Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p09290 Brassica napus HOM05D002762 ORTHO05D008831 0.0e+00 1217.2 614 100.0
BolC3t13425H Brassica oleracea HOM05D002762 ORTHO05D008831 0.0e+00 1209.1 614 99.5
A03p08030 Brassica napus HOM05D002762 ORTHO05D008831 0.0e+00 1177.5 616 96.3
BraA03t10129Z Brassica rapa HOM05D002762 ORTHO05D008831 0.0e+00 1177.5 616 96.3
Sp6g27240 Schrenkiella parvula HOM05D002762 ORTHO05D008831 0.0e+00 1085.5 625 89.1
AL3G53900 Arabidopsis lyrata HOM05D002762 ORTHO05D008831 1.3e-303 1045.8 617 85.1
AT2G20790 Arabidopsis thaliana HOM05D002762 ORTHO05D008831 1.6e-301 1038.9 618 84.8
Thhalv10003762m.g Eutrema salsugineum HOM05D002762 ORTHO05D008831 1.9e-299 1031.9 618 84.5
CARHR111460 Cardamine hirsuta HOM05D002762 ORTHO05D008831 9.9e-296 1019.6 621 83.3
THA.LOC104802606 Tarenaya hassleriana HOM05D002762 ORTHO05D008831 4.2e-286 987.6 617 78.8
Aa31LG8G17700 Aethionema arabicum HOM05D002762 ORTHO05D008831 1.3e-282 976.1 626 78.9
Carub.0003s3536 Capsella rubella HOM05D002762 ORTHO05D008831 6.5e-271 937.2 557 85.1
TWI53G0007 Tripterygium wilfordii HOM05D002762 ORTHO05D008831 8.5e-247 857.1 633 68.1
Ciclev10004552m.g Citrus clementina HOM05D002762 ORTHO05D008831 1.1e-246 856.7 627 68.1
GSVIVG01017858001 Vitis vinifera HOM05D002762 ORTHO05D008831 3.2e-246 855.1 630 67.0
TAR365G0003 Trochodendron aralioides HOM05D002762 ORTHO05D008831 2.7e-245 852.0 631 66.6
Thecc.04G271400 Theobroma cacao HOM05D002762 ORTHO05D008831 4.7e-245 851.3 633 67.5
CSS0041967 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D008831 8.0e-245 850.5 631 66.6
Rhsim04G0212200 Rhododendron simsii HOM05D002762 ORTHO05D008831 2.3e-244 849.0 627 66.2
Actinidia40215 Actinidia chinensis HOM05D002762 ORTHO05D008831 8.8e-244 847.0 622 66.4
QL06p006121 Quercus lobata HOM05D002762 ORTHO05D008831 5.7e-243 844.3 630 66.2
Gohir.A09G231700 Gossypium hirsutum HOM05D002762 ORTHO05D008831 7.0e-241 837.4 631 66.1
Gorai.006G255700 Gossypium raimondii HOM05D002762 ORTHO05D008831 2.0e-240 835.9 631 66.1
VMungo1215G1507 Vigna mungo HOM05D002762 ORTHO05D008831 5.9e-240 834.3 624 64.4
ClCG06G005650 Citrullus lanatus HOM05D002762 ORTHO05D008831 1.7e-239 832.8 631 64.7
Gohir.D09G232800 Gossypium hirsutum HOM05D002762 ORTHO05D008831 1.7e-239 832.8 631 65.9
Phvul.003G097700 Phaseolus vulgaris HOM05D002762 ORTHO05D008831 3.8e-239 831.6 625 64.6
Duzib212G0752 Durio zibethinus HOM05D002762 ORTHO05D008831 5.5e-238 827.8 634 65.5
CsaV3_6G005500 Cucumis sativus L. HOM05D002762 ORTHO05D008831 6.1e-237 824.3 631 64.5
