Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p05710 Brassica napus HOM05D003358 ORTHO05D003864 6.0e-184 647.5 359 100.0
BolC3t13084H Brassica oleracea HOM05D003358 ORTHO05D003864 5.6e-97 358.6 178 99.4
AL1G26440 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 1.0e-82 311.2 281 57.7
Carub.0001s1424 Capsella rubella HOM05D003358 ORTHO05D003864 2.0e-78 297.0 278 53.6
BcaB03g13087 Brassica carinata HOM05D003358 ORTHO05D003864 2.4e-55 220.3 302 46.7
BolC8t49305H Brassica oleracea HOM05D003358 ORTHO05D003864 8.4e-53 211.8 274 46.0
BolC8t49311H Brassica oleracea HOM05D003358 ORTHO05D003864 2.4e-52 210.3 254 48.8
BolC8t49309H Brassica oleracea HOM05D003358 ORTHO05D003864 4.2e-52 209.5 254 48.4
A08p31850 Brassica napus HOM05D003358 ORTHO05D003864 1.8e-47 194.1 231 48.9
BcaC07g38753 Brassica carinata HOM05D003358 ORTHO05D003864 4.5e-46 189.5 276 42.4
C08p16840 Brassica napus HOM05D003358 ORTHO05D003864 4.5e-46 189.5 276 42.4
AL1G26420 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 1.7e-45 187.6 245 42.4
A03p04980 Brassica napus HOM05D003358 ORTHO05D003864 3.8e-45 186.4 116 83.6
BcaC07g38754 Brassica carinata HOM05D003358 ORTHO05D003864 4.3e-41 172.9 249 43.4
A08p31860 Brassica napus HOM05D003358 ORTHO05D003864 1.4e-28 131.3 154 45.5
C08p16850 Brassica napus HOM05D003358 ORTHO05D003864 2.5e-28 130.6 192 43.8
AL1G26690 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 5.5e-28 129.4 106 63.2
AL1G26480 Arabidopsis lyrata HOM05D003358 ORTHO05D013743 8.8e-26 122.1 243 36.6
TAR633G1108 Trochodendron aralioides HOM05D003358 ORTHO05D003864 4.3e-25 119.8 271 35.1
Gohir.A11G120000 Gossypium hirsutum HOM05D003358 ORTHO05D003864 7.4e-25 119.0 243 36.6
FvH4_2g24080 Fragaria vesca HOM05D003358 ORTHO05D003864 1.3e-24 118.2 283 33.9
FAN15G0418 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.3e-24 118.2 283 33.9
FAN24G0501 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.3e-24 118.2 283 33.9
VMungo0720G0236 Vigna mungo HOM05D003358 ORTHO05D003864 1.7e-24 117.9 261 33.7
FAN20G3017 Fragaria x ananassa HOM05D003358 ORTHO05D003864 3.7e-24 116.7 278 34.2
Glyma.10G024100 Glycine max HOM05D003358 ORTHO05D003864 3.7e-24 116.7 266 34.2
Gohir.A08G044700 Gossypium hirsutum HOM05D003358 ORTHO05D003864 3.7e-24 116.7 224 37.1
Gohir.D08G054400 Gossypium hirsutum HOM05D003358 ORTHO05D003864 3.7e-24 116.7 224 37.1
Gorai.004G054800 Gossypium raimondii HOM05D003358 ORTHO05D003864 3.7e-24 116.7 224 37.1
Nn4g26144 Nelumbo nucifera HOM05D003358 ORTHO05D003864 3.7e-24 116.7 270 34.8
Thhalv10008106m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 4.8e-24 116.3 280 33.2
Lj5g0011221 Lotus japonicus HOM05D003358 ORTHO05D003864 8.2e-24 115.5 197 38.6
Haze_04760 Corylus avellana HOM05D003358 ORTHO05D003864 1.1e-23 115.2 281 34.5
Phvul.007G169100 Phaseolus vulgaris HOM05D003358 ORTHO05D003864 1.1e-23 115.2 261 33.7
RcHm_v2.0_Chr6g0291861 Rosa chinensis HOM05D003358 ORTHO05D003864 1.1e-23 115.2 262 34.4
TPR.G13299 Trifolium pratense HOM05D003358 ORTHO05D003864 1.1e-23 115.2 252 32.1
BcaB07g31539 Brassica carinata HOM05D003358 ORTHO05D003864 2.4e-23 114.0 274 33.9
