Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p14210 Brassica napus HOM05D005995 ORTHO05D007362 6.1e-64 247.3 122 100.0
BraA03t10524Z Brassica rapa HOM05D005995 ORTHO05D007362 7.3e-49 197.2 99 100.0
BcaNung06849 Brassica carinata HOM05D002227 ORTHO05D007362 1.2e-48 196.4 120 83.3
BcaC01g06637 Brassica carinata HOM05D005995 ORTHO05D007362 2.1e-48 195.7 99 99.0
A03p12120 Brassica napus HOM05D005995 ORTHO05D007362 2.1e-48 195.7 99 99.0
BolC3t13867H Brassica oleracea HOM05D005995 ORTHO05D007362 8.0e-48 193.7 99 98.0
BcaB01g04505 Brassica carinata HOM05D005995 ORTHO05D007362 1.1e-47 193.4 99 97.0
AL8G34810 Arabidopsis lyrata HOM05D005995 ORTHO05D007362 7.5e-46 187.2 117 82.1
Sp6g20270 Schrenkiella parvula HOM05D005995 ORTHO05D007362 9.8e-46 186.8 117 81.2
AT5G58575 Arabidopsis thaliana HOM05D005995 ORTHO05D007362 1.7e-45 186.0 117 79.5
CARHR272410 Cardamine hirsuta HOM05D005995 ORTHO05D007362 2.9e-45 185.3 117 80.3
Carub.0008s1918 Capsella rubella HOM05D005995 ORTHO05D007362 1.1e-44 183.3 117 80.3
Thhalv10014805m.g Eutrema salsugineum HOM05D005995 ORTHO05D007362 1.1e-44 183.3 117 79.5
Aa31LG11G350 Aethionema arabicum HOM05D005995 ORTHO05D007362 5.1e-42 174.5 117 76.1
Actinidia23218 Actinidia chinensis HOM05D005995 ORTHO05D007362 1.4e-36 156.4 113 67.3
Actinidia02782 Actinidia chinensis HOM05D005995 ORTHO05D007362 5.4e-36 154.5 113 65.5
THA.LOC104799390 Tarenaya hassleriana HOM05D005995 ORTHO05D007362 5.4e-36 154.5 105 71.4
CANSAT54G2854 Cannabis sativa HOM05D005995 ORTHO05D007362 2.1e-35 152.5 113 63.7
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 1.0e-34 150.2 113 64.6
CiPaw.14G056700 Carya illinoinensis HOM05D005995 ORTHO05D007362 1.3e-34 149.8 113 64.6
Manes.17G003200 Manihot esculenta HOM05D005995 ORTHO05D007362 1.7e-34 149.4 113 64.6
Cc01_g14560 Coffea canephora HOM05D005995 ORTHO05D007362 5.1e-34 147.9 113 63.7
Haze_24375 Corylus avellana HOM05D005995 ORTHO05D007362 5.1e-34 147.9 113 63.7
Glyma.11G168600 Glycine max HOM05D005995 ORTHO05D007362 5.1e-34 147.9 113 63.7
Atru.chr3.4142 Acer truncatum HOM05D005995 ORTHO05D007362 6.6e-34 147.5 113 65.5
Gohir.A13G233500 Gossypium hirsutum HOM05D005995 ORTHO05D007362 1.9e-33 146.0 111 63.1
Sopen06g033540 Solanum pennellii HOM05D005995 ORTHO05D007362 5.6e-33 144.4 117 62.4
PGSC0003DMG400030447 Solanum tuberosum HOM05D005995 ORTHO05D007362 5.6e-33 144.4 117 62.4
arahy.Tifrunner.gnm1.ann1.SCP5PP Arachis hypogaea HOM05D005995 ORTHO05D007362 7.3e-33 144.1 113 62.8
Sabra16G0173300 Salix brachista HOM05D005995 ORTHO05D007362 7.3e-33 144.1 113 65.5
Aqoxy4G02443 Aquilegia oxysepala HOM05D005995 ORTHO05D007362 9.6e-33 143.7 114 59.6
Potri.001G279700 Populus trichocarpa HOM05D005995 ORTHO05D007362 9.6e-33 143.7 113 66.4
