Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p05670 Brassica napus HOM05D003358 ORTHO05D003864 2.3e-142 508.8 252 100.0
BolC3t13079H Brassica oleracea HOM05D003358 ORTHO05D003864 2.3e-142 508.8 252 100.0
BraA03t09834Z Brassica rapa HOM05D003358 ORTHO05D003864 1.2e-127 459.9 252 90.9
BcaB01g06302 Brassica carinata HOM05D003358 ORTHO05D003864 1.2e-109 400.2 253 81.4
A03p04960 Brassica napus HOM05D011503 ORTHO05D013743 1.5e-96 356.7 253 75.1
BcaB01g05487 Brassica carinata HOM05D011503 ORTHO05D003864 1.6e-82 310.1 167 89.8
AL1G26480 Arabidopsis lyrata HOM05D003358 ORTHO05D013743 3.8e-44 182.6 248 45.2
Carub.0001s1427 Capsella rubella HOM05D003358 ORTHO05D003864 2.1e-42 176.8 249 42.6
BcaB01g05489 Brassica carinata HOM05D011503 ORTHO05D013743 1.2e-40 171.0 145 64.1
A03p04950 Brassica napus HOM05D011503 ORTHO05D013743 9.1e-38 161.4 244 42.6
BraA03t09833Z Brassica rapa HOM05D011503 ORTHO05D013743 9.1e-38 161.4 244 42.6
C03p05700 Brassica napus HOM05D011503 ORTHO05D013743 5.9e-37 158.7 246 41.9
BolC3t13082H Brassica oleracea HOM05D011503 ORTHO05D013743 5.9e-37 158.7 246 41.9
BcaC07g41563 Brassica carinata HOM05D011503 ORTHO05D013743 8.9e-33 144.8 299 34.8
C08p45620 Brassica napus HOM05D011503 ORTHO05D013743 8.9e-33 144.8 299 34.8
BolC8t52115H Brassica oleracea HOM05D011503 ORTHO05D013743 8.9e-33 144.8 299 34.8
BcaB08g34405 Brassica carinata HOM05D011503 ORTHO05D013743 1.5e-32 144.1 244 38.9
AL1G26420 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 1.8e-30 137.1 225 39.6
BcaB01g06301 Brassica carinata HOM05D011503 ORTHO05D013743 1.8e-30 137.1 225 39.6
Carub.0001s1426 Capsella rubella HOM05D003358 ORTHO05D043389 5.8e-24 115.5 236 37.3
AL1G26440 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 9.8e-24 114.8 248 32.3
Actinidia00727 Actinidia chinensis HOM05D003358 ORTHO05D003864 1.9e-19 100.5 239 33.9
Lj1C44G0 Lonicera japonica HOM05D003358 ORTHO05D003864 1.9e-19 100.5 234 32.5
THA.LOC104823098 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 1.9e-19 100.5 228 34.2
AT1G63900 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 4.3e-19 99.4 246 32.1
Aa31LG1G29500 Aethionema arabicum HOM05D003358 ORTHO05D003864 5.6e-19 99.0 236 33.9
Gohir.A11G120000 Gossypium hirsutum HOM05D003358 ORTHO05D003864 5.6e-19 99.0 246 32.9
Thecc.01G284800 Theobroma cacao HOM05D003358 ORTHO05D003864 7.3e-19 98.6 246 32.5
Ah.08g212910 Amaranthus hybridus HOM05D003358 ORTHO05D003864 1.2e-18 97.8 234 33.8
AL2G11230 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 1.2e-18 97.8 246 32.1
BcaB01g05488 Brassica carinata HOM05D011503 ORTHO05D013743 2.1e-18 97.1 203 37.4
