Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p06880 Brassica napus HOM05D006285 ORTHO05D007249 4.4e-104 381.3 196 100.0
BolC3t13190H Brassica oleracea HOM05D006285 ORTHO05D007249 2.2e-103 379.0 196 99.5
A03p05870 Brassica napus HOM05D006285 ORTHO05D007249 5.3e-102 374.4 196 98.5
BraA03t09926Z Brassica rapa HOM05D006285 ORTHO05D007249 5.3e-102 374.4 196 98.5
BolC2t06542H Brassica oleracea HOM05D006285 ORTHO05D007249 1.4e-78 296.6 197 79.2
A10p24990 Brassica napus HOM05D006285 ORTHO05D007249 2.4e-78 295.8 197 79.2
BraA10t44561Z Brassica rapa HOM05D006285 ORTHO05D007249 2.4e-78 295.8 197 79.2
BcaC04g19135 Brassica carinata HOM05D006285 ORTHO05D007249 2.7e-77 292.4 197 78.2
C02p05990 Brassica napus HOM05D006285 ORTHO05D007249 1.0e-76 290.4 197 78.2
C09p63860 Brassica napus HOM05D006285 ORTHO05D007249 3.9e-76 288.5 198 77.8
BolC9t59226H Brassica oleracea HOM05D006285 ORTHO05D007249 3.9e-76 288.5 195 78.5
Sp6g30770 Schrenkiella parvula HOM05D006285 ORTHO05D007249 7.3e-75 284.3 197 78.2
BraA02t05154Z Brassica rapa HOM05D006285 ORTHO05D007249 4.0e-73 278.5 184 79.3
A02p01780 Brassica napus HOM05D006285 ORTHO05D007249 6.8e-73 277.7 184 78.8
AL6G23830 Arabidopsis lyrata HOM05D006285 ORTHO05D007249 8.9e-73 277.3 199 75.4
BcaNung01870 Brassica carinata HOM05D006285 ORTHO05D007249 3.7e-71 271.9 184 78.3
BcaNung01871 Brassica carinata HOM05D006285 ORTHO05D007249 3.7e-71 271.9 184 78.3
BcaNung01167 Brassica carinata HOM05D006285 ORTHO05D007249 5.4e-70 268.1 183 77.6
Thhalv10014724m.g Eutrema salsugineum HOM05D006285 ORTHO05D007249 1.3e-68 263.5 185 78.4
AT5G13220 Arabidopsis thaliana HOM05D006285 ORTHO05D007249 1.3e-63 246.9 185 74.1
Carub.0006s1139 Capsella rubella HOM05D006285 ORTHO05D007249 1.3e-63 246.9 206 71.8
BcaB01g05368 Brassica carinata HOM05D006285 ORTHO05D007249 1.9e-54 216.5 196 63.8
THA.LOC104825472 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 2.0e-48 196.4 208 57.7
Aa31LG3G14440 Aethionema arabicum HOM05D006285 ORTHO05D007249 1.3e-47 193.7 180 62.2
THA.LOC104803190 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 1.6e-45 186.8 197 55.3
CARHR200230 Cardamine hirsuta HOM05D006285 ORTHO05D007249 2.4e-38 162.9 152 65.8
Thecc.02G195800 Theobroma cacao HOM05D006285 ORTHO05D007249 2.3e-36 156.4 198 47.0
QL03p050117 Quercus lobata HOM05D006285 ORTHO05D007249 5.1e-36 155.2 192 45.8
Potri.003G165000 Populus trichocarpa HOM05D006285 ORTHO05D007249 1.1e-35 154.1 199 49.2
CANSAT01G0254 Cannabis sativa HOM05D006285 ORTHO05D007249 1.5e-35 153.7 198 47.0
GSVIVG01000967001 Vitis vinifera HOM05D006285 ORTHO05D007249 1.5e-35 153.7 199 47.7
Gohir.D01G019500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 7.4e-35 151.4 195 50.8
Gorai.002G021800 Gossypium raimondii HOM05D006285 ORTHO05D007249 7.4e-35 151.4 195 50.8
Gorai.005G196200 Gossypium raimondii HOM05D006285 ORTHO05D007249 9.6e-35 151.0 199 47.2
CiPaw.05G103600 Carya illinoinensis HOM05D006285 ORTHO05D007249 4.8e-34 148.7 198 47.0
Cfa009427 Carpinus fangiana HOM05D006285 ORTHO05D007249 1.1e-33 147.5 193 46.1