VMungo0540G0986 Vigna mungo HOM05D005995 ORTHO05D007362 9.6e-33 143.7 113 61.9
Cpa.g.sc2.418 Carica papaya HOM05D005995 ORTHO05D007362 1.2e-32 143.3 113 62.8
ECA248G1932 Erigeron canadensis HOM05D005995 ORTHO05D007362 1.2e-32 143.3 113 64.6
Potri.009G074400 Populus trichocarpa HOM05D005995 ORTHO05D007362 1.2e-32 143.3 113 64.6
Cfa011735 Carpinus fangiana HOM05D005995 ORTHO05D007362 1.6e-32 142.9 113 61.9
Rhsim13G0066700 Rhododendron simsii HOM05D005995 ORTHO05D007362 1.6e-32 142.9 105 66.7
ATR0681G053 Amborella trichopoda HOM05D005995 ORTHO05D007362 2.1e-32 142.5 113 62.8
Ciclev10029374m.g Citrus clementina HOM05D005995 ORTHO05D007362 2.8e-32 142.1 113 62.8
Phvul.006G070800 Phaseolus vulgaris HOM05D005995 ORTHO05D007362 2.8e-32 142.1 113 61.1
PSO017G3188 Papaver somniferum HOM05D005995 ORTHO05D007362 3.6e-32 141.7 117 59.8
Medtr3g465040 Medicago truncatula HOM05D005995 ORTHO05D007362 4.7e-32 141.4 113 61.9
Oeu031050.1 Olea europaea HOM05D005995 ORTHO05D007362 4.7e-32 141.4 117 59.0
Lalb_Chr20g0114841 Lupinus albus HOM05D005995 ORTHO05D007362 8.1e-32 140.6 113 60.2
Solyc06g082160.4 Solanum lycopersicum HOM05D005995 ORTHO05D007362 8.1e-32 140.6 117 60.7
Nn2g14523 Nelumbo nucifera HOM05D005995 ORTHO05D007362 1.1e-31 140.2 113 59.3
PSO170G4292 Papaver somniferum HOM05D005995 ORTHO05D007362 1.1e-31 140.2 117 59.0
Lalb_Chr18g0051191 Lupinus albus HOM05D005995 ORTHO05D007362 1.4e-31 139.8 113 61.1
CSS0037016 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 1.8e-31 139.4 111 61.3
CSS0047754 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 1.8e-31 139.4 111 61.3
Sc06g0010410 Simmondsia chinensis HOM05D005995 ORTHO05D007362 1.8e-31 139.4 113 62.8
Thecc.09G353200 Theobroma cacao HOM05D005995 ORTHO05D007362 1.8e-31 139.4 113 63.7
TAR131G0002 Trochodendron aralioides HOM05D005995 ORTHO05D007362 2.4e-31 139.0 115 60.0
GSVIVG01024692001 Vitis vinifera HOM05D005995 ORTHO05D007362 2.4e-31 139.0 113 62.8
Eucgr.B02232 Eucalyptus grandis HOM05D005995 ORTHO05D007362 3.1e-31 138.7 113 60.2
CAN.G1095.10 Capsicum annuum HOM05D005995 ORTHO05D007362 4.0e-31 138.3 117 58.1
QL01p039263 Quercus lobata HOM05D005995 ORTHO05D007362 4.0e-31 138.3 113 63.7
TAR623G0738 Trochodendron aralioides HOM05D005995 ORTHO05D007362 4.0e-31 138.3 115 60.0
AUR62023851 Chenopodium quinoa HOM05D005995 ORTHO05D007362 5.2e-31 137.9 115 60.0
Ca_14969_v3 Cicer arietinum L. HOM05D005995 ORTHO05D007362 5.2e-31 137.9 113 59.3
Lj6g0019722 Lotus japonicus HOM05D005995 ORTHO05D007362 5.2e-31 137.9 105 63.8
Duzib170G0863 Durio zibethinus HOM05D005995 ORTHO05D007362 6.8e-31 137.5 113 61.9
PGR031G2980 Punica granatum HOM05D005995 ORTHO05D007362 6.8e-31 137.5 111 58.6
COL.COLO4_11080 Corchorus olitorius HOM05D005995 ORTHO05D007362 8.9e-31 137.1 113 62.8