Carub.0002s0094 Capsella rubella HOM05D003358 ORTHO05D003864 2.1e-18 97.1 246 31.7
Sp2g00790 Schrenkiella parvula HOM05D003358 ORTHO05D003864 2.1e-18 97.1 247 32.4
CSS0018318 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 2.8e-18 96.7 243 31.3
Aa31LG10G16880 Aethionema arabicum HOM05D003358 ORTHO05D003864 3.6e-18 96.3 236 32.2
EL10Ac7g17196 Beta vulgaris HOM05D003358 ORTHO05D003864 3.6e-18 96.3 234 32.1
Haze_04760 Corylus avellana HOM05D003358 ORTHO05D003864 3.6e-18 96.3 233 32.2
Manes.05G072700 Manihot esculenta HOM05D003358 ORTHO05D003864 3.6e-18 96.3 234 32.5
Potri.014G138000 Populus trichocarpa HOM05D003358 ORTHO05D003864 3.6e-18 96.3 233 32.6
Sed0023278 Sechium edule HOM05D003358 ORTHO05D003864 3.6e-18 96.3 233 32.2
Dinv11261 Davidia involucrata HOM05D003358 ORTHO05D003864 4.7e-18 95.9 234 32.5
Sc17g0003900 Simmondsia chinensis HOM05D003358 ORTHO05D003864 4.7e-18 95.9 234 31.6
TWI23G0223 Tripterygium wilfordii HOM05D003358 ORTHO05D003864 4.7e-18 95.9 233 31.8
BolC9t54582H Brassica oleracea HOM05D003358 ORTHO05D003864 6.2e-18 95.5 247 32.0
Sabra14G0104100 Salix brachista HOM05D003358 ORTHO05D003864 6.2e-18 95.5 234 33.3
TAR633G1108 Trochodendron aralioides HOM05D003358 ORTHO05D003864 6.2e-18 95.5 234 31.6
GSVIVG01011070001 Vitis vinifera HOM05D003358 ORTHO05D003864 6.2e-18 95.5 243 31.3
CAN.G1682.13 Capsicum annuum HOM05D003358 ORTHO05D003864 8.0e-18 95.1 246 30.9
CARHR047070 Cardamine hirsuta HOM05D003358 ORTHO05D003864 8.0e-18 95.1 246 31.3
Thhalv10008106m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 8.0e-18 95.1 247 32.4
Solyc06g084360.4 Solanum lycopersicum HOM05D003358 ORTHO05D003864 8.0e-18 95.1 255 30.6
BcaB07g31539 Brassica carinata HOM05D003358 ORTHO05D003864 1.1e-17 94.7 247 32.0
Gohir.A08G044700 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.1e-17 94.7 236 33.1
Gohir.D08G054400 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.1e-17 94.7 236 33.1
Gorai.004G054800 Gossypium raimondii HOM05D003358 ORTHO05D003864 1.1e-17 94.7 236 33.1
Sopen06g035750 Solanum pennellii HOM05D003358 ORTHO05D003864 1.1e-17 94.7 255 30.6
PGSC0003DMG402020120 Solanum tuberosum HOM05D003358 ORTHO05D003864 1.1e-17 94.7 246 30.9
BcaC04g22672 Brassica carinata HOM05D003358 ORTHO05D003864 1.4e-17 94.4 247 31.6
A09p13990 Brassica napus HOM05D003358 ORTHO05D003864 1.4e-17 94.4 247 32.0
C09p16810 Brassica napus HOM05D003358 ORTHO05D003864 1.4e-17 94.4 247 31.6
BraA09t37046Z Brassica rapa HOM05D003358 ORTHO05D003864 1.4e-17 94.4 247 32.0
CSS0003095 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 1.4e-17 94.4 237 32.1