Glyma.02G149800 Glycine max HOM05D003358 ORTHO05D003864 2.4e-23 114.0 259 33.2
Medtr1g089900 Medicago truncatula HOM05D003358 ORTHO05D003864 3.1e-23 113.6 258 32.2
Sed0023278 Sechium edule HOM05D003358 ORTHO05D003864 3.1e-23 113.6 262 34.7
Thecc.01G284800 Theobroma cacao HOM05D003358 ORTHO05D003864 3.1e-23 113.6 271 33.9
Actinidia00727 Actinidia chinensis HOM05D003358 ORTHO05D003864 4.1e-23 113.2 262 33.2
BolC9t54582H Brassica oleracea HOM05D003358 ORTHO05D003864 4.1e-23 113.2 274 33.6
CARHR047070 Cardamine hirsuta HOM05D003358 ORTHO05D003864 4.1e-23 113.2 279 34.4
Nn1g02094 Nelumbo nucifera HOM05D003358 ORTHO05D003864 6.9e-23 112.5 271 34.7
Rhsim01G0276900 Rhododendron simsii HOM05D003358 ORTHO05D003864 6.9e-23 112.5 263 33.1
Sp2g00790 Schrenkiella parvula HOM05D003358 ORTHO05D003864 6.9e-23 112.5 280 33.6
BcaC04g22672 Brassica carinata HOM05D003358 ORTHO05D003864 9.1e-23 112.1 274 33.2
A09p13990 Brassica napus HOM05D003358 ORTHO05D003864 9.1e-23 112.1 274 33.2
C09p16810 Brassica napus HOM05D003358 ORTHO05D003864 9.1e-23 112.1 274 33.2
BraA09t37046Z Brassica rapa HOM05D003358 ORTHO05D003864 9.1e-23 112.1 274 33.2
QL12p022545 Quercus lobata HOM05D003358 ORTHO05D003864 9.1e-23 112.1 270 35.9
Aa31LG1G29500 Aethionema arabicum HOM05D003358 ORTHO05D003864 1.2e-22 111.7 273 33.3
Ca_10402_v3 Cicer arietinum L. HOM05D003358 ORTHO05D003864 1.5e-22 111.3 197 36.5
MELO3C015867.2 Cucumis melo HOM05D003358 ORTHO05D003864 1.5e-22 111.3 276 33.0
Lalb_Chr06g0163131 Lupinus albus HOM05D003358 ORTHO05D003864 1.5e-22 111.3 205 38.0
Eucgr.H01525 Eucalyptus grandis HOM05D003358 ORTHO05D003864 2.0e-22 110.9 207 39.1
MD03G1270200 Malus domestica HOM05D003358 ORTHO05D003864 2.0e-22 110.9 281 33.8
arahy.Tifrunner.gnm1.ann1.KX9J6A Arachis hypogaea HOM05D003358 ORTHO05D003864 2.6e-22 110.5 261 32.2
arahy.Tifrunner.gnm1.ann1.N9ZP1U Arachis hypogaea HOM05D003358 ORTHO05D003864 2.6e-22 110.5 261 32.2
Cfa006095 Carpinus fangiana HOM05D003358 ORTHO05D003864 2.6e-22 110.5 286 32.5
Hund05356 Selenicereus undatus HOM05D003358 ORTHO05D003864 2.6e-22 110.5 207 39.1
AT1G14688 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 3.4e-22 110.2 105 51.4
ClCG09G006810 Citrullus lanatus HOM05D003358 ORTHO05D003864 3.4e-22 110.2 276 33.3
AT1G63900 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 4.5e-22 109.8 273 33.0
MD11G1291200 Malus domestica HOM05D003358 ORTHO05D003864 4.5e-22 109.8 270 34.1
CiPaw.07G095400 Carya illinoinensis HOM05D003358 ORTHO05D003864 5.9e-22 109.4 262 33.6
Manes.05G072700 Manihot esculenta HOM05D003358 ORTHO05D003864 5.9e-22 109.4 207 38.2
SalBow4G3039 Salvia bowleyana HOM05D003358 ORTHO05D003864 5.9e-22 109.4 277 32.5
TWI23G0223 Tripterygium wilfordii HOM05D003358 ORTHO05D003864 5.9e-22 109.4 271 31.7
Prupe.8G246900 Prunus persica HOM05D003358 ORTHO05D003864 7.7e-22 109.0 206 39.8
Oeu001439.1 Olea europaea HOM05D003358 ORTHO05D003864 1.0e-21 108.6 271 33.2
Psat6g168920 Pisum sativum HOM05D003358 ORTHO05D003864 1.0e-21 108.6 205 38.0
PGSC0003DMG402020120 Solanum tuberosum HOM05D003358 ORTHO05D003864 1.0e-21 108.6 271 32.1
AL2G11230 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 1.3e-21 108.2 273 33.0
