Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p05700 Brassica napus HOM05D011503 ORTHO05D013743 6.9e-139 497.3 249 100.0
BolC3t13082H Brassica oleracea HOM05D011503 ORTHO05D013743 6.9e-139 497.3 249 100.0
A03p04950 Brassica napus HOM05D011503 ORTHO05D013743 2.2e-124 449.1 250 90.8
BraA03t09833Z Brassica rapa HOM05D011503 ORTHO05D013743 2.2e-124 449.1 250 90.8
BcaB01g06301 Brassica carinata HOM05D011503 ORTHO05D013743 2.6e-85 319.3 225 73.3
BcaB01g05488 Brassica carinata HOM05D011503 ORTHO05D013743 7.1e-75 284.6 208 74.0
BcaB08g34405 Brassica carinata HOM05D011503 ORTHO05D013743 1.6e-66 256.9 246 58.9
BcaC07g41563 Brassica carinata HOM05D011503 ORTHO05D013743 4.2e-59 232.3 295 48.8
C08p45620 Brassica napus HOM05D011503 ORTHO05D013743 4.2e-59 232.3 295 48.8
BolC8t52115H Brassica oleracea HOM05D011503 ORTHO05D013743 4.2e-59 232.3 295 48.8
AL1G26480 Arabidopsis lyrata HOM05D003358 ORTHO05D013743 6.9e-46 188.3 243 46.5
C03p05670 Brassica napus HOM05D003358 ORTHO05D003864 2.6e-37 159.8 246 41.9
BolC3t13079H Brassica oleracea HOM05D003358 ORTHO05D003864 2.6e-37 159.8 246 41.9
BraA03t09834Z Brassica rapa HOM05D003358 ORTHO05D003864 2.6e-37 159.8 246 41.5
Carub.0001s1427 Capsella rubella HOM05D003358 ORTHO05D003864 1.6e-34 150.6 244 41.4
BcaB01g06302 Brassica carinata HOM05D003358 ORTHO05D003864 1.0e-33 147.9 246 37.8
A09p62040 Brassica napus HOM05D011503 ORTHO05D013743 3.8e-28 129.4 224 40.2
BraA09t41567Z Brassica rapa HOM05D011503 ORTHO05D013743 7.9e-26 121.7 103 60.2
AL1G26420 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 2.0e-24 117.1 228 36.0
BcaB01g06323 Brassica carinata HOM05D003303 ORTHO05D000019 2.0e-24 117.1 70 85.7
A03p04960 Brassica napus HOM05D011503 ORTHO05D013743 1.7e-23 114.0 245 34.3
BcaB01g05487 Brassica carinata HOM05D011503 ORTHO05D003864 4.1e-22 109.4 150 42.7
Potri.014G138000 Populus trichocarpa HOM05D003358 ORTHO05D003864 1.6e-18 97.4 247 31.6
CSS0003095 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 2.7e-18 96.7 210 35.2
CSS0018318 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 3.6e-18 96.3 210 35.7
Manes.05G072700 Manihot esculenta HOM05D003358 ORTHO05D003864 3.6e-18 96.3 247 30.8
Thecc.01G284800 Theobroma cacao HOM05D003358 ORTHO05D003864 1.4e-17 94.4 202 34.2
CANSAT25G0133 Cannabis sativa HOM05D003358 ORTHO05D003864 1.8e-17 94.0 239 31.4
Sabra14G0104100 Salix brachista HOM05D003358 ORTHO05D003864 1.8e-17 94.0 247 31.2
MD03G1270200 Malus domestica HOM05D003358 ORTHO05D003864 2.3e-17 93.6 246 29.7
Hma1.2p1_0257F.1_g103860 Hydrangea macrophylla HOM05D003358 ORTHO05D003864 3.0e-17 93.2 241 32.8
Dinv11261 Davidia involucrata HOM05D003358 ORTHO05D003864 3.9e-17 92.8 216 33.3
CDE07G0407 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 1.1e-16 91.3 216 33.3
Gohir.A08G044700 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.1e-16 91.3 241 30.7
Gohir.D08G054400 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.1e-16 91.3 241 30.7