PGR057G0008 Punica granatum HOM05D006285 ORTHO05D007249 1.4e-33 147.1 198 47.0
PGR119G0305 Punica granatum HOM05D006285 ORTHO05D007249 1.4e-33 147.1 198 47.0
CiPaw.06G107800 Carya illinoinensis HOM05D006285 ORTHO05D007249 3.1e-33 146.0 197 47.2
Gohir.D02G174500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 3.1e-33 146.0 199 46.2
Haze_12478 Corylus avellana HOM05D006285 ORTHO05D007249 5.3e-33 145.2 193 46.1
Gohir.A03G151500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 9.0e-33 144.4 199 45.7
Ciclev10032858m.g Citrus clementina HOM05D006285 ORTHO05D007249 1.2e-32 144.1 188 51.6
Sabra03G0120200 Salix brachista HOM05D006285 ORTHO05D007249 2.0e-32 143.3 216 44.4
TWI18G1468 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 5.8e-32 141.7 199 44.2
Oeu044502.1 Olea europaea HOM05D006285 ORTHO05D007249 9.9e-32 141.0 186 47.8
Duzib052G0121 Durio zibethinus HOM05D006285 ORTHO05D007249 1.3e-31 140.6 197 45.2
ClCG06G001800 Citrullus lanatus HOM05D006285 ORTHO05D007249 1.9e-30 136.7 197 47.2
Prupe.1G218500 Prunus persica HOM05D006285 ORTHO05D007249 2.5e-30 136.3 218 40.8
MSTRG.467 Avicennia marina HOM05D006285 ORTHO05D007249 7.1e-30 134.8 190 47.4
Manes.09G186200 Manihot esculenta HOM05D006285 ORTHO05D007249 7.1e-30 134.8 204 45.1
Actinidia09609 Actinidia chinensis HOM05D006285 ORTHO05D007249 9.3e-30 134.4 214 43.0
COL.COLO4_20246 Corchorus olitorius HOM05D006285 ORTHO05D007249 9.3e-30 134.4 194 47.4
Potri.001G062500 Populus trichocarpa HOM05D006285 ORTHO05D007249 1.2e-29 134.0 193 46.6
Actinidia34008 Actinidia chinensis HOM05D006285 ORTHO05D007249 3.5e-29 132.5 211 43.6
TAR622G0521 Trochodendron aralioides HOM05D006285 ORTHO05D007249 3.5e-29 132.5 201 42.3
Dinv19860 Davidia involucrata HOM05D006285 ORTHO05D007249 6.0e-29 131.7 202 43.6
MSTRG.8043 Avicennia marina HOM05D006285 ORTHO05D007249 1.0e-28 131.0 193 44.6
CSS0034430 Camellia sinensis var. sinensis HOM05D006285 ORTHO05D007249 1.3e-28 130.6 211 41.7
CsaV3_6G007840 Cucumis sativus L. HOM05D006285 ORTHO05D007249 1.8e-28 130.2 197 45.2
Duzib248G1203 Durio zibethinus HOM05D006285 ORTHO05D007249 1.8e-28 130.2 191 43.5
MD16G1127400 Malus domestica HOM05D006285 ORTHO05D007249 6.7e-28 128.3 211 44.1
EL10Ac6g13588 Beta vulgaris HOM05D006285 ORTHO05D007249 8.7e-28 127.9 195 43.6
Sed0027998 Sechium edule HOM05D006285 ORTHO05D007249 1.9e-27 126.7 194 43.8
PGR102G0288 Punica granatum HOM05D006285 ORTHO05D007249 2.5e-27 126.3 195 42.1
MD13G1127100 Malus domestica HOM05D006285 ORTHO05D007249 5.6e-27 125.2 207 42.0
Atru.chr11.2411 Acer truncatum HOM05D006285 ORTHO05D007249 1.3e-26 124.0 183 42.6
Actinidia22128 Actinidia chinensis HOM05D006285 ORTHO05D007249 1.6e-26 123.6 190 42.1
Actinidia30601 Actinidia chinensis HOM05D006285 ORTHO05D007249 2.8e-26 122.9 192 42.7
MELO3C022348.2 Cucumis melo HOM05D006285 ORTHO05D007249 8.2e-26 121.3 187 44.4
Sabra01G0044900 Salix brachista HOM05D006285 ORTHO05D007249 8.2e-26 121.3 195 43.6
