Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 1.4e-162 576.2 288 100.0
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 7.0e-159 563.9 285 98.6
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 1.1e-135 486.9 285 86.3
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 3.2e-135 485.3 285 86.0
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 3.5e-134 481.9 285 84.9
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 4.6e-134 481.5 285 85.3
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 4.6e-134 481.5 285 85.3
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 7.8e-134 480.7 285 84.6
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 1.0e-133 480.3 285 85.3
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 1.3e-133 479.9 285 84.6
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 1.3e-133 479.9 285 85.3
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 1.7e-133 479.6 285 83.9
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 3.0e-133 478.8 285 84.6
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 3.9e-133 478.4 285 85.3
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 3.9e-133 478.4 285 85.3
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 2.1e-131 472.6 285 83.9
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.8e-130 469.5 285 82.8
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 2.9e-128 462.2 285 81.4
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 3.7e-128 461.8 284 81.7
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 4.9e-128 461.5 285 81.1
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 6.4e-128 461.1 285 81.4
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 1.9e-127 459.5 285 81.1
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 5.4e-127 458.0 285 80.7
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 7.1e-127 457.6 285 81.1
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 7.1e-127 457.6 285 80.7
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 9.2e-127 457.2 285 80.4
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 1.2e-126 456.8 285 80.7
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 1.6e-126 456.4 285 81.4
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 1.6e-126 456.4 285 80.4
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 2.1e-126 456.1 285 80.0
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 2.1e-126 456.1 285 80.0
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.1e-126 456.1 285 80.0
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.1e-126 456.1 285 80.4
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 2.7e-126 455.7 285 80.7
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 2.7e-126 455.7 285 80.4
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 3.5e-126 455.3 285 80.0
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 3.5e-126 455.3 285 80.7
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 3.5e-126 455.3 285 80.0
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 4.6e-126 454.9 285 80.0
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 1.0e-125 453.8 285 80.0
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.0e-125 453.8 285 79.6
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 1.3e-125 453.4 284 80.3
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 1.3e-125 453.4 285 79.6
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 1.7e-125 453.0 285 79.3
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 3.0e-125 452.2 285 80.4
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 3.0e-125 452.2 285 79.6
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 3.0e-125 452.2 285 78.9
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 3.9e-125 451.8 285 79.6
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 6.6e-125 451.1 285 80.0
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 8.6e-125 450.7 285 79.3
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 8.6e-125 450.7 285 80.4
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 8.6e-125 450.7 285 79.3
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.1e-124 450.3 285 81.4
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.1e-124 450.3 285 81.4
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.1e-124 450.3 285 78.6
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 1.9e-124 449.5 285 79.3
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 1.9e-124 449.5 285 80.0
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 1.9e-124 449.5 285 79.3
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 2.5e-124 449.1 285 79.3
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 2.5e-124 449.1 285 79.3
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 2.5e-124 449.1 285 78.2
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 3.3e-124 448.7 285 79.3
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 3.3e-124 448.7 285 78.2
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 5.6e-124 448.0 285 78.9
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 5.6e-124 448.0 285 79.3
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 5.6e-124 448.0 285 78.9
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 7.3e-124 447.6 285 80.0
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 7.3e-124 447.6 285 78.9
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 7.3e-124 447.6 285 80.0
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 1.2e-123 446.8 285 78.9
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.2e-123 446.8 285 78.9
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.1e-123 446.0 285 80.0
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 2.1e-123 446.0 285 77.9
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 2.1e-123 446.0 286 79.0
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 2.8e-123 445.7 285 78.9
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 3.6e-123 445.3 285 78.2
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 6.2e-123 444.5 285 78.9
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 8.1e-123 444.1 286 78.7
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 1.1e-122 443.7 286 78.3
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 1.8e-122 443.0 285 78.2
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 2.3e-122 442.6 285 79.3
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 2.3e-122 442.6 324 71.3
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 2.3e-122 442.6 286 78.3
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 2.3e-122 442.6 285 78.6
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 3.1e-122 442.2 286 78.3
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 3.1e-122 442.2 284 77.5
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 3.1e-122 442.2 285 77.9
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 4.0e-122 441.8 285 79.3
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 4.0e-122 441.8 285 78.2
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 5.2e-122 441.4 285 77.2
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 6.8e-122 441.0 285 78.9
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 6.8e-122 441.0 285 77.5
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 8.9e-122 440.7 285 77.2
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 8.9e-122 440.7 285 77.2
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 8.9e-122 440.7 285 77.2
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 8.9e-122 440.7 285 77.9
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.2e-121 440.3 285 78.9
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 3.4e-121 438.7 285 77.5
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 1.3e-120 436.8 285 76.5
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.3e-120 436.8 285 76.1
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 1.3e-120 436.8 285 77.2
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 1.7e-120 436.4 285 77.9
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.2e-120 436.0 285 76.5
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 4.9e-120 434.9 285 77.2
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 6.4e-120 434.5 285 77.2
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 8.4e-120 434.1 284 76.4
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 8.4e-120 434.1 284 76.4
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 1.1e-119 433.7 285 76.1
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 1.9e-119 433.0 285 75.4
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 7.1e-119 431.0 286 76.2
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 2.1e-118 429.5 285 75.1
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 2.7e-118 429.1 286 75.5
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 1.3e-117 426.8 287 75.3
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 3.0e-117 425.6 286 74.8
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 2.5e-116 422.5 285 72.6
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 4.3e-116 421.8 286 74.8
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 2.8e-115 419.1 286 74.1
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 8.1e-115 417.5 285 73.3
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 5.2e-114 414.8 285 71.9
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.2e-113 413.7 285 70.9
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 2.9e-112 409.1 285 69.8
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 2.9e-112 409.1 284 70.1
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.1e-111 407.1 285 69.5
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.4e-111 406.8 285 69.8
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 4.6e-110 401.7 285 68.8
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.3e-104 383.6 287 66.9
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 2.9e-104 382.5 287 66.9
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 2.1e-102 376.3 285 65.3
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.0e-101 374.0 285 64.2
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 6.9e-98 361.3 285 62.1
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.4e-95 353.6 284 68.3
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 8.7e-93 344.4 228 76.3
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 1.1e-92 344.0 286 60.8
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 5.3e-90 335.1 297 57.6
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 6.7e-85 318.2 285 59.6
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 3.3e-68 262.7 289 46.4
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 2.2e-56 223.4 295 42.4
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 1.6e-54 217.2 288 44.4
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 2.4e-50 203.4 114 86.0
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 2.0e-49 200.3 113 85.0
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 2.7e-49 199.9 283 38.5
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 1.2e-46 191.0 114 82.5
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 4.9e-35 152.5 216 45.4
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 2.4e-34 150.2 103 75.7
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 3.1e-34 149.8 216 44.4
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 1.7e-11 74.3 117 37.6


User provided reference genes

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