Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p57360 Brassica napus HOM05D001129 ORTHO05D017518 2.5e-289 998.0 487 100.0
BcaC03g17727 Brassica carinata HOM05D001129 ORTHO05D017518 3.7e-277 957.6 504 93.8
A02p38070 Brassica napus HOM05D001129 ORTHO05D017518 3.0e-186 655.6 361 90.6
A02p38190 Brassica napus HOM05D001129 ORTHO05D017518 4.4e-105 386.0 550 39.5
C06p09320 Brassica napus HOM05D001129 ORTHO05D017518 5.7e-52 209.5 200 57.0
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 5.1e-45 186.4 518 26.6
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 5.1e-45 186.4 518 26.8
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 3.3e-44 183.7 520 27.1
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 2.8e-43 180.6 520 26.7
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 3.7e-43 180.3 519 26.0
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 4.8e-43 179.9 518 25.9
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 1.1e-42 178.7 518 25.9
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 1.4e-42 178.3 518 25.9
Hund05051 Selenicereus undatus HOM05D001129 ORTHO05D003814 2.4e-42 177.6 518 27.2
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 4.1e-42 176.8 518 25.9
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 5.3e-42 176.4 522 24.7
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 6.9e-42 176.0 519 27.0
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 1.2e-41 175.3 519 26.4
vmacro02881 Vaccinium macrocarpon HOM05D001129 ORTHO05D003814 1.2e-41 175.3 520 26.5
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 1.5e-41 174.9 524 26.0
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 5.9e-41 172.9 521 26.5
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 7.7e-41 172.6 524 25.4
FAN16G0023 Fragaria x ananassa HOM05D001129 ORTHO05D003814 7.7e-41 172.6 524 25.2
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 7.7e-41 172.6 523 25.8
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 7.7e-41 172.6 531 26.9
Lsat_1_v5_gn_9_13880 Lactuca sativa HOM05D001129 ORTHO05D003814 1.0e-40 172.2 528 25.0
PGR102G0317 Punica granatum HOM05D001129 ORTHO05D003814 1.0e-40 172.2 526 25.9
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 1.3e-40 171.8 520 24.8
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 1.3e-40 171.8 521 24.2
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 1.7e-40 171.4 518 24.9
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 1.7e-40 171.4 518 25.3
Os03g0336300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003814 1.7e-40 171.4 514 25.3
FvH4_3g40361 Fragaria vesca HOM05D001129 ORTHO05D003814 2.2e-40 171.0 523 25.8
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 2.9e-40 170.6 519 26.8
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 2.9e-40 170.6 518 25.9
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 3.8e-40 170.2 519 27.4
FAN11G2940 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.8e-40 170.2 525 25.9
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 6.5e-40 169.5 524 25.0
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 6.5e-40 169.5 529 25.0
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 8.5e-40 169.1 519 25.8
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 8.5e-40 169.1 524 24.4
RcHm_v2.0_Chr5g0072781 Rosa chinensis HOM05D001129 ORTHO05D003814 8.5e-40 169.1 519 25.6
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 1.1e-39 168.7 518 25.5
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 1.4e-39 168.3 525 24.2
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 1.4e-39 168.3 519 24.5
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 1.4e-39 168.3 518 26.8
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 3.2e-39 167.2 523 24.5
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 3.2e-39 167.2 524 26.0
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 3.2e-39 167.2 517 27.3
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 4.2e-39 166.8 519 25.8
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 5.5e-39 166.4 517 26.3
BcaB04g19613 Brassica carinata HOM05D001129 ORTHO05D031382 7.2e-39 166.0 522 25.7
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 9.4e-39 165.6 519 26.6