Gorai.004G054800 Gossypium raimondii HOM05D003358 ORTHO05D003864 1.1e-16 91.3 241 30.7
TWI23G0223 Tripterygium wilfordii HOM05D003358 ORTHO05D003864 1.1e-16 91.3 247 30.0
Haze_04760 Corylus avellana HOM05D003358 ORTHO05D003864 1.5e-16 90.9 246 30.1
Migut.D00256 Erythranthe guttata HOM05D003358 ORTHO05D003864 1.5e-16 90.9 255 31.4
QL12p022545 Quercus lobata HOM05D003358 ORTHO05D003864 1.5e-16 90.9 246 30.5
Actinidia24873 Actinidia chinensis HOM05D003358 ORTHO05D003864 2.0e-16 90.5 210 33.8
MD11G1291200 Malus domestica HOM05D003358 ORTHO05D003864 2.0e-16 90.5 247 30.8
SalBow4G3039 Salvia bowleyana HOM05D003358 ORTHO05D003864 2.0e-16 90.5 255 31.4
Solyc06g084360.4 Solanum lycopersicum HOM05D003358 ORTHO05D003864 2.0e-16 90.5 214 32.7
AagrBONN_evm.TU.Sc2ySwM_368.2570 Anthoceros agrestis HOM05D003358 ORTHO05D003864 2.6e-16 90.1 244 34.0
AL1G26440 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 2.6e-16 90.1 191 35.1
Ciclev10020955m.g Citrus clementina HOM05D003358 ORTHO05D003864 2.6e-16 90.1 197 35.0
Peaxi162Scf00783g00337 Petunia axillaris HOM05D003358 ORTHO05D003864 2.6e-16 90.1 191 35.6
THA.LOC104823098 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 2.6e-16 90.1 228 33.3
Sopen06g035750 Solanum pennellii HOM05D003358 ORTHO05D003864 3.3e-16 89.7 214 32.7
HPP92_000042 Vanilla planifolia HOM05D003358 ORTHO05D003864 3.3e-16 89.7 248 29.8
HanXRQChr10g0282971 Helianthus annuus HOM05D003358 ORTHO05D003864 4.4e-16 89.4 247 30.8
PGSC0003DMG402020120 Solanum tuberosum HOM05D003358 ORTHO05D003864 4.4e-16 89.4 210 32.9
Atru.chr9.1958 Acer truncatum HOM05D003358 ORTHO05D003864 5.7e-16 89.0 183 33.3
Cfa006095 Carpinus fangiana HOM05D003358 ORTHO05D003864 5.7e-16 89.0 227 31.3
Nn1g02094 Nelumbo nucifera HOM05D003358 ORTHO05D003864 5.7e-16 89.0 247 30.0
Prupe.8G246900 Prunus persica HOM05D003358 ORTHO05D003864 5.7e-16 89.0 246 30.1
TAR633G1108 Trochodendron aralioides HOM05D003358 ORTHO05D003864 5.7e-16 89.0 204 33.8
AT1G63900 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 7.4e-16 88.6 248 31.0
Lj5g0011221 Lotus japonicus HOM05D003358 ORTHO05D003864 7.4e-16 88.6 246 30.5
SGA_v2.0_scaffold1G00442 Striga asiatica HOM05D003358 ORTHO05D003864 7.4e-16 88.6 248 32.3
CiPaw.07G095400 Carya illinoinensis HOM05D003358 ORTHO05D003864 9.7e-16 88.2 196 33.7
ClCG09G006810 Citrullus lanatus HOM05D003358 ORTHO05D003864 9.7e-16 88.2 240 31.7
Cc01_g19840 Coffea canephora HOM05D003358 ORTHO05D003864 9.7e-16 88.2 216 31.9
Glyma.02G149800 Glycine max HOM05D003358 ORTHO05D003864 9.7e-16 88.2 246 30.5
Gohir.A11G120000 Gossypium hirsutum HOM05D003358 ORTHO05D003864 9.7e-16 88.2 193 34.2
Lsat_1_v5_gn_9_4540 Lactuca sativa HOM05D003358 ORTHO05D003864 9.7e-16 88.2 247 30.0
Nitab4.5_0007767g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 9.7e-16 88.2 187 35.8
RcHm_v2.0_Chr6g0291861 Rosa chinensis HOM05D003358 ORTHO05D003864 1.3e-15 87.8 241 30.3
VMungo0720G0236 Vigna mungo HOM05D003358 ORTHO05D003864 1.3e-15 87.8 246 30.5
