 65.5 52 69.2
SalBow5G3614 Salvia bowleyana HOM05D004854 ORTHO05D005854 4.7e-09 65.1 66 60.6
Sabra03G0005200 Salix brachista HOM05D004854 ORTHO05D005854 6.1e-09 64.7 54 66.7
TPR.G6298 Trifolium pratense HOM05D004854 ORTHO05D005854 1.4e-08 63.5 53 62.3
Migut.L01900 Erythranthe guttata HOM05D004854 ORTHO05D005854 1.8e-08 63.2 46 71.7
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 2.3e-08 62.8 62 56.5
ATR0626G247 Amborella trichopoda HOM05D004854 ORTHO05D005854 3.0e-08 62.4 46 71.7
RcHm_v2.0_Chr1g0341131 Rosa chinensis HOM05D004854 ORTHO05D005854 3.0e-08 62.4 50 70.0
Thecc.01G294400 Theobroma cacao HOM05D004854 ORTHO05D005854 3.0e-08 62.4 56 60.7
Lj6g0003516 Lotus japonicus HOM05D004854 ORTHO05D005854 1.2e-07 60.5 66 48.5
Pp3c22_2920 Physcomitrium patens HOM05D004854 ORTHO05D005854 2.0e-07 59.7 68 51.5
Pp3c21_16160 Physcomitrium patens HOM05D004854 ORTHO05D005854 3.3e-07 58.9 68 50.0
SGA_v2.0_scaffold46G17340 Striga asiatica HOM05D004854 ORTHO05D005854 4.8e-06 55.1 67 49.3


User provided reference genes

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