Peaxi162Scf00128g00175 Petunia axillaris HOM05D006285 ORTHO05D007249 1.8e-25 120.2 191 40.8
TAR374G0139 Trochodendron aralioides HOM05D006285 ORTHO05D007249 1.5e-24 117.1 202 40.6
Rhsim12G0098900 Rhododendron simsii HOM05D006285 ORTHO05D007249 2.6e-24 116.3 191 42.4
Manes.08G102800 Manihot esculenta HOM05D006285 ORTHO05D007249 7.6e-24 114.8 139 49.6
Cpa.g.sc207.10 Carica papaya HOM05D006285 ORTHO05D007249 1.7e-23 113.6 174 44.8
Aqoxy5G03206 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 5.5e-22 108.6 186 39.8
CDE06G1494 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 5.5e-22 108.6 192 37.0
Gohir.A01G021000 Gossypium hirsutum HOM05D006285 ORTHO05D007249 7.1e-22 108.2 145 49.7
CsaV3_4G002460 Cucumis sativus L. HOM05D006285 ORTHO05D007249 2.1e-21 106.7 198 39.9
Oeu019430.1 Olea europaea HOM05D006285 ORTHO05D007249 2.7e-21 106.3 141 46.8
Eucgr.G01954 Eucalyptus grandis HOM05D006285 ORTHO05D007249 6.0e-21 105.1 155 43.9
PGSC0003DMG400006480 Solanum tuberosum HOM05D006285 ORTHO05D007249 7.9e-21 104.8 185 38.9
ATR0582G164 Amborella trichopoda HOM05D006285 ORTHO05D007249 1.8e-20 103.6 203 36.9
Migut.K01038 Erythranthe guttata HOM05D006285 ORTHO05D007249 2.3e-20 103.2 178 42.1
HanXRQChr17g0540471 Helianthus annuus HOM05D006285 ORTHO05D007249 5.1e-20 102.1 184 35.9
MELO3C017797.2 Cucumis melo HOM05D006285 ORTHO05D007249 2.5e-19 99.8 195 37.4
TWI36G1029 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 3.7e-18 95.9 148 43.2
HanXRQChr06g0175041 Helianthus annuus HOM05D006285 ORTHO05D007249 4.8e-18 95.5 197 37.1
PSO017G1512 Papaver somniferum HOM05D006285 ORTHO05D007249 1.4e-17 94.0 217 34.6
ECA233G3183 Erigeron canadensis HOM05D006285 ORTHO05D007249 2.4e-17 93.2 161 37.9
Lsat_1_v5_gn_3_31461 Lactuca sativa HOM05D006285 ORTHO05D007249 3.1e-17 92.8 178 40.4
PSO732G0051 Papaver somniferum HOM05D006285 ORTHO05D007249 5.3e-17 92.0 198 34.3
PSO478G0022 Papaver somniferum HOM05D006285 ORTHO05D007249 1.2e-16 90.9 218 33.5
Eucgr.B03545 Eucalyptus grandis HOM05D006285 ORTHO05D007249 7.7e-16 88.2 209 36.4
PSO675G2785 Papaver somniferum HOM05D006285 ORTHO05D007249 1.3e-15 87.4 202 32.2
Nn4g22189 Nelumbo nucifera HOM05D006285 ORTHO05D007249 1.7e-15 87.0 138 42.8
HanXRQChr08g0210081 Helianthus annuus HOM05D006285 ORTHO05D007249 2.2e-15 86.7 165 39.4
Ah.03g135710 Amaranthus hybridus HOM05D000002 ORTHO05D000047 2.9e-15 86.3 176 35.8
FvH4_4g23000 Fragaria vesca HOM05D006285 ORTHO05D007249 8.5e-15 84.7 212 32.5
SalBow2G0692 Salvia bowleyana HOM05D006285 ORTHO05D007249 1.4e-14 84.0 119 44.5
Sc04g0010480 Simmondsia chinensis HOM05D006285 ORTHO05D007249 1.4e-14 84.0 165 36.4
RcHm_v2.0_Chr4g0429271 Rosa chinensis HOM05D006285 ORTHO05D007249 3.2e-14 82.8 170 37.1
Nn3g16318 Nelumbo nucifera HOM05D006285 ORTHO05D007249 1.2e-13 80.9 135 37.0
MBI07_g36277_MAGBIO Magnolia biondii HOM05D006285 ORTHO05D007249 1.6e-13 80.5 187 38.0
ECA246G0706 Erigeron canadensis HOM05D006285 ORTHO05D007249 2.7e-13 79.7 225 31.6
FAN12G2625 Fragaria x ananassa HOM05D006285 ORTHO05D007249 3.0e-12 76.3 205 32.2