MSTRG.21581 Avicennia marina HOM05D003358 ORTHO05D003864 1.7e-21 107.8 263 31.9
CsaV3_7G028540 Cucumis sativus L. HOM05D003358 ORTHO05D003864 1.7e-21 107.8 276 31.9
Lj1C44G0 Lonicera japonica HOM05D003358 ORTHO05D003864 1.7e-21 107.8 275 32.4
Migut.D00256 Erythranthe guttata HOM05D003358 ORTHO05D003864 2.2e-21 107.5 201 38.3
Hma1.2p1_0257F.1_g103860 Hydrangea macrophylla HOM05D003358 ORTHO05D003864 2.2e-21 107.5 267 34.1
TPR.G13400 Trifolium pratense HOM05D003358 ORTHO05D003864 2.9e-21 107.1 276 32.2
EL10Ac7g17196 Beta vulgaris HOM05D003358 ORTHO05D003864 3.8e-21 106.7 282 34.0
CAN.G1682.13 Capsicum annuum HOM05D003358 ORTHO05D003864 3.8e-21 106.7 271 31.7
AUR62036783 Chenopodium quinoa HOM05D003358 ORTHO05D003864 3.8e-21 106.7 282 33.3
Nitab4.5_0007767g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 3.8e-21 106.7 209 39.2
HPP92_000042 Vanilla planifolia HOM05D003358 ORTHO05D003864 3.8e-21 106.7 265 32.8
GSVIVG01011070001 Vitis vinifera HOM05D003358 ORTHO05D003864 3.8e-21 106.7 284 33.8
Ah.08g212910 Amaranthus hybridus HOM05D003358 ORTHO05D003864 5.0e-21 106.3 272 34.2
Carub.0002s0094 Capsella rubella HOM05D003358 ORTHO05D003864 5.0e-21 106.3 273 32.6
Ciclev10020955m.g Citrus clementina HOM05D003358 ORTHO05D003864 5.0e-21 106.3 207 37.7
Cc01_g19840 Coffea canephora HOM05D003358 ORTHO05D003864 5.0e-21 106.3 271 32.8
Peaxi162Scf00783g00337 Petunia axillaris HOM05D003358 ORTHO05D003864 5.0e-21 106.3 288 31.6
Solyc06g084360.4 Solanum lycopersicum HOM05D003358 ORTHO05D003864 5.0e-21 106.3 263 31.6
unitig_0.g80 Utricularia gibba HOM05D003358 ORTHO05D003864 5.0e-21 106.3 238 30.7
Dinv11261 Davidia involucrata HOM05D003358 ORTHO05D003864 6.5e-21 105.9 265 33.6
Sopen06g035750 Solanum pennellii HOM05D003358 ORTHO05D003864 6.5e-21 105.9 263 31.6
AUR62033697 Chenopodium quinoa HOM05D003358 ORTHO05D003864 8.5e-21 105.5 282 33.3
PSO170G4489 Papaver somniferum HOM05D003358 ORTHO05D003864 8.5e-21 105.5 287 32.1
PSO407G0137 Papaver somniferum HOM05D003358 ORTHO05D003864 8.5e-21 105.5 287 32.1
Potri.014G138000 Populus trichocarpa HOM05D003358 ORTHO05D003864 8.5e-21 105.5 207 36.7
CSS0003095 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 1.1e-20 105.1 264 33.0
Sabra14G0104100 Salix brachista HOM05D003358 ORTHO05D003864 1.1e-20 105.1 207 36.7
ATR0626G053 Amborella trichopoda HOM05D003358 ORTHO05D003864 1.9e-20 104.4 207 38.6
CDE05G1806 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 1.9e-20 104.4 209 38.8
Zm00001eb110530 Zea mays HOM05D003358 ORTHO05D003864 1.9e-20 104.4 265 34.3
CSS0018318 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 2.5e-20 104.0 273 34.4
CANSAT25G0133 Cannabis sativa HOM05D003358 ORTHO05D003864 2.5e-20 104.0 197 37.6
ECA247G2569 Erigeron canadensis HOM05D003358 ORTHO05D003864 2.5e-20 104.0 273 31.1
BraA03t09834Z Brassica rapa HOM05D003358 ORTHO05D003864 4.2e-20 103.2 210 36.2
CDE07G0407 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 4.2e-20 103.2 209 38.3
Os07g0647800 Oryza sativa ssp. japonica HOM05D003358 ORTHO05D003864 5.5e-20 102.8 203 38.9
vmacro14942 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 9.4e-20 102.1 278 33.1