Carub.0002s0094 Capsella rubella HOM05D003358 ORTHO05D003864 1.7e-15 87.4 248 31.0
CAN.G1682.13 Capsicum annuum HOM05D003358 ORTHO05D003864 1.7e-15 87.4 190 34.2
CDE05G1806 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 1.7e-15 87.4 193 34.7
DCAR_012453 Daucus carota HOM05D003358 ORTHO05D003864 1.7e-15 87.4 196 34.7
ECA247G2569 Erigeron canadensis HOM05D003358 ORTHO05D003864 1.7e-15 87.4 241 32.0
Glyma.10G024100 Glycine max HOM05D003358 ORTHO05D003864 1.7e-15 87.4 246 30.5
Phvul.007G169100 Phaseolus vulgaris HOM05D003358 ORTHO05D003864 1.7e-15 87.4 246 30.1
AL2G11230 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 2.2e-15 87.0 248 30.6
Cpa.g.sc9.121 Carica papaya HOM05D003358 ORTHO05D003864 2.2e-15 87.0 185 35.1
Actinidia00727 Actinidia chinensis HOM05D003358 ORTHO05D003864 2.8e-15 86.7 209 33.5
CSS0028362 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 2.8e-15 86.7 179 37.4
Lj1C44G0 Lonicera japonica HOM05D003358 ORTHO05D003864 2.8e-15 86.7 247 30.4
Os07g0647800 Oryza sativa ssp. japonica HOM05D003358 ORTHO05D003864 2.8e-15 86.7 241 32.0
Sp2g00790 Schrenkiella parvula HOM05D003358 ORTHO05D003864 2.8e-15 86.7 247 30.8
EL10Ac7g17196 Beta vulgaris HOM05D003358 ORTHO05D003864 3.7e-15 86.3 191 37.2
MELO3C015867.2 Cucumis melo HOM05D003358 ORTHO05D003864 3.7e-15 86.3 186 34.4
FAN20G3017 Fragaria x ananassa HOM05D003358 ORTHO05D003864 3.7e-15 86.3 192 32.8
Oeu001439.1 Olea europaea HOM05D003358 ORTHO05D003864 3.7e-15 86.3 205 33.2
MSTRG.21581 Avicennia marina HOM05D003358 ORTHO05D003864 4.8e-15 85.9 197 34.0
C03p05710 Brassica napus HOM05D003358 ORTHO05D003864 4.8e-15 85.9 189 34.9
BolC9t54582H Brassica oleracea HOM05D003358 ORTHO05D003864 4.8e-15 85.9 247 31.2
Ciclev10020957m.g Citrus clementina HOM05D003358 ORTHO05D003864 4.8e-15 85.9 241 31.1
CsaV3_7G028540 Cucumis sativus L. HOM05D003358 ORTHO05D003864 4.8e-15 85.9 186 34.4
FvH4_2g24080 Fragaria vesca HOM05D003358 ORTHO05D003864 4.8e-15 85.9 192 32.8
FAN15G0418 Fragaria x ananassa HOM05D003358 ORTHO05D003864 4.8e-15 85.9 192 32.8
FAN24G0501 Fragaria x ananassa HOM05D003358 ORTHO05D003864 4.8e-15 85.9 192 32.8
PSO170G4489 Papaver somniferum HOM05D003358 ORTHO05D003864 4.8e-15 85.9 194 34.0
PSO407G0137 Papaver somniferum HOM05D003358 ORTHO05D003864 4.8e-15 85.9 194 34.0
Zm00001eb110530 Zea mays HOM05D003358 ORTHO05D003864 4.8e-15 85.9 241 31.1
Aa31LG1G29500 Aethionema arabicum HOM05D003358 ORTHO05D003864 6.3e-15 85.5 241 32.0
arahy.Tifrunner.gnm1.ann1.KX9J6A Arachis hypogaea HOM05D003358 ORTHO05D003864 6.3e-15 85.5 246 30.1
arahy.Tifrunner.gnm1.ann1.N9ZP1U Arachis hypogaea HOM05D003358 ORTHO05D003864 6.3e-15 85.5 246 30.1
A09p13990 Brassica napus HOM05D003358 ORTHO05D003864 6.3e-15 85.5 247 30.8
BraA09t37046Z Brassica rapa HOM05D003358 ORTHO05D003864 6.3e-15 85.5 247 30.8
CARHR047070 Cardamine hirsuta HOM05D003358 ORTHO05D003864 6.3e-15 85.5 219 32.9
MBI17_g17897_MAGBIO Magnolia biondii HOM05D003358 ORTHO05D003864 6.3e-15 85.5 188 33.5
Sed0023278 Sechium edule HOM05D003358 ORTHO05D003864 6.3e-15 85.5 243 28.0