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 9.4e-39 165.6 518 25.9
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 9.4e-39 165.6 525 25.5
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 1.2e-38 165.2 542 24.7
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 1.2e-38 165.2 523 24.5
C08p50940 Brassica napus HOM05D001129 ORTHO05D003814 1.2e-38 165.2 528 24.8
BolC8t52622H Brassica oleracea HOM05D001129 ORTHO05D003814 1.2e-38 165.2 528 24.8
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 1.2e-38 165.2 525 25.9
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 1.2e-38 165.2 519 27.0
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 1.6e-38 164.9 519 26.2
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 2.1e-38 164.5 529 24.6
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 2.1e-38 164.5 529 24.6
Peaxi162Scf00960g00120 Petunia axillaris HOM05D001129 ORTHO05D003814 2.1e-38 164.5 515 25.6
ATR1127G095 Amborella trichopoda HOM05D001129 ORTHO05D003814 2.7e-38 164.1 518 26.3
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 2.7e-38 164.1 523 24.5
Psat5g149400 Pisum sativum HOM05D001129 ORTHO05D003814 2.7e-38 164.1 527 24.7
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 4.7e-38 163.3 518 25.5
FvH4_5g00310 Fragaria vesca HOM05D001129 ORTHO05D003814 6.1e-38 162.9 520 24.8
RcHm_v2.0_Chr7g0202261 Rosa chinensis HOM05D001129 ORTHO05D003814 6.1e-38 162.9 518 24.3
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 7.9e-38 162.5 518 26.4
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 7.9e-38 162.5 516 25.8
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 7.9e-38 162.5 519 25.4
Nitab4.5_0002620g0020 Nicotiana tabacum HOM05D001129 ORTHO05D003814 1.0e-37 162.2 517 25.5
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 1.4e-37 161.8 517 25.7
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 1.8e-37 161.4 520 25.2
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 1.8e-37 161.4 519 25.6
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 2.3e-37 161.0 518 26.3
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 2.3e-37 161.0 519 27.0
Lj4g0007497 Lotus japonicus HOM05D001129 ORTHO05D003814 2.3e-37 161.0 519 24.1
Gohir.D03G145400 Gossypium hirsutum HOM05D001129 ORTHO05D003814 3.0e-37 160.6 455 26.2
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 3.9e-37 160.2 519 25.8
Solyc02g043860.3 Solanum lycopersicum HOM05D001129 ORTHO05D003814 3.9e-37 160.2 521 25.5
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 5.1e-37 159.8 517 24.4
RcHm_v2.0_Chr5g0072931 Rosa chinensis HOM05D001129 ORTHO05D003814 5.1e-37 159.8 520 24.2
RcHm_v2.0_Chr5g0073041 Rosa chinensis HOM05D001129 ORTHO05D003814 5.1e-37 159.8 517 25.5
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 8.8e-37 159.1 518 25.3
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 8.8e-37 159.1 518 25.3
FAN21G2900 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.5e-36 158.3 533 26.1
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 1.5e-36 158.3 520 26.0
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 2.0e-36 157.9 519 25.6
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 2.6e-36 157.5 520 25.0
CDE06G0445 Ceratophyllum demersum HOM05D001129 ORTHO05D000075 4.4e-36 156.8 522 24.7
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 4.4e-36 156.8 527 23.5
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 5.7e-36 156.4 517 24.4
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 5.7e-36 156.4 517 24.8
FAN11G2052 Fragaria x ananassa HOM05D001129 ORTHO05D003814 7.4e-36 156.0 535 25.6
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 9.7e-36 155.6 459 26.1
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 2.8e-35 154.1 529 25.0
FAN08G0077 Fragaria x ananassa HOM05D001129 ORTHO05D003814 6.3e-35 152.9 536 23.9
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 6.3e-35 152.9 514 24.1
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 8.2e-35 152.5 520 25.2
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 8.2e-35 152.5 533 25.0
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 1.8e-34 151.4 519 23.1
Mapoly0029s0118 Marchantia polymorpha HOM05D001129 ORTHO05D003814 4.1e-34 150.2 526 24.9