CAN.G1682.14 Capsicum annuum HOM05D003358 ORTHO05D003864 1.2e-19 101.7 209 35.9
Ciclev10020957m.g Citrus clementina HOM05D003358 ORTHO05D003864 1.2e-19 101.7 207 37.2
Sc17g0003900 Simmondsia chinensis HOM05D003358 ORTHO05D003864 1.2e-19 101.7 207 38.2
SGA_v2.0_scaffold1G00442 Striga asiatica HOM05D003358 ORTHO05D003864 1.2e-19 101.7 265 32.1
MBI17_g17897_MAGBIO Magnolia biondii HOM05D003358 ORTHO05D003864 3.6e-19 100.1 251 32.7
Medtr7g094290 Medicago truncatula HOM05D003358 ORTHO05D003864 4.7e-19 99.8 188 37.8
DCAR_012453 Daucus carota HOM05D003358 ORTHO05D003864 1.0e-18 98.6 209 36.4
HanXRQChr10g0282971 Helianthus annuus HOM05D003358 ORTHO05D003864 1.0e-18 98.6 201 35.8
Lsat_1_v5_gn_9_4540 Lactuca sativa HOM05D003358 ORTHO05D003864 2.3e-18 97.4 293 30.4
THA.LOC104823098 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 5.1e-18 96.3 264 31.8
Actinidia24873 Actinidia chinensis HOM05D003358 ORTHO05D003864 1.5e-17 94.7 262 33.2
Aa31LG10G16880 Aethionema arabicum HOM05D003358 ORTHO05D003864 1.5e-17 94.7 195 34.9
BcaB01g06302 Brassica carinata HOM05D003358 ORTHO05D003864 1.5e-17 94.7 219 33.8
Gohir.D11G124766 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.5e-17 94.7 178 39.3
Carub.0001s1427 Capsella rubella HOM05D003358 ORTHO05D003864 2.0e-17 94.4 243 31.3
Pp3c22_7850 Physcomitrium patens HOM05D003358 ORTHO05D003864 2.0e-17 94.4 281 30.6
Carub.0001s1426 Capsella rubella HOM05D003358 ORTHO05D043389 2.6e-17 94.0 230 33.5
AagrBONN_evm.TU.Sc2ySwM_368.2570 Anthoceros agrestis HOM05D003358 ORTHO05D003864 3.3e-17 93.6 202 33.7
BraA04t15751Z Brassica rapa HOM05D003358 ORTHO05D003864 1.3e-16 91.7 193 33.2
MD11G1291000 Malus domestica HOM05D003358 ORTHO05D003864 1.3e-16 91.7 212 32.5
Mapoly0009s0167 Marchantia polymorpha HOM05D003358 ORTHO05D003864 1.3e-16 91.7 205 35.1
SMO116G0196 Selaginella moellendorffii HOM05D003358 ORTHO05D003864 1.3e-16 91.7 204 35.8
vmacro02543 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 1.3e-16 91.7 259 30.5
C03p05670 Brassica napus HOM05D003358 ORTHO05D003864 1.7e-16 91.3 195 34.9
BolC3t13079H Brassica oleracea HOM05D003358 ORTHO05D003864 1.7e-16 91.3 195 34.9
Duzib138G0559 Durio zibethinus HOM05D003358 ORTHO05D003864 2.2e-16 90.9 242 32.2
BcaC07g42712 Brassica carinata HOM05D003358 ORTHO05D003864 2.8e-16 90.5 236 30.1
Cpa.g.sc9.121 Carica papaya HOM05D003358 ORTHO05D003864 3.7e-16 90.1 180 37.2
Migut.N02149 Erythranthe guttata HOM05D003358 ORTHO05D003864 3.7e-16 90.1 268 28.7
A04p00330 Brassica napus HOM05D003358 ORTHO05D003864 4.8e-16 89.7 193 32.6
A09p54880 Brassica napus HOM05D003358 ORTHO05D003864 4.8e-16 89.7 266 28.9
Sed0022837 Sechium edule HOM05D003358 ORTHO05D003864 4.8e-16 89.7 237 31.2
AT1G59560 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 8.2e-16 89.0 207 31.4
Thhalv10024073m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 2.4e-15 87.4 282 30.1
BolC4t24547H Brassica oleracea HOM05D003358 ORTHO05D003864 4.1e-15 86.7 203 32.0
Medtr1g089910 Medicago truncatula HOM05D003358 ORTHO05D003864 4.1e-15 86.7 220 30.5
C03p05700 Brassica napus HOM05D011503 ORTHO05D013743 5.3e-15 86.3 189 34.9