Sc17g0003900 Simmondsia chinensis HOM05D003358 ORTHO05D003864 8.2e-15 85.1 236 32.6
BcaC04g22672 Brassica carinata HOM05D003358 ORTHO05D003864 1.1e-14 84.7 247 30.8
C09p16810 Brassica napus HOM05D003358 ORTHO05D003864 1.1e-14 84.7 247 30.8
Ca_10402_v3 Cicer arietinum L. HOM05D003358 ORTHO05D003864 1.1e-14 84.7 241 30.3
Eucgr.H01525 Eucalyptus grandis HOM05D003358 ORTHO05D003864 1.1e-14 84.7 197 32.5
BcaB07g31539 Brassica carinata HOM05D003358 ORTHO05D003864 1.4e-14 84.3 247 30.4
Thhalv10008106m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 1.4e-14 84.3 249 30.1
GSVIVG01011070001 Vitis vinifera HOM05D003358 ORTHO05D003864 1.4e-14 84.3 247 30.0
Carub.0001s1424 Capsella rubella HOM05D003358 ORTHO05D003864 1.8e-14 84.0 250 31.2
CAN.G1682.14 Capsicum annuum HOM05D003358 ORTHO05D003864 1.8e-14 84.0 190 33.2
Lalb_Chr06g0163131 Lupinus albus HOM05D003358 ORTHO05D003864 1.8e-14 84.0 246 29.3
AUR62036783 Chenopodium quinoa HOM05D003358 ORTHO05D003864 2.4e-14 83.6 240 32.9
Pp3c22_7850 Physcomitrium patens HOM05D003358 ORTHO05D003864 2.4e-14 83.6 166 40.4
AUR62033697 Chenopodium quinoa HOM05D003358 ORTHO05D003864 3.1e-14 83.2 240 32.9
Mapoly0009s0167 Marchantia polymorpha HOM05D003358 ORTHO05D003864 7.0e-14 82.0 236 34.3
Rhsim01G0276900 Rhododendron simsii HOM05D003358 ORTHO05D003864 7.0e-14 82.0 241 31.1
BraA04t15751Z Brassica rapa HOM05D003358 ORTHO05D003864 9.1e-14 81.6 254 30.3
Ah.08g212910 Amaranthus hybridus HOM05D003358 ORTHO05D003864 1.2e-13 81.3 214 33.6
Hund05356 Selenicereus undatus HOM05D003358 ORTHO05D003864 1.2e-13 81.3 244 34.0
Zm00001eb329440 Zea mays HOM05D003358 ORTHO05D003864 1.2e-13 81.3 179 35.8
Nn4g26144 Nelumbo nucifera HOM05D003358 ORTHO05D003864 2.6e-13 80.1 192 31.8
ATR0626G053 Amborella trichopoda HOM05D003358 ORTHO05D003864 1.0e-12 78.2 246 30.1
vmacro02543 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 1.0e-12 78.2 195 31.8
A04p00330 Brassica napus HOM05D003358 ORTHO05D003864 1.7e-12 77.4 241 30.3
Psat6g168920 Pisum sativum HOM05D003358 ORTHO05D003864 2.2e-12 77.0 185 33.0
BolC3t13084H Brassica oleracea HOM05D003358 ORTHO05D003864 2.9e-12 76.6 139 38.1
Aa31LG10G16880 Aethionema arabicum HOM05D003358 ORTHO05D003864 3.8e-12 76.3 186 33.3
unitig_0.g80 Utricularia gibba HOM05D003358 ORTHO05D003864 6.5e-12 75.5 236 30.9
A08p31850 Brassica napus HOM05D003358 ORTHO05D003864 8.5e-12 75.1 194 29.9
BolC8t49309H Brassica oleracea HOM05D003358 ORTHO05D003864 8.5e-12 75.1 194 29.4
BolC8t49311H Brassica oleracea HOM05D003358 ORTHO05D003864 8.5e-12 75.1 194 29.4
Medtr1g089900 Medicago truncatula HOM05D003358 ORTHO05D003864 8.5e-12 75.1 185 33.0
Pp3c19_9460 Physcomitrium patens HOM05D003358 ORTHO05D003864 8.5e-12 75.1 160 36.2
AT1G59560 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 1.1e-11 74.7 250 31.2
BcaB03g13087 Brassica carinata HOM05D003358 ORTHO05D003864 1.1e-11 74.7 196 30.1
Nitab4.5_0002093g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 1.5e-11 74.3 149 36.2
