Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 2511.9 1273 100.0
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 2498.8 1274 99.5
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 2434.8 1275 97.3
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 2431.4 1275 97.2
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 2259.6 1273 91.0
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 2247.2 1283 88.9
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 2215.7 1281 88.3
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 2215.3 1281 88.2
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 2214.5 1281 88.1
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 2201.4 1278 87.5
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 2180.6 1277 87.3
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 2177.9 1278 85.7
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 2171.0 1281 86.3
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 2064.3 1307 81.5
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 2061.2 1279 83.6
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1922.9 1296 74.8
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1590.5 1298 61.4
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1580.5 1300 62.2
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1564.3 1300 62.0
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1544.3 1299 61.0
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1543.5 1321 60.5
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1531.9 1294 61.0
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1520.4 1266 62.3
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1517.7 1294 60.4
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1513.8 1295 60.6
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1513.0 1300 60.4
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1505.0 1296 60.3
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1504.6 1295 60.3
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1499.6 1304 60.2
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1498.4 1293 59.4
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1498.0 1295 60.2
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1494.9 1287 60.8
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1491.5 1301 60.1
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1486.1 1292 59.6
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1481.5 1314 59.1
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1480.3 1288 59.5
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1478.8 1243 61.8
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1478.0 1291 59.5
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1478.0 1289 60.1
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1474.1 1356 56.9
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1472.2 1312 59.1
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1467.6 1297 59.8
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1464.5 1195 63.5
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1457.6 1294 59.0
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1454.5 1258 59.5
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1454.5 1293 57.4
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1454.5 1327 58.3
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1454.1 1309 57.4
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1453.0 1293 57.7
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1447.2 1298 57.4
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1446.4 1297 57.0
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1444.5 1295 57.1
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1442.6 1380 55.1
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1442.2 1293 57.8
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1439.9 1294 57.3
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1439.1 1297 56.9
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1439.1 1296 57.5
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1436.8 1297 57.1
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1435.2 1294 56.9
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1434.1 1308 56.4
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1434.1 1292 57.4
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1422.5 1296 56.9
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1417.1 1413 54.5
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1414.4 1296 56.6
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1409.4 1320 57.2
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1409.0 1298 56.2
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1402.5 1295 57.2
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1400.2 1299 56.7
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1399.4 1312 56.6
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1389.4 1294 56.2
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1389.0 1288 54.9
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1384.0 1357 53.8
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1368.2 1113 63.0
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1359.4 1298 55.4
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1340.9 1285 54.2
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1337.8 1297 55.1
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1333.9 1110 61.4
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1331.6 1286 54.4
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1320.4 1311 54.2
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1312.0 1302 54.0
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1303.5 1303 53.4
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1299.6 1093 60.9
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1298.1 1292 53.6
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1293.9 1291 52.3
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1292.7 1277 53.7
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1288.1 1405 51.3
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1288.1 1088 60.4
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1282.7 1284 52.8
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1274.6 1111 59.3
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1260.4 1164 56.6
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1229.2 1300 51.5
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1222.6 1206 53.9
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1215.3 1304 49.7
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1213.7 1327 49.7
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1208.4 1289 50.2
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 0.0e+00 1206.0 647 93.0
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1202.6 1285 50.7
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1202.2 1112 57.9
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1194.5 1080 56.9
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1194.5 1260 50.5
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1188.3 1151 56.1
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1148.7 1300 48.9
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1105.5 1387 46.4
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 2.0e-258 896.7 924 51.8
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 9.3e-256 887.9 1336 38.5
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 2.0e-245 853.6 1365 38.6
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 7.4e-245 851.7 845 53.5
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 2.5e-232 810.1 754 56.1
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 5.9e-226 788.9 1189 38.7
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 3.2e-187 660.2 920 42.3
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 2.9e-180 637.1 1288 33.6
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 1.2e-154 552.0 379 73.9
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 4.3e-152 543.5 570 51.1
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 5.7e-144 516.5 657 45.5
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 3.1e-134 484.2 505 54.9
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 5.3e-134 483.4 349 69.3
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 2.3e-121 441.4 462 50.9
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 1.1e-120 439.1 325 66.2
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 1.6e-101 375.6 1076 27.6
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 4.9e-95 354.0 222 71.6
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.7e-87 328.9 209 73.7
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 2.9e-87 328.2 214 73.4
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 1.7e-84 318.9 1051 25.9
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 4.4e-80 304.3 209 69.9
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 4.3e-75 287.7 475 38.7
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 9.5e-75 286.6 440 40.5
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 6.4e-63 247.3 158 69.6
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 1.2e-56 226.5 120 93.3
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.6e-56 225.3 189 54.5
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 4.4e-56 224.6 148 66.9
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 6.4e-55 220.7 292 43.2
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 7.8e-53 213.8 982 23.7
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 1.1e-51 209.9 746 25.9
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 3.1e-49 201.8 175 59.4
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 5.8e-40 171.0 125 62.4
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 4.9e-39 167.9 215 43.3
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.2e-37 163.3 122 60.7
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 9.6e-35 153.7 143 55.2
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.4e-33 149.8 209 41.6
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.5e-32 146.4 114 71.9
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 5.1e-28 131.3 375 31.7
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 1.9e-27 129.4 113 70.8
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 7.4e-27 127.5 146 49.3
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 7.4e-27 127.5 205 35.1
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 2.2e-26 125.9 94 67.0
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.2e-21 110.2 209 34.9
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 1.2e-21 110.2 144 44.4
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 8.2e-18 97.4 81 61.7
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.1e-17 97.1 88 54.5
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 3.1e-17 95.5 239 28.0
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 2.0e-16 92.8 112 47.3
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 2.2e-15 89.4 59 61.0
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 3.8e-15 88.6 83 59.0
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 1.8e-12 79.7 59 57.6
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 8.2e-10 70.9 87 44.8
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 1.4e-09 70.1 209 30.6
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 9.1e-09 67.4 76 64.5
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 2.2e-07 62.8 86 41.9
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 8.5e-07 60.8 45 62.2
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 3.2e-06 58.9 73 58.9
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 9.4e-06 57.4 41 56.1
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 9.4e-06 57.4 38 63.2


User provided reference genes

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