Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 2.3e-118 429.1 245 100.0
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 2.3e-118 429.1 245 100.0
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 1.3e-68 263.8 268 67.2
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 2.0e-66 256.5 260 67.3
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 4.5e-66 255.4 276 63.8
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 1.3e-65 253.8 260 67.3
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 1.3e-65 253.8 260 67.3
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 4.2e-64 248.8 268 64.2
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 5.7e-61 238.4 271 60.1
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 1.8e-59 233.4 266 61.3
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 4.1e-59 232.3 279 59.9
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 4.1e-59 232.3 268 62.3
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 1.6e-58 230.3 266 61.7
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 1.9e-56 223.4 271 59.4
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 3.2e-56 222.6 281 52.7
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 7.2e-56 221.5 280 56.8
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 5.2e-54 215.3 264 57.6
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 4.4e-53 212.2 268 56.7
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 6.3e-52 208.4 267 56.6
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.1e-51 207.6 276 54.7
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 1.4e-51 207.2 280 54.6
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 4.1e-51 205.7 276 55.1
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 4.1e-51 205.7 276 55.1
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 3.5e-50 202.6 283 53.7
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 3.5e-50 202.6 284 53.2
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.3e-49 200.7 285 51.2
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.3e-49 200.7 273 54.9
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 1.3e-49 200.7 270 54.1
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 2.3e-49 199.9 266 53.0
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 5.0e-49 198.7 269 52.4
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 1.1e-48 197.6 271 53.1
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.1e-48 197.6 276 54.7
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 1.5e-48 197.2 276 54.7
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.5e-48 197.2 275 53.8
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 1.9e-48 196.8 269 50.6
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 2.5e-48 196.4 269 52.0
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 2.5e-48 196.4 280 48.9
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 3.3e-48 196.1 276 54.0
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 4.3e-48 195.7 271 52.8
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 4.3e-48 195.7 268 55.2
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.6e-48 195.3 273 52.7
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 7.3e-48 194.9 281 48.8
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 7.3e-48 194.9 275 53.5
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 9.5e-48 194.5 275 52.7
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 9.5e-48 194.5 276 54.3
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 1.2e-47 194.1 257 55.3
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 1.2e-47 194.1 277 50.2
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 1.6e-47 193.7 188 67.0
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 1.6e-47 193.7 275 53.5
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 1.6e-47 193.7 261 54.8
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 1.6e-47 193.7 266 53.8
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 2.1e-47 193.4 257 52.1
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 2.1e-47 193.4 267 50.9
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 2.8e-47 193.0 273 51.6
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 3.6e-47 192.6 271 52.4
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 4.7e-47 192.2 275 52.7
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 6.1e-47 191.8 281 53.7
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 8.0e-47 191.4 275 51.3
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.4e-46 190.7 262 54.2
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 1.8e-46 190.3 277 50.9
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 2.3e-46 189.9 287 51.9
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 4.0e-46 189.1 269 52.8
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 8.9e-46 188.0 281 49.5
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 8.9e-46 188.0 281 50.9
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 8.9e-46 188.0 281 52.0
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 1.5e-45 187.2 266 53.8
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 1.5e-45 187.2 266 53.8
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 1.5e-45 187.2 266 53.8
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 2.0e-45 186.8 261 53.6
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 3.4e-45 186.0 261 53.3
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 4.4e-45 185.7 266 53.0
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 4.4e-45 185.7 281 53.0
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 5.7e-45 185.3 266 53.4
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 5.7e-45 185.3 257 53.7
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 1.3e-44 184.1 258 53.5
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.7e-44 183.7 273 52.7
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 1.7e-44 183.7 252 54.0
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 2.9e-44 183.0 270 52.6
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 2.9e-44 183.0 270 52.6
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 6.4e-44 181.8 267 49.1
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 8.3e-44 181.4 268 52.6
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 8.3e-44 181.4 257 53.7
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 8.3e-44 181.4 273 52.4
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 1.1e-43 181.0 270 52.6
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.4e-43 180.6 262 52.7
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.4e-43 179.9 264 51.5
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.4e-43 179.9 276 51.4
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 3.2e-43 179.5 294 46.9
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.1e-43 179.1 271 52.4
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.1e-43 179.1 276 51.4
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 4.1e-43 179.1 268 51.9
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 5.4e-43 178.7 266 48.9
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 5.4e-43 178.7 266 52.6
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 9.2e-43 177.9 264 48.5
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 2.0e-42 176.8 295 46.4
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 2.0e-42 176.8 264 51.1
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 3.5e-42 176.0 213 57.3
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.8e-42 174.9 266 48.1
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 1.0e-41 174.5 275 49.5
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.3e-41 174.1 266 48.5
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 2.3e-41 173.3 285 48.4
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 3.0e-41 172.9 245 53.1
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 6.6e-41 171.8 281 49.5
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 6.6e-41 171.8 274 50.7
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.6e-41 171.4 267 47.6
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 1.9e-40 170.2 281 49.5
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 1.9e-40 170.2 291 47.4
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 2.5e-40 169.9 274 49.6
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.3e-40 169.5 256 47.3
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 1.6e-39 167.2 258 48.4
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 2.1e-39 166.8 261 46.4
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 1.8e-38 163.7 265 47.2
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.8e-38 163.7 261 48.7
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 4.0e-38 162.5 265 49.8
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 1.2e-37 161.0 268 47.4
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 1.5e-37 160.6 265 47.2
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 3.4e-37 159.5 261 47.1
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 3.4e-37 159.5 278 45.7
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 5.8e-37 158.7 270 45.2
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 3.7e-36 156.0 190 52.1
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 6.4e-36 155.2 286 43.7
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 3.2e-35 152.9 269 46.5
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 2.7e-34 149.8 270 45.6
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 4.6e-34 149.1 300 45.0
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 7.8e-34 148.3 262 47.3
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.7e-33 147.1 239 50.6
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 2.5e-32 143.3 249 45.0
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 1.1e-30 137.9 196 45.9
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 8.9e-30 134.8 141 66.0
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 2.6e-29 133.3 189 44.4
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.6e-26 124.0 271 42.8
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 7.8e-26 121.7 270 36.7
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 3.9e-25 119.4 276 40.9
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 6.6e-25 118.6 100 65.0
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.6e-25 118.2 234 44.4
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 7.3e-24 115.2 270 37.0
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 3.6e-23 112.8 283 40.6
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 8.1e-23 111.7 231 40.7
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 2.6e-21 106.7 201 38.8
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.4e-21 105.9 163 44.8
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 3.8e-20 102.8 83 67.5
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 5.6e-16 89.0 272 33.8
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 9.6e-16 88.2 204 39.7
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.2e-15 87.8 80 65.0
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 2.8e-15 86.7 93 60.2
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 1.8e-14 84.0 283 32.2
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 5.4e-11 72.4 249 32.9
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 1.5e-08 64.3 95 55.8
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 3.6e-07 59.7 95 57.9
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.4e-06 57.8 284 29.6
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 6.9e-06 55.5 237 25.7


User provided reference genes

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