Prupe.6G053100 Prunus persica HOM05D005995 ORTHO05D007362 8.9e-31 137.1 118 58.5
HanXRQChr11g0334701 Helianthus annuus HOM05D005995 ORTHO05D007362 1.2e-30 136.7 118 61.0
vmacro02942 Vaccinium macrocarpon HOM05D005995 ORTHO05D007362 1.2e-30 136.7 105 64.8
FAN25G2223 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.5e-30 136.3 117 56.4
Lj1P130T21 Lonicera japonica HOM05D005995 ORTHO05D007362 1.5e-30 136.3 106 63.2
DCAR_015647 Daucus carota HOM05D005995 ORTHO05D007362 2.0e-30 136.0 113 60.2
FvH4_3g39150 Fragaria vesca HOM05D005995 ORTHO05D007362 2.0e-30 136.0 117 55.6
FAN11G1452 Fragaria x ananassa HOM05D005995 ORTHO05D007362 2.0e-30 136.0 117 55.6
MD11G1066600 Malus domestica HOM05D005995 ORTHO05D007362 2.0e-30 136.0 111 61.3
EL10Ac3g05994 Beta vulgaris HOM05D005995 ORTHO05D007362 2.6e-30 135.6 115 57.4
FAN16G3099 Fragaria x ananassa HOM05D005995 ORTHO05D007362 2.6e-30 135.6 115 56.5
FAN21G0787 Fragaria x ananassa HOM05D005995 ORTHO05D007362 2.6e-30 135.6 117 54.7
MBI03_g03955_MAGBIO Magnolia biondii HOM05D005995 ORTHO05D007362 2.6e-30 135.6 94 69.1
Nitab4.5_0002043g0030 Nicotiana tabacum HOM05D005995 ORTHO05D007362 3.4e-30 135.2 117 58.1
Psat0s2070g0120 Pisum sativum HOM05D005995 ORTHO05D007362 3.4e-30 135.2 113 57.5
RcHm_v2.0_Chr5g0070551 Rosa chinensis HOM05D005995 ORTHO05D007362 3.4e-30 135.2 117 54.7
Hund06617 Selenicereus undatus HOM05D005995 ORTHO05D007362 3.4e-30 135.2 117 56.4
MSTRG.10034 Avicennia marina HOM05D005995 ORTHO05D007362 4.4e-30 134.8 113 59.3
CiPaw.13G073700 Carya illinoinensis HOM05D005995 ORTHO05D007362 4.4e-30 134.8 109 59.6
Nitab4.5_0013485g0010 Nicotiana tabacum HOM05D005995 ORTHO05D007362 5.8e-30 134.4 117 57.3
arahy.Tifrunner.gnm1.ann1.6174C5 Arachis hypogaea HOM05D005995 ORTHO05D007362 7.6e-30 134.0 105 62.9
Glyma.18G060000 Glycine max HOM05D005995 ORTHO05D007362 3.8e-29 131.7 102 61.8
Sabra09G0056500 Salix brachista HOM05D005995 ORTHO05D007362 3.8e-29 131.7 113 59.3
Migut.N00147 Erythranthe guttata HOM05D005995 ORTHO05D007362 6.4e-29 131.0 112 54.5
Lsat_1_v5_gn_5_173181 Lactuca sativa HOM05D005995 ORTHO05D007362 8.4e-29 130.6 109 58.7
MD03G1063100 Malus domestica HOM05D005995 ORTHO05D007362 8.4e-29 130.6 113 59.3
Duzib168G2258 Durio zibethinus HOM05D005995 ORTHO05D007362 1.4e-28 129.8 97 66.0
TPR.G32896 Trifolium pratense HOM05D005995 ORTHO05D007362 1.9e-28 129.4 114 58.8
Gohir.D13G239100 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.4e-28 129.0 111 56.8
Gorai.013G270000 Gossypium raimondii HOM05D005995 ORTHO05D007362 2.4e-28 129.0 111 56.8
TAR633G2447 Trochodendron aralioides HOM05D005995 ORTHO05D007362 5.4e-28 127.9 113 54.9
BcaC01g06639 Brassica carinata HOM05D005995 ORTHO05D007362 7.1e-28 127.5 100 71.0
MD11G1152800 Malus domestica HOM05D005995 ORTHO05D007362 2.3e-26 122.5 99 60.6