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 5.3e-34 149.8 520 24.0
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 6.9e-34 149.4 519 23.1
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 1.5e-33 148.3 552 24.1
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 4.5e-33 146.7 523 24.9
FAN18G3567 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.2e-32 144.4 548 23.4
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 2.2e-32 144.4 523 25.6
Pp3c5_6610 Physcomitrium patens HOM05D001129 ORTHO05D003814 3.8e-32 143.7 518 23.6
Zm00001eb395090 Zea mays HOM05D001129 ORTHO05D003814 4.2e-31 140.2 518 23.6
Aqoxy5G03056 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 7.2e-31 139.4 511 24.1
ClCG02G019050 Citrullus lanatus HOM05D001129 ORTHO05D003814 6.1e-30 136.3 407 24.8
Actinidia11621 Actinidia chinensis HOM05D001129 ORTHO05D003814 5.7e-28 129.8 382 25.9
Cpa.g.sc2.305 Carica papaya HOM05D001129 ORTHO05D003814 7.4e-28 129.4 345 26.7
Haze_24463 Corylus avellana HOM05D001129 ORTHO05D003814 7.4e-28 129.4 533 24.8
FvH4_3g40370 Fragaria vesca HOM05D001129 ORTHO05D003814 1.3e-27 128.6 517 22.8
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.8e-27 127.5 507 22.7
AL2G24780 Arabidopsis lyrata HOM05D001129 ORTHO05D026758 1.1e-26 125.6 525 24.0
FAN01G1484 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.0e-25 121.3 463 22.9
BolC2t11804H Brassica oleracea HOM05D001129 ORTHO05D017518 2.6e-25 120.9 90 64.4
AagrBONN_evm.TU.Sc2ySwM_362.374 Anthoceros agrestis HOM05D001129 ORTHO05D003814 4.5e-25 120.2 553 21.5
DCAR_004800 Daucus carota HOM05D001129 ORTHO05D003814 5.9e-25 119.8 394 22.6
SMO239G0088 Selaginella moellendorffii HOM05D001129 ORTHO05D003814 5.9e-25 119.8 521 22.6
FAN18G1906 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.8e-24 117.1 418 23.0
C01p43680 Brassica napus HOM05D001129 ORTHO05D018671 1.5e-23 115.2 282 27.0
BolC1t04327H Brassica oleracea HOM05D001129 ORTHO05D018671 1.5e-23 115.2 282 27.0
RcHm_v2.0_Chr5g0073071 Rosa chinensis HOM05D001129 ORTHO05D003814 3.6e-22 110.5 554 20.9
RcHm_v2.0_Chr5g0072951 Rosa chinensis HOM05D001129 ORTHO05D003814 4.4e-20 103.6 344 26.2
TPR.G27380 Trifolium pratense HOM05D001129 ORTHO05D003814 5.7e-20 103.2 271 25.1
BcaC09g48997 Brassica carinata HOM05D001129 ORTHO05D018671 1.7e-19 101.7 272 26.1
arahy.Tifrunner.gnm1.ann1.MP07WF Arachis hypogaea HOM05D001129 ORTHO05D003814 2.2e-19 101.3 481 25.2
CBR_g45246 Chara braunii HOM05D001129 ORTHO05D003814 2.4e-18 97.8 339 23.3
FAN13G1906 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.4e-18 97.8 383 21.7
unitig_747.g21448 Utricularia gibba HOM05D001129 ORTHO05D003814 7.0e-18 96.3 376 23.4
BraA02t08792Z Brassica rapa HOM05D001129 ORTHO05D017518 8.5e-16 89.4 97 47.4
Psat2g172400 Pisum sativum HOM05D001129 ORTHO05D003814 9.4e-15 85.9 157 25.5
AagrBONN_evm.TU.Sc2ySwM_228.1876 Anthoceros agrestis HOM05D001129 ORTHO05D003157 1.5e-12 78.6 531 20.7
SEGI_18924 Sequoiadendron giganteum HOM05D001129 ORTHO05D003814 4.4e-12 77.0 288 22.2
AT5G01440 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 1.7e-11 75.1 120 36.7
Gohir.A01G131400 Gossypium hirsutum HOM05D001129 ORTHO05D003157 3.7e-11 73.9 406 21.4
Duzib093G0335 Durio zibethinus HOM05D001129 ORTHO05D003157 9.1e-10 69.3 408 21.1
C06p24520 Brassica napus HOM05D001129 ORTHO05D003157 1.2e-09 68.9 404 21.8
BolC6t37600H Brassica oleracea HOM05D001129 ORTHO05D003157 1.2e-09 68.9 404 21.8
Thecc.05G154200 Theobroma cacao HOM05D001129 ORTHO05D003157 3.5e-09 67.4 405 20.7
FAN06G3753 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.3e-08 65.5 272 20.2
CiPaw.13G064200 Carya illinoinensis HOM05D001129 ORTHO05D003814 2.9e-08 64.3 152 30.9
TPR.G27384 Trifolium pratense HOM05D001129 ORTHO05D003814 5.0e-08 63.5 154 29.9
Duzib093G1038 Durio zibethinus HOM05D001129 ORTHO05D003157 2.5e-07 61.2 406 19.7
Nitab4.5_0000733g0050 Nicotiana tabacum HOM05D001129 ORTHO05D003157 7.2e-07 59.7 405 20.0
Nitab4.5_0005611g0040 Nicotiana tabacum HOM05D001129 ORTHO05D003157 1.2e-06 58.9 310 20.6
Peaxi162Scf00493g00005 Petunia axillaris HOM05D001129 ORTHO05D003157 4.7e-06 57.0 415 19.5


User provided reference genes

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