FAN17G1869 Fragaria x ananassa HOM05D006285 ORTHO05D007249 3.0e-12 76.3 198 35.4
FAN07G2449 Fragaria x ananassa HOM05D006285 ORTHO05D007249 3.9e-12 75.9 203 33.5
CAN.G1179.3 Capsicum annuum HOM05D006285 ORTHO05D000105 5.1e-12 75.5 123 35.0
Sc11g0000190 Simmondsia chinensis HOM05D006285 ORTHO05D007249 6.7e-12 75.1 132 37.9
Zm00001eb084980 Zea mays HOM05D006285 ORTHO05D007249 5.7e-11 72.0 101 40.6
Rhsim12G0019500 Rhododendron simsii HOM05D006285 ORTHO05D007249 7.4e-11 71.6 162 34.0
CDE02G4729 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 1.7e-10 70.5 199 32.2
Oeu055473.1 Olea europaea HOM05D006285 ORTHO05D007249 3.7e-10 69.3 185 30.3
SEGI_23736 Sequoiadendron giganteum HOM05D006285 ORTHO05D007249 1.8e-09 67.0 95 38.9
Os04g0395800 Oryza sativa ssp. japonica HOM05D006285 ORTHO05D007249 9.1e-09 64.7 88 42.0
AUR62028862 Chenopodium quinoa HOM05D006285 ORTHO05D007249 1.5e-08 63.9 126 36.5
HPP92_023090 Vanilla planifolia HOM05D006285 ORTHO05D007249 3.4e-08 62.8 191 28.8
SEGI_20867 Sequoiadendron giganteum HOM05D006285 ORTHO05D007249 4.5e-08 62.4 183 30.6
GSVIVG01023256001 Vitis vinifera HOM05D001047 ORTHO05D000768 1.7e-07 60.5 101 38.6
Gohir.D05G036200 Gossypium hirsutum HOM05D001047 ORTHO05D000768 2.2e-07 60.1 104 35.6
Gorai.009G036800 Gossypium raimondii HOM05D001047 ORTHO05D000768 2.2e-07 60.1 104 35.6
Sc18g0002760 Simmondsia chinensis HOM05D001047 ORTHO05D000768 2.9e-07 59.7 183 31.7
Sopen01g005240 Solanum pennellii HOM05D015436 ORTHO05D018126 2.9e-07 59.7 103 36.9
Gohir.A05G034800 Gossypium hirsutum HOM05D001047 ORTHO05D000768 5.0e-07 58.9 104 34.6
MD15G1434400 Malus domestica HOM05D001047 ORTHO05D000768 6.5e-07 58.5 98 36.7
Aqoxy3G01789 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 1.1e-06 57.8 105 42.9
PSO724G1109 Papaver somniferum HOM05D001047 ORTHO05D000768 1.1e-06 57.8 105 36.2
ATR0006G052 Amborella trichopoda HOM05D001047 ORTHO05D000768 2.5e-06 56.6 114 36.8
AUR62005696 Chenopodium quinoa HOM05D006285 ORTHO05D007249 3.2e-06 56.2 181 31.5
ECA236G0223 Erigeron canadensis HOM05D001047 ORTHO05D000768 3.2e-06 56.2 132 34.1
FvH4_6g35140 Fragaria vesca HOM05D001047 ORTHO05D000768 3.2e-06 56.2 95 35.8
FAN14G3719 Fragaria x ananassa HOM05D001047 ORTHO05D000768 4.2e-06 55.8 91 36.3
Hma1.2p1_0884F.1_g232490 Hydrangea macrophylla HOM05D001047 ORTHO05D000768 5.5e-06 55.5 102 36.3
vmacro16080 Vaccinium macrocarpon HOM05D006285 ORTHO05D007249 5.5e-06 55.5 184 28.8
FAN09G2579 Fragaria x ananassa HOM05D001047 ORTHO05D000768 7.2e-06 55.1 109 33.9
Gorai.004G285100 Gossypium raimondii HOM05D001047 ORTHO05D000768 7.2e-06 55.1 125 34.4
PSO386G0059 Papaver somniferum HOM05D001047 ORTHO05D000768 7.2e-06 55.1 173 30.1
PGR083G2757 Punica granatum HOM05D002924 ORTHO05D003122 7.2e-06 55.1 123 33.3
SEGI_34216 Sequoiadendron giganteum HOM05D012961 ORTHO05D000768 7.2e-06 55.1 241 27.0
Dinv07479 Davidia involucrata HOM05D001047 ORTHO05D000768 9.4e-06 54.7 112 33.0


User provided reference genes

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