AUR62036783 Chenopodium quinoa HOM05D003358 ORTHO05D003864 1.4e-17 94.4 234 32.1
Ciclev10020955m.g Citrus clementina HOM05D003358 ORTHO05D003864 1.8e-17 94.0 243 30.0
Migut.D00256 Erythranthe guttata HOM05D003358 ORTHO05D003864 1.8e-17 94.0 234 31.6
SMO116G0196 Selaginella moellendorffii HOM05D003358 ORTHO05D003864 1.8e-17 94.0 235 29.8
Cfa006095 Carpinus fangiana HOM05D003358 ORTHO05D003864 2.3e-17 93.6 227 32.6
Nn1g02094 Nelumbo nucifera HOM05D003358 ORTHO05D003864 2.3e-17 93.6 234 32.1
RcHm_v2.0_Chr6g0291861 Rosa chinensis HOM05D003358 ORTHO05D003864 2.3e-17 93.6 245 31.8
CiPaw.07G095400 Carya illinoinensis HOM05D003358 ORTHO05D003864 3.1e-17 93.2 242 31.8
AUR62033697 Chenopodium quinoa HOM05D003358 ORTHO05D003864 3.1e-17 93.2 234 32.1
Eucgr.H01525 Eucalyptus grandis HOM05D003358 ORTHO05D003864 3.1e-17 93.2 234 31.2
Actinidia24873 Actinidia chinensis HOM05D003358 ORTHO05D003864 4.0e-17 92.8 236 32.6
MD03G1270200 Malus domestica HOM05D003358 ORTHO05D003864 4.0e-17 92.8 242 30.6
SalBow4G3039 Salvia bowleyana HOM05D003358 ORTHO05D003864 4.0e-17 92.8 237 32.1
Carub.0001s1424 Capsella rubella HOM05D003358 ORTHO05D003864 5.2e-17 92.4 233 30.0
MELO3C015867.2 Cucumis melo HOM05D003358 ORTHO05D003864 5.2e-17 92.4 232 31.9
FAN20G3017 Fragaria x ananassa HOM05D003358 ORTHO05D003864 5.2e-17 92.4 245 31.8
MBI17_g17897_MAGBIO Magnolia biondii HOM05D003358 ORTHO05D003864 5.2e-17 92.4 230 32.2
Mapoly0009s0167 Marchantia polymorpha HOM05D003358 ORTHO05D003864 5.2e-17 92.4 247 30.4
FvH4_2g24080 Fragaria vesca HOM05D003358 ORTHO05D003864 6.8e-17 92.0 245 31.8
FAN15G0418 Fragaria x ananassa HOM05D003358 ORTHO05D003864 6.8e-17 92.0 245 31.8
FAN24G0501 Fragaria x ananassa HOM05D003358 ORTHO05D003864 6.8e-17 92.0 245 31.8
CsaV3_7G028540 Cucumis sativus L. HOM05D003358 ORTHO05D003864 8.9e-17 91.7 232 31.9
Peaxi162Scf00783g00337 Petunia axillaris HOM05D003358 ORTHO05D003864 8.9e-17 91.7 243 30.5
Prupe.8G246900 Prunus persica HOM05D003358 ORTHO05D003864 8.9e-17 91.7 233 32.6
AagrBONN_evm.TU.Sc2ySwM_368.2570 Anthoceros agrestis HOM05D003358 ORTHO05D003864 1.2e-16 91.3 247 30.4
QL12p022545 Quercus lobata HOM05D003358 ORTHO05D003864 1.2e-16 91.3 242 30.6
CDE07G0407 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 2.0e-16 90.5 246 30.9
Pp3c22_7850 Physcomitrium patens HOM05D003358 ORTHO05D003864 2.0e-16 90.5 245 30.6
TPR.G13403 Trifolium pratense HOM05D003358 ORTHO05D003864 2.6e-16 90.1 212 32.5
MD11G1291200 Malus domestica HOM05D003358 ORTHO05D003864 3.4e-16 89.7 233 30.9
Oeu001439.1 Olea europaea HOM05D003358 ORTHO05D003864 3.4e-16 89.7 234 30.8