CANSAT78G1603 Cannabis sativa HOM05D002762 ORTHO05D008831 4.0e-236 821.6 636 64.0
Duzib052G0147 Durio zibethinus HOM05D002762 ORTHO05D008831 4.0e-236 821.6 631 65.0
Potri.010G028600 Populus trichocarpa HOM05D002762 ORTHO05D008831 4.0e-236 821.6 637 65.0
Haze_01004 Corylus avellana HOM05D002762 ORTHO05D008831 5.2e-236 821.2 677 61.3
Sopen01g032170 Solanum pennellii HOM05D002762 ORTHO05D008831 6.8e-236 820.8 628 63.5
Lj4g0021299 Lotus japonicus HOM05D002762 ORTHO05D008831 1.5e-235 819.7 623 64.5
CAN.G889.17 Capsicum annuum HOM05D002762 ORTHO05D008831 2.0e-235 819.3 629 63.3
Solyc01g080360.3 Solanum lycopersicum HOM05D002762 ORTHO05D008831 2.0e-235 819.3 628 63.5
FvH4_4g14000 Fragaria vesca HOM05D002762 ORTHO05D008831 5.7e-235 817.8 633 64.8
Glyma.17G019900 Glycine max HOM05D002762 ORTHO05D008831 3.7e-234 815.1 627 64.0
Lalb_Chr07g0177471 Lupinus albus HOM05D002762 ORTHO05D008831 6.3e-234 814.3 624 64.4
MD16G1180200 Malus domestica HOM05D002762 ORTHO05D008831 1.4e-233 813.1 634 64.4
FAN12G0174 Fragaria x ananassa HOM05D002762 ORTHO05D008831 3.1e-233 812.0 633 64.3
ATR0626G043 Amborella trichopoda HOM05D002762 ORTHO05D008831 5.4e-233 811.2 637 63.1
Ca_21567_v3 Cicer arietinum L. HOM05D002762 ORTHO05D008831 5.4e-233 811.2 624 65.1
RcHm_v2.0_Chr4g0419641 Rosa chinensis HOM05D002762 ORTHO05D008831 5.4e-233 811.2 632 64.2
vmacro08246 Vaccinium macrocarpon HOM05D002762 ORTHO05D008831 7.0e-233 810.8 650 63.5
COL.COLO4_13977 Corchorus olitorius HOM05D002762 ORTHO05D008831 1.6e-232 809.7 631 65.6
FAN22G0551 Fragaria x ananassa HOM05D002762 ORTHO05D008831 2.0e-232 809.3 633 64.1
CSS0031724 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D008831 3.5e-232 808.5 610 66.2
MBI19_g15847_MAGBIO Magnolia biondii HOM05D002762 ORTHO05D008831 1.3e-231 806.6 631 63.2
Psat4g031200 Pisum sativum HOM05D002762 ORTHO05D008831 1.3e-231 806.6 626 63.6
FAN07G1246 Fragaria x ananassa HOM05D002762 ORTHO05D008831 3.8e-231 805.1 632 64.1
Medtr4g118010 Medicago truncatula HOM05D002762 ORTHO05D008831 3.8e-231 805.1 627 63.6
Cc03_g02810 Coffea canephora HOM05D002762 ORTHO05D008831 8.6e-231 803.9 628 62.7
TPR.G28123 Trifolium pratense HOM05D002762 ORTHO05D008831 2.5e-230 802.4 623 63.7
arahy.Tifrunner.gnm1.ann1.08LYWQ Arachis hypogaea HOM05D002762 ORTHO05D008831 3.3e-230 802.0 623 62.4
Manes.03G187600 Manihot esculenta HOM05D002762 ORTHO05D008831 2.1e-229 799.3 614 65.3
MSTRG.3975 Avicennia marina HOM05D002762 ORTHO05D008831 4.7e-229 798.1 625 62.9
DCAR_030580 Daucus carota HOM05D002762 ORTHO05D008831 4.7e-229 798.1 624 62.7