SMO116G0196 Selaginella moellendorffii HOM05D003358 ORTHO05D003864 1.5e-11 74.3 240 30.0
TPR.G13400 Trifolium pratense HOM05D003358 ORTHO05D003864 1.5e-11 74.3 187 33.2
BcaB01g05489 Brassica carinata HOM05D011503 ORTHO05D013743 1.9e-11 73.9 90 45.6
BcaC02g10340 Brassica carinata HOM05D003358 ORTHO05D003864 2.5e-11 73.6 240 29.6
Gohir.D11G124766 Gossypium hirsutum HOM05D003358 ORTHO05D003864 2.5e-11 73.6 185 32.4
Sed0022837 Sechium edule HOM05D003358 ORTHO05D003864 2.5e-11 73.6 213 29.1
Duzib138G0559 Durio zibethinus HOM05D003358 ORTHO05D003864 3.2e-11 73.2 138 35.5
SEGI_02468 Sequoiadendron giganteum HOM05D003358 ORTHO05D003864 3.2e-11 73.2 184 33.7
TPR.G13299 Trifolium pratense HOM05D003358 ORTHO05D003864 3.2e-11 73.2 241 28.2
A09p54880 Brassica napus HOM05D003358 ORTHO05D003864 5.5e-11 72.4 193 34.2
Medtr7g094290 Medicago truncatula HOM05D003358 ORTHO05D003864 3.6e-10 69.7 168 29.8
C04p30150 Brassica napus HOM05D003358 ORTHO05D003864 6.1e-10 68.9 215 30.7
BolC4t24547H Brassica oleracea HOM05D003358 ORTHO05D003864 6.1e-10 68.9 221 31.2
Migut.N02149 Erythranthe guttata HOM05D003358 ORTHO05D003864 6.1e-10 68.9 210 29.5
Migut.N02147 Erythranthe guttata HOM05D003358 ORTHO05D003864 1.0e-09 68.2 259 28.6
BcaC07g42712 Brassica carinata HOM05D003358 ORTHO05D003864 1.4e-09 67.8 184 33.7
Rhsim13G0022000 Rhododendron simsii HOM05D003358 ORTHO05D003864 2.3e-09 67.0 209 31.1
Prupe.8G246200 Prunus persica HOM05D003358 ORTHO05D003864 3.0e-09 66.6 156 31.4
BolC8t49305H Brassica oleracea HOM05D003358 ORTHO05D003864 4.0e-09 66.2 198 30.3
vmacro14942 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 4.0e-09 66.2 194 30.9
TPR.G13403 Trifolium pratense HOM05D003358 ORTHO05D003864 1.2e-08 64.7 228 28.5
C08p16850 Brassica napus HOM05D003358 ORTHO05D003864 1.5e-08 64.3 156 30.1
Thhalv10024073m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 2.0e-08 63.9 218 29.8
Medtr1g089910 Medicago truncatula HOM05D003358 ORTHO05D003864 3.3e-08 63.2 207 28.5
Medtr1g089920 Medicago truncatula HOM05D003358 ORTHO05D003864 5.7e-08 62.4 279 25.8
Prupe.8G246300 Prunus persica HOM05D003358 ORTHO05D003864 7.5e-08 62.0 195 29.7
Medtr1g089940 Medicago truncatula HOM05D003358 ORTHO05D003864 2.8e-07 60.1 91 44.0
TAR362G0768 Trochodendron aralioides HOM05D003358 ORTHO05D003864 3.7e-07 59.7 106 39.6
Atru.chr5.1348 Acer truncatum HOM05D003358 ORTHO05D003864 6.3e-07 58.9 79 43.0
BcaC07g38753 Brassica carinata HOM05D003358 ORTHO05D003864 6.3e-07 58.9 197 30.5
C08p16840 Brassica napus HOM05D003358 ORTHO05D003864 6.3e-07 58.9 197 30.5
Migut.N02146 Erythranthe guttata HOM05D003358 ORTHO05D003864 6.3e-07 58.9 220 28.2
A08p31860 Brassica napus HOM05D003358 ORTHO05D003864 1.1e-06 58.2 170 28.8
Carub.0005s1267 Capsella rubella HOM05D003358 ORTHO05D003864 2.4e-06 57.0 142 33.1
Carub.0002s0588 Capsella rubella HOM05D003358 ORTHO05D003864 5.3e-06 55.8 142 32.4


User provided reference genes

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