vmacro02543 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 3.4e-16 89.7 245 29.8
Cc01_g19840 Coffea canephora HOM05D003358 ORTHO05D003864 4.4e-16 89.4 237 32.9
Glyma.02G149800 Glycine max HOM05D003358 ORTHO05D003864 4.4e-16 89.4 242 31.0
Nitab4.5_0007767g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 4.4e-16 89.4 233 30.5
Hund05356 Selenicereus undatus HOM05D003358 ORTHO05D003864 4.4e-16 89.4 237 32.1
C03p05710 Brassica napus HOM05D003358 ORTHO05D003864 5.8e-16 89.0 195 34.9
ClCG09G006810 Citrullus lanatus HOM05D003358 ORTHO05D003864 5.8e-16 89.0 232 31.9
Glyma.10G024100 Glycine max HOM05D003358 ORTHO05D003864 5.8e-16 89.0 242 31.0
VMungo0720G0236 Vigna mungo HOM05D003358 ORTHO05D003864 5.8e-16 89.0 242 31.0
CDE05G1806 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 7.5e-16 88.6 237 30.8
PSO170G4489 Papaver somniferum HOM05D003358 ORTHO05D003864 7.5e-16 88.6 237 31.2
PSO407G0137 Papaver somniferum HOM05D003358 ORTHO05D003864 7.5e-16 88.6 237 31.2
Phvul.007G169100 Phaseolus vulgaris HOM05D003358 ORTHO05D003864 7.5e-16 88.6 233 30.9
MSTRG.21581 Avicennia marina HOM05D003358 ORTHO05D003864 9.8e-16 88.2 233 30.0
HanXRQChr10g0282971 Helianthus annuus HOM05D003358 ORTHO05D003864 9.8e-16 88.2 237 30.8
Os07g0647800 Oryza sativa ssp. japonica HOM05D003358 ORTHO05D003864 9.8e-16 88.2 243 30.0
SGA_v2.0_scaffold1G00442 Striga asiatica HOM05D003358 ORTHO05D003864 9.8e-16 88.2 234 28.6
BolC8t49311H Brassica oleracea HOM05D003358 ORTHO05D003864 1.3e-15 87.8 231 32.0
CANSAT25G0133 Cannabis sativa HOM05D003358 ORTHO05D003864 1.3e-15 87.8 235 31.5
Nn4g26144 Nelumbo nucifera HOM05D003358 ORTHO05D003864 1.3e-15 87.8 237 32.1
HPP92_000042 Vanilla planifolia HOM05D003358 ORTHO05D003864 1.3e-15 87.8 233 27.5
Ca_10402_v3 Cicer arietinum L. HOM05D003358 ORTHO05D003864 1.7e-15 87.4 236 31.8
Lsat_1_v5_gn_9_4540 Lactuca sativa HOM05D003358 ORTHO05D003864 2.2e-15 87.0 237 30.0
Lalb_Chr06g0163131 Lupinus albus HOM05D003358 ORTHO05D003864 2.2e-15 87.0 242 30.2
AT1G59560 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 2.9e-15 86.7 236 32.2
arahy.Tifrunner.gnm1.ann1.KX9J6A Arachis hypogaea HOM05D003358 ORTHO05D003864 3.7e-15 86.3 233 30.5
arahy.Tifrunner.gnm1.ann1.N9ZP1U Arachis hypogaea HOM05D003358 ORTHO05D003864 3.7e-15 86.3 233 30.5
BolC8t49309H Brassica oleracea HOM05D003358 ORTHO05D003864 3.7e-15 86.3 231 31.6
Hma1.2p1_0257F.1_g103860 Hydrangea macrophylla HOM05D003358 ORTHO05D003864 3.7e-15 86.3 234 30.3
Lj5g0011221 Lotus japonicus HOM05D003358 ORTHO05D003864 3.7e-15 86.3 242 30.2