BolC3t13082H Brassica oleracea HOM05D011503 ORTHO05D013743 5.3e-15 86.3 189 34.9
CSS0028362 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 7.0e-15 85.9 188 36.7
Pp3c19_9460 Physcomitrium patens HOM05D003358 ORTHO05D003864 1.2e-14 85.1 199 32.2
Migut.N02147 Erythranthe guttata HOM05D003358 ORTHO05D003864 1.5e-14 84.7 274 29.9
Nitab4.5_0002093g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 1.5e-14 84.7 221 31.2
Zm00001eb329440 Zea mays HOM05D003358 ORTHO05D003864 2.0e-14 84.3 182 37.4
Atru.chr9.1958 Acer truncatum HOM05D003358 ORTHO05D003864 2.6e-14 84.0 190 32.1
BcaC02g10340 Brassica carinata HOM05D003358 ORTHO05D003864 3.5e-14 83.6 199 32.7
C04p30150 Brassica napus HOM05D003358 ORTHO05D003864 3.5e-14 83.6 199 32.7
Gorai.007G133700 Gossypium raimondii HOM05D003358 ORTHO05D003864 5.9e-14 82.8 231 32.0
Migut.N02146 Erythranthe guttata HOM05D003358 ORTHO05D003864 1.0e-13 82.0 229 28.4
A03p04950 Brassica napus HOM05D011503 ORTHO05D013743 2.9e-13 80.5 189 33.3
BraA03t09833Z Brassica rapa HOM05D011503 ORTHO05D013743 2.9e-13 80.5 189 33.3
Duzib211G0202 Durio zibethinus HOM05D003358 ORTHO05D003864 2.9e-13 80.5 245 29.4
SEGI_02468 Sequoiadendron giganteum HOM05D003358 ORTHO05D003864 3.8e-13 80.1 280 27.5
Medtr1g089940 Medicago truncatula HOM05D003358 ORTHO05D003864 6.5e-13 79.3 215 31.6
BcaB08g34405 Brassica carinata HOM05D011503 ORTHO05D013743 8.5e-13 79.0 226 28.8
BcaB01g06301 Brassica carinata HOM05D011503 ORTHO05D013743 2.5e-12 77.4 234 29.1
Rhsim13G0022000 Rhododendron simsii HOM05D003358 ORTHO05D003864 1.2e-11 75.1 159 35.8
Prupe.8G246300 Prunus persica HOM05D003358 ORTHO05D003864 2.1e-11 74.3 222 30.6
BolC8t49308H Brassica oleracea HOM05D003358 ORTHO05D003864 4.7e-11 73.2 69 52.2
BcaB01g05487 Brassica carinata HOM05D011503 ORTHO05D003864 2.3e-10 70.9 147 35.4
FAN27G2094 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.3e-10 70.9 185 30.8
BcaB01g05489 Brassica carinata HOM05D011503 ORTHO05D013743 5.2e-10 69.7 85 43.5
Medtr1g089920 Medicago truncatula HOM05D003358 ORTHO05D003864 8.8e-10 68.9 226 27.4
Prupe.8G246200 Prunus persica HOM05D003358 ORTHO05D003864 1.1e-09 68.6 172 32.6
A03p04960 Brassica napus HOM05D011503 ORTHO05D013743 1.5e-09 68.2 217 32.3
CARHR014980 Cardamine hirsuta HOM05D003358 ORTHO05D043389 4.4e-09 66.6 97 39.2
Carub.0002s0588 Capsella rubella HOM05D003358 ORTHO05D003864 1.7e-08 64.7 99 37.4
TPR.G32824 Trifolium pratense HOM05D003358 ORTHO05D003864 4.8e-08 63.2 259 25.5
Atru.chr5.1348 Acer truncatum HOM05D003358 ORTHO05D003864 1.1e-07 62.0 80 42.5
Migut.N02166 Erythranthe guttata HOM05D003358 ORTHO05D003864 9.1e-07 58.9 120 32.5
BcaB01g05486 Brassica carinata HOM05D026960 ORTHO05D031882 1.6e-06 58.2 177 27.1
BcaB01g05488 Brassica carinata HOM05D011503 ORTHO05D013743 2.6e-06 57.4 136 31.6
TPR.G36026 Trifolium pratense HOM05D003358 ORTHO05D003864 2.6e-06 57.4 104 39.4
TAR362G0768 Trochodendron aralioides HOM05D003358 ORTHO05D003864 2.6e-06 57.4 101 39.6
Oeu011175.1 Olea europaea HOM05D000273 ORTHO05D000198 5.9e-06 56.2 168 32.1


User provided reference genes

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