SGA_v2.0_scaffold237G43848 Striga asiatica HOM05D002762 ORTHO05D008831 5.2e-228 794.7 617 63.5
Migut.G00243 Erythranthe guttata HOM05D002762 ORTHO05D008831 6.8e-228 794.3 625 61.9
Migut.G00245 Erythranthe guttata HOM05D002762 ORTHO05D008831 2.0e-227 792.7 625 61.6
AUR62033230 Chenopodium quinoa HOM05D002762 ORTHO05D008831 2.2e-226 789.3 630 61.9
Hund09035 Selenicereus undatus HOM05D002762 ORTHO05D008831 2.8e-226 788.9 630 62.7
EL10Ac8g18297 Beta vulgaris HOM05D002762 ORTHO05D008831 1.1e-225 786.9 632 61.7
HanXRQChr07g0192681 Helianthus annuus HOM05D002762 ORTHO05D008831 2.4e-225 785.8 628 63.5
Sabra10G0012300 Salix brachista HOM05D002762 ORTHO05D008831 4.1e-225 785.0 648 61.6
Nitab4.5_0000894g0020 Nicotiana tabacum HOM05D002762 ORTHO05D008831 9.2e-225 783.9 610 62.6
Sed0011257 Sechium edule HOM05D002762 ORTHO05D008831 9.2e-225 783.9 631 63.2
Eucgr.F00974 Eucalyptus grandis HOM05D002762 ORTHO05D008831 1.2e-224 783.5 601 64.9
Sc19g0004720 Simmondsia chinensis HOM05D002762 ORTHO05D008831 7.8e-224 780.8 634 61.4
Aqoxy5G00558 Aquilegia oxysepala HOM05D002762 ORTHO05D008831 2.3e-223 779.2 624 61.9
PSO210G2175 Papaver somniferum HOM05D002762 ORTHO05D008831 5.0e-223 778.1 628 60.4
Nn4g26133 Nelumbo nucifera HOM05D002762 ORTHO05D008831 1.9e-222 776.2 613 62.5
Lj6A665G69 Lonicera japonica HOM05D002762 ORTHO05D008831 2.5e-222 775.8 664 59.9
Lsat_1_v5_gn_6_14820 Lactuca sativa HOM05D002762 ORTHO05D008831 3.6e-221 771.9 626 62.6
HPP92_018399 Vanilla planifolia HOM05D002762 ORTHO05D008831 4.7e-221 771.5 634 61.4
Oeu035631.1 Olea europaea HOM05D002762 ORTHO05D008831 6.1e-221 771.2 595 64.2
PSO832G0886 Papaver somniferum HOM05D002762 ORTHO05D008831 1.4e-220 770.0 628 59.9
arahy.Tifrunner.gnm1.ann1.ZAIR7G Arachis hypogaea HOM05D002762 ORTHO05D008831 6.8e-220 767.7 613 61.3
CiPaw.01G157200 Carya illinoinensis HOM05D002762 ORTHO05D008831 8.9e-220 767.3 579 65.5
Peaxi162Scf00095g00610 Petunia axillaris HOM05D002762 ORTHO05D008831 2.0e-216 756.1 589 64.0
ECA233G1162 Erigeron canadensis HOM05D002762 ORTHO05D008831 2.8e-213 745.7 621 60.7
Sed0022901 Sechium edule HOM05D002762 ORTHO05D008831 6.8e-212 741.1 631 60.7
Nitab4.5_0000059g0110 Nicotiana tabacum HOM05D002762 ORTHO05D008831 2.2e-210 736.1 575 62.3
AUR62021313 Chenopodium quinoa HOM05D002762 ORTHO05D008831 8.3e-210 734.2 595 61.3
CDE11G0719 Ceratophyllum demersum HOM05D002762 ORTHO05D008831 2.3e-207 726.1 629 58.7
Zm00001eb410820 Zea mays HOM05D002762 ORTHO05D008831 5.2e-204 714.9 628 56.5
Prupe.1G147800 Prunus persica HOM05D002762 ORTHO05D008831 1.9e-190 669.8 630 54.3