DCAR_012453 Daucus carota HOM05D003358 ORTHO05D003864 4.9e-15 85.9 214 31.8
CAN.G1682.14 Capsicum annuum HOM05D003358 ORTHO05D003864 6.4e-15 85.5 233 31.8
ECA247G2569 Erigeron canadensis HOM05D003358 ORTHO05D003864 6.4e-15 85.5 214 32.2
Zm00001eb110530 Zea mays HOM05D003358 ORTHO05D003864 6.4e-15 85.5 243 29.2
Psat6g168920 Pisum sativum HOM05D003358 ORTHO05D003864 1.1e-14 84.7 237 32.5
unitig_0.g80 Utricularia gibba HOM05D003358 ORTHO05D003864 1.4e-14 84.3 246 28.9
ATR0626G053 Amborella trichopoda HOM05D003358 ORTHO05D003864 1.9e-14 84.0 241 30.7
BraA04t15751Z Brassica rapa HOM05D003358 ORTHO05D003864 3.2e-14 83.2 193 32.6
CSS0028362 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 3.2e-14 83.2 178 32.6
Ciclev10020957m.g Citrus clementina HOM05D003358 ORTHO05D003864 3.2e-14 83.2 234 29.1
BcaC02g10340 Brassica carinata HOM05D003358 ORTHO05D003864 4.1e-14 82.8 242 29.3
Medtr1g089900 Medicago truncatula HOM05D003358 ORTHO05D003864 4.1e-14 82.8 243 32.9
Atru.chr9.1958 Acer truncatum HOM05D003358 ORTHO05D003864 5.4e-14 82.4 192 31.2
TPR.G13299 Trifolium pratense HOM05D003358 ORTHO05D003864 5.4e-14 82.4 236 29.7
A09p54880 Brassica napus HOM05D003358 ORTHO05D003864 9.2e-14 81.6 162 33.3
Medtr1g089910 Medicago truncatula HOM05D003358 ORTHO05D003864 9.2e-14 81.6 240 31.2
TPR.G13400 Trifolium pratense HOM05D003358 ORTHO05D003864 9.2e-14 81.6 237 32.1
BcaB03g13087 Brassica carinata HOM05D003358 ORTHO05D003864 1.2e-13 81.3 232 31.5
BcaC07g42712 Brassica carinata HOM05D003358 ORTHO05D003864 1.2e-13 81.3 238 28.6
Cpa.g.sc9.121 Carica papaya HOM05D003358 ORTHO05D003864 1.2e-13 81.3 178 33.7
A04p00330 Brassica napus HOM05D003358 ORTHO05D003864 1.6e-13 80.9 193 32.1
A08p31850 Brassica napus HOM05D003358 ORTHO05D003864 1.6e-13 80.9 223 31.4
Duzib138G0559 Durio zibethinus HOM05D003358 ORTHO05D003864 1.6e-13 80.9 245 31.4
Medtr7g094290 Medicago truncatula HOM05D003358 ORTHO05D003864 2.1e-13 80.5 212 32.5
Zm00001eb329440 Zea mays HOM05D003358 ORTHO05D003864 2.7e-13 80.1 243 30.0
C08p16850 Brassica napus HOM05D003358 ORTHO05D003864 3.5e-13 79.7 174 33.3
BolC3t13084H Brassica oleracea HOM05D003358 ORTHO05D003864 4.6e-13 79.3 161 36.0
Medtr1g089940 Medicago truncatula HOM05D003358 ORTHO05D003864 6.0e-13 79.0 251 29.5
Pp3c19_9460 Physcomitrium patens HOM05D003358 ORTHO05D003864 1.0e-12 78.2 247 27.5
C04p30150 Brassica napus HOM05D003358 ORTHO05D003864 2.3e-12 77.0 243 28.8
Gohir.D11G124766 Gossypium hirsutum HOM05D003358 ORTHO05D003864 3.0e-12 76.6 180 32.8
Prupe.8G246300 Prunus persica HOM05D003358 ORTHO05D003864 3.9e-12 76.3 264 29.5
Rhsim01G0276900 Rhododendron simsii HOM05D003358 ORTHO05D003864 3.9e-12 76.3 234 27.8