SGA_v2.0_scaffold371G50155 Striga asiatica HOM05D005995 ORTHO05D007362 3.0e-26 122.1 105 56.2
Sed0015986 Sechium edule HOM05D005995 ORTHO05D007362 6.6e-26 120.9 97 61.9
unitig_62.g23487 Utricularia gibba HOM05D005995 ORTHO05D007362 1.5e-25 119.8 107 57.0
TWI79G0924 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 3.3e-25 118.6 116 56.9
CDE10G1344 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 4.3e-25 118.2 114 51.8
ClCG03G000500 Citrullus lanatus HOM05D005995 ORTHO05D007362 7.3e-25 117.5 113 54.0
MELO3C020526.2 Cucumis melo HOM05D005995 ORTHO05D007362 7.3e-25 117.5 113 54.0
CsaV3_1G036430 Cucumis sativus L. HOM05D005995 ORTHO05D007362 9.6e-25 117.1 113 53.1
TWI31G1135 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 9.6e-25 117.1 114 56.1
HPP92_012020 Vanilla planifolia HOM05D005995 ORTHO05D007362 2.1e-24 115.9 100 61.0
Peaxi162Scf00540g00015 Petunia axillaris HOM05D005995 ORTHO05D007362 4.8e-24 114.8 117 51.3
SEGI_16655 Sequoiadendron giganteum HOM05D005995 ORTHO05D007362 7.6e-22 107.5 122 49.2
MD11G1066800 Malus domestica HOM05D005995 ORTHO05D007362 1.7e-21 106.3 99 50.5
CDE10G0962 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 2.9e-21 105.5 104 51.9
HPP92_013780 Vanilla planifolia HOM05D005995 ORTHO05D007362 1.2e-19 100.1 78 62.8
Mapoly0008s0254 Marchantia polymorpha HOM05D005995 ORTHO05D007362 3.3e-17 92.0 115 45.2
Actinidia32626 Actinidia chinensis HOM05D005995 ORTHO05D007362 2.1e-16 89.4 65 69.2
SMO358G0374 Selaginella moellendorffii HOM05D005995 ORTHO05D007362 2.6e-14 82.4 99 46.5
AagrBONN_evm.TU.Sc2ySwM_344.2127 Anthoceros agrestis HOM05D005995 ORTHO05D007362 5.8e-14 81.3 104 41.3
Pp3c7_14690 Physcomitrium patens HOM05D005995 ORTHO05D007362 5.8e-14 81.3 102 46.1
Zm00001eb286290 Zea mays HOM05D005995 ORTHO05D007362 1.7e-13 79.7 119 40.3
MD11G1153100 Malus domestica HOM05D005995 ORTHO05D007362 4.9e-13 78.2 61 62.3
Os05g0351500 Oryza sativa ssp. japonica HOM05D005995 ORTHO05D007362 3.2e-12 75.5 119 37.0
AUR62002337 Chenopodium quinoa HOM05D005995 ORTHO05D007362 4.2e-12 75.1 64 56.2
Sed0014404 Sechium edule HOM05D005995 ORTHO05D007362 2.3e-10 69.3 61 59.0
Pp3c11_11530 Physcomitrium patens HOM05D001687 ORTHO05D001608 2.5e-09 65.9 91 40.7
Gohir.D05G107900 Gossypium hirsutum HOM05D005995 ORTHO05D007362 9.6e-09 63.9 105 38.1
Gorai.009G112000 Gossypium raimondii HOM05D005995 ORTHO05D007362 9.6e-09 63.9 105 38.1
Gohir.A05G107700 Gossypium hirsutum HOM05D005995 ORTHO05D007362 4.8e-08 61.6 89 41.6
CBR_g49952 Chara braunii HOM05D000019 ORTHO05D000002 5.3e-07 58.2 138 32.6
Medtr6g460490 Medicago truncatula HOM05D005995 ORTHO05D007362 5.8e-06 54.7 36 69.4


User provided reference genes

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