unitig_899.g14405 Utricularia gibba HOM05D002762 ORTHO05D008831 3.1e-188 662.5 596 56.2
MELO3C021387.2 Cucumis melo HOM05D002762 ORTHO05D008831 3.4e-179 632.5 449 69.0
Dinv38356 Davidia involucrata HOM05D002762 ORTHO05D008831 1.1e-169 600.9 446 66.1
SMO115G0172 Selaginella moellendorffii HOM05D002762 ORTHO05D008831 1.1e-169 600.9 624 51.3
Ah.09g229990 Amaranthus hybridus HOM05D002762 ORTHO05D008831 2.1e-165 586.6 446 64.6
SEGI_30175 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 3.8e-162 575.9 491 59.5
Mapoly0055s0097 Marchantia polymorpha HOM05D002762 ORTHO05D008831 1.4e-161 573.9 642 48.1
Nn1g08335 Nelumbo nucifera HOM05D002762 ORTHO05D008831 2.0e-155 553.5 416 64.2
AagrBONN_evm.TU.Sc2ySwM_368.1411 Anthoceros agrestis HOM05D002762 ORTHO05D008831 4.4e-142 509.2 605 45.0
Cfa015544 Carpinus fangiana HOM05D002762 ORTHO05D008831 4.8e-141 505.8 404 63.1
Pp3c2_12250 Physcomitrium patens HOM05D002762 ORTHO05D008831 7.7e-139 498.4 623 43.8
SEGI_25743 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 1.8e-135 487.3 399 60.7
Eucgr.B01191 Eucalyptus grandis HOM05D002762 ORTHO05D008831 8.2e-133 478.4 417 59.2
Cpa.g.sc16.61 Carica papaya HOM05D002762 ORTHO05D008831 2.8e-104 383.6 608 39.0
MD13G1179200 Malus domestica HOM05D002762 ORTHO05D008831 3.1e-103 380.2 418 51.9
CBR_g19730 Chara braunii HOM05D002762 ORTHO05D008831 5.2e-103 379.4 769 32.5
BcaB01g05249 Brassica carinata HOM05D002762 ORTHO05D008831 1.9e-92 344.4 174 98.3
Actinidia23461 Actinidia chinensis HOM05D002762 ORTHO05D008831 1.4e-87 328.2 272 63.2
Os12g0528300 Oryza sativa ssp. japonica HOM05D002762 ORTHO05D008831 2.3e-42 177.9 172 51.2
SEGI_28752 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 1.9e-36 158.3 148 52.0
MD12G1098800 Malus domestica HOM05D002762 ORTHO05D008831 2.7e-35 154.5 209 41.6
MD12G1098700 Malus domestica HOM05D002762 ORTHO05D008831 8.8e-34 149.4 164 48.2
Actinidia23460 Actinidia chinensis HOM05D002762 ORTHO05D030920 6.1e-27 126.7 77 75.3
VMungo1215G0498 Vigna mungo HOM05D002762 ORTHO05D008831 2.5e-20 104.8 77 66.2
FAN17G1900 Fragaria x ananassa HOM05D002762 ORTHO05D030920 2.7e-14 84.7 83 55.4
COL.COLO4_28661 Corchorus olitorius HOM05D002762 ORTHO05D008831 2.9e-13 81.3 89 47.2
TWI09G1537 Tripterygium wilfordii HOM05D002762 ORTHO05D008831 7.5e-09 66.6 40 77.5
MD13G1179000 Malus domestica HOM05D002762 ORTHO05D030920 3.1e-07 61.2 35 74.3
Glyma.07G254400 Glycine max HOM05D002762 ORTHO05D004643 7.7e-06 56.6 45 57.8


User provided reference genes

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