BolC4t24547H Brassica oleracea HOM05D003358 ORTHO05D003864 5.1e-12 75.9 246 27.2
Rhsim13G0022000 Rhododendron simsii HOM05D003358 ORTHO05D003864 5.1e-12 75.9 248 28.2
Thhalv10024073m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 6.6e-12 75.5 258 28.7
Sed0022837 Sechium edule HOM05D003358 ORTHO05D003864 6.6e-12 75.5 197 32.0
BolC8t49305H Brassica oleracea HOM05D003358 ORTHO05D003864 8.6e-12 75.1 245 30.6
Migut.N02149 Erythranthe guttata HOM05D003358 ORTHO05D003864 1.1e-11 74.7 238 29.0
A09p62040 Brassica napus HOM05D011503 ORTHO05D013743 1.5e-11 74.3 225 29.8
Nitab4.5_0002093g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 1.9e-11 73.9 203 31.5
Medtr1g089920 Medicago truncatula HOM05D003358 ORTHO05D003864 2.5e-11 73.6 273 28.2
SEGI_02468 Sequoiadendron giganteum HOM05D003358 ORTHO05D003864 2.5e-11 73.6 249 26.5
vmacro14942 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 3.3e-11 73.2 249 27.7
BcaC07g38753 Brassica carinata HOM05D003358 ORTHO05D003864 1.2e-10 71.2 245 30.6
C08p16840 Brassica napus HOM05D003358 ORTHO05D003864 1.2e-10 71.2 245 30.6
Medtr1g089960 Medicago truncatula HOM05D003358 ORTHO05D003864 1.6e-10 70.9 255 28.6
Duzib211G0202 Durio zibethinus HOM05D003358 ORTHO05D003864 6.2e-10 68.9 242 28.5
Carub.0002s0588 Capsella rubella HOM05D003358 ORTHO05D003864 8.1e-10 68.6 132 36.4
FAN27G2094 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.4e-09 67.8 143 33.6
TAR362G0768 Trochodendron aralioides HOM05D003358 ORTHO05D003864 1.4e-09 67.8 131 34.4
BcaC07g38754 Brassica carinata HOM05D003358 ORTHO05D003864 2.3e-09 67.0 226 29.6
Migut.N02146 Erythranthe guttata HOM05D003358 ORTHO05D003864 2.3e-09 67.0 226 29.2
Gorai.007G133700 Gossypium raimondii HOM05D003358 ORTHO05D003864 2.3e-09 67.0 217 30.9
MD11G1291000 Malus domestica HOM05D003358 ORTHO05D003864 2.3e-09 67.0 217 30.4
Migut.N02147 Erythranthe guttata HOM05D003358 ORTHO05D003864 3.1e-09 66.6 244 28.3
Prupe.8G246200 Prunus persica HOM05D003358 ORTHO05D003864 6.8e-09 65.5 174 30.5
A08p31860 Brassica napus HOM05D003358 ORTHO05D003864 7.6e-08 62.0 151 33.1
BraA09t41567Z Brassica rapa HOM05D011503 ORTHO05D013743 9.9e-08 61.6 87 41.4
DCAR_018399 Daucus carota HOM05D000027 ORTHO05D003864 3.7e-07 59.7 99 33.3
Atru.chr5.1348 Acer truncatum HOM05D003358 ORTHO05D003864 6.4e-07 58.9 92 41.3
C03p05680 Brassica napus HOM05D026960 ORTHO05D031882 8.3e-07 58.5 204 29.4
TPR.G36026 Trifolium pratense HOM05D003358 ORTHO05D003864 1.9e-06 57.4 107 38.3


User provided reference genes

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