Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 5.7e-132 474.2 226 100.0
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 1.3e-128 463.0 226 97.3
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 5.4e-122 441.0 226 92.5
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 1.3e-120 436.4 226 91.6
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 2.3e-120 435.6 226 91.6
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 1.5e-111 406.4 224 85.3
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.3e-107 393.3 222 80.2
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 2.9e-107 392.1 222 80.2
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.1e-106 390.2 222 79.7
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 1.2e-105 386.7 226 81.0
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 1.3e-104 383.3 222 79.3
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 1.5e-103 379.8 224 79.5
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 2.5e-103 379.0 222 79.3
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 5.6e-103 377.9 222 77.9
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 1.4e-101 373.2 226 78.8
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 3.9e-96 355.1 222 74.8
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 4.3e-87 325.1 218 67.4
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 4.4e-84 315.1 224 67.4
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 9.3e-74 280.8 170 74.7
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 9.3e-74 280.8 170 74.7
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 4.6e-73 278.5 230 57.8
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.3e-72 276.9 228 57.9
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 3.0e-72 275.8 222 59.9
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 2.5e-71 272.7 222 59.5
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 1.3e-70 270.4 229 56.3
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 2.1e-70 269.6 222 55.4
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 3.6e-70 268.9 228 55.7
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 6.2e-70 268.1 222 54.5
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 1.1e-69 267.3 230 55.2
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.8e-69 266.5 225 56.9
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 2.4e-69 266.2 229 55.9
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 5.3e-69 265.0 229 55.5
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 9.0e-69 264.2 214 56.5
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.2e-68 263.8 229 55.0
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.5e-68 263.5 229 54.6
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 2.0e-68 263.1 229 54.6
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 2.0e-68 263.1 225 56.0
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 4.5e-68 261.9 225 55.6
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 4.5e-68 261.9 224 55.8
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 4.5e-68 261.9 226 56.2
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 7.6e-68 261.2 220 55.9
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 7.6e-68 261.2 227 56.8
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 7.6e-68 261.2 228 54.8
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 1.3e-67 260.4 215 55.8
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 1.7e-67 260.0 230 55.2
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 3.8e-67 258.8 225 55.1
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 4.9e-67 258.5 228 54.8
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 4.9e-67 258.5 225 55.1
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.4e-67 258.1 224 54.0
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 1.1e-66 257.3 228 53.1
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 1.9e-66 256.5 223 56.5
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 3.2e-66 255.8 229 54.6
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 3.2e-66 255.8 225 54.7
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 4.2e-66 255.4 228 53.1
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 5.5e-66 255.0 229 54.6
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 7.1e-66 254.6 223 52.9
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 2.1e-65 253.1 228 54.8
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 2.7e-65 252.7 223 52.0
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 3.5e-65 252.3 200 56.5
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.6e-65 251.9 224 53.1
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 4.6e-65 251.9 225 54.2
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 7.9e-65 251.1 227 53.7
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 1.0e-64 250.8 230 53.0
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.3e-64 250.4 222 55.4
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 1.3e-64 250.4 229 56.3
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.8e-64 250.0 225 51.6
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.9e-64 248.8 223 53.8
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 5.1e-64 248.4 228 53.1
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 8.7e-64 247.7 226 53.5
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 1.1e-63 247.3 222 53.2
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 1.5e-63 246.9 215 51.6
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 1.9e-63 246.5 230 51.7
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 1.9e-63 246.5 228 53.9
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 3.3e-63 245.7 228 52.2
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 3.3e-63 245.7 190 58.4
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 5.6e-63 245.0 224 52.7
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 1.6e-62 243.4 226 51.3
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 2.1e-62 243.0 223 53.4
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 2.8e-62 242.7 223 52.9
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.8e-62 242.7 231 55.0
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 3.7e-62 242.3 231 54.5
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.8e-62 241.9 230 52.6
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 8.1e-62 241.1 231 55.0
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.1e-61 240.7 198 56.1
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 1.1e-61 240.7 228 51.8
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 1.8e-61 240.0 218 53.7
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 1.8e-61 240.0 226 50.4
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.0e-61 238.8 231 54.1
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 6.9e-61 238.0 228 54.4
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 1.5e-60 236.9 225 51.6
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 2.0e-60 236.5 218 46.8
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.4e-58 230.3 225 51.6
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.2e-58 228.8 227 51.5
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 2.1e-57 226.5 226 50.0
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 2.7e-57 226.1 228 52.2
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.8e-54 216.1 184 57.1
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 1.4e-53 213.8 224 46.4
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 3.2e-50 202.6 219 44.7
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 5.5e-50 201.8 252 41.7
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.3e-48 197.2 219 47.9
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 6.7e-48 194.9 221 46.2
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 1.1e-47 194.1 227 48.0
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 4.5e-44 182.2 238 39.9
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.9e-43 179.5 252 36.9
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 6.5e-43 178.3 239 41.0
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 6.5e-43 178.3 247 36.4
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.1e-42 177.6 240 41.2
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 9.4e-42 174.5 232 38.4
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.2e-41 174.1 252 36.9
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 6.1e-41 171.8 233 37.3
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.9e-40 169.1 225 40.9
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 1.1e-39 167.5 137 59.1
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 2.0e-39 166.8 185 41.6
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.0e-39 166.8 226 41.6
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.3e-39 166.0 203 41.9
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 3.3e-39 166.0 228 39.9
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 7.4e-39 164.9 268 34.3
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 9.7e-39 164.5 230 37.0
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 1.2e-36 157.5 227 35.2
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 1.5e-36 157.1 230 35.7
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.5e-36 157.1 226 36.7
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 2.0e-36 156.8 146 46.6
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 3.4e-36 156.0 182 41.8
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 5.0e-35 152.1 233 36.5
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 6.5e-35 151.8 215 38.6
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 8.5e-35 151.4 265 32.8
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 1.4e-34 150.6 264 31.8
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 1.2e-33 147.5 222 37.4
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.1e-33 146.7 265 32.5
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 3.6e-33 146.0 231 35.5
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 2.3e-32 143.3 190 38.4
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.7e-32 141.7 256 32.8
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 4.4e-31 139.0 151 43.7
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 1.7e-30 137.1 226 31.9
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 4.8e-30 135.6 155 42.6
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 4.8e-30 135.6 211 36.0
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 6.3e-30 135.2 139 46.0
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 1.4e-29 134.0 150 44.7
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 7.0e-29 131.7 195 35.9
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 9.1e-29 131.3 226 36.3
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.6e-28 130.6 215 38.1
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 1.6e-28 130.6 138 44.2
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 2.0e-28 130.2 254 31.1
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.3e-27 127.5 226 35.8
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 5.0e-27 125.6 143 43.4
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 6.5e-27 125.2 315 27.6
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.1e-25 120.2 139 45.3
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.4e-24 117.5 139 43.9
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 2.6e-23 113.2 110 41.8
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 1.7e-22 110.5 102 48.0
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.1e-21 107.8 211 29.9
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 1.4e-21 107.5 142 38.7
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 4.1e-21 105.9 143 40.6
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 5.3e-21 105.5 142 39.4
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 1.9e-18 97.1 190 35.8
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 5.5e-18 95.5 151 34.4
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.6e-17 94.0 109 40.4
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.4e-15 86.3 215 30.2
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.1e-13 81.3 77 42.9
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.9e-10 70.5 98 33.7
Cfa026731 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.6e-09 67.4 112 35.7
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 2.3e-08 63.5 203 28.1
Pp3c25_3200 Physcomitrium patens HOM05D001292 ORTHO05D001202 6.8e-08 62.0 215 25.1
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.0e-07 60.5 92 40.2
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 2.0e-07 60.5 51 47.1
unitig_8.g4849 Utricularia gibba HOM05D001292 ORTHO05D001202 2.2e-06 57.0 184 23.4
SGA_v2.0_scaffold48G17832 Striga asiatica HOM05D001292 ORTHO05D001202 2.8e-06 56.6 219 22.8
TWI59G0076 Tripterygium wilfordii HOM05D001292 ORTHO05D001202 8.3e-06 55.1 258 22.9


User provided reference genes

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