Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 5.8e-294 1013.4 503 100.0
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 1.1e-287 992.6 503 98.6
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 5.1e-282 973.8 497 97.6
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 1.9e-281 971.8 503 96.4
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 1.0e-277 959.5 496 95.8
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 6.5e-269 930.2 496 92.5
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 1.1e-268 929.5 497 92.2
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 1.2e-267 926.0 497 92.0
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 1.2e-267 926.0 497 92.0
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 2.7e-267 924.9 496 92.3
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 2.7e-267 924.9 497 92.0
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.3e-265 917.9 497 91.3
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.8e-263 912.1 497 90.7
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 2.6e-262 908.3 494 90.9
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 3.8e-261 904.4 492 90.9
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 3.6e-259 897.9 492 90.9
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.8e-258 895.6 491 90.0
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 2.8e-256 888.3 497 88.1
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 9.4e-252 873.2 448 96.9
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 6.1e-243 844.0 491 85.9
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 7.0e-239 830.5 491 83.5
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 2.0e-238 828.9 444 92.3
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 1.2e-235 819.7 484 83.1
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.2e-235 819.7 495 81.8
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 3.6e-235 818.1 489 80.8
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 1.0e-234 816.6 493 81.7
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 6.8e-234 813.9 487 81.5
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 6.8e-234 813.9 491 80.9
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 1.5e-233 812.8 490 81.2
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 2.0e-233 812.4 490 81.0
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 2.6e-233 812.0 488 80.9
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 4.4e-233 811.2 487 81.5
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 4.4e-233 811.2 490 81.4
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 7.5e-233 810.4 491 80.9
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 9.8e-233 810.1 488 81.1
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 1.3e-232 809.7 489 80.8
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.2e-232 808.9 490 81.2
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.2e-232 808.9 491 80.9
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 4.9e-232 807.7 490 80.0
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.1e-231 806.6 490 80.8
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 1.4e-231 806.2 490 81.0
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 1.4e-231 806.2 491 79.4
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.4e-231 806.2 488 80.7
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.4e-231 806.2 488 80.7
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 1.8e-231 805.8 489 80.6
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.8e-231 805.8 489 80.8
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 2.4e-231 805.4 488 79.3
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 5.4e-231 804.3 489 81.6
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 5.4e-231 804.3 487 80.1
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 9.2e-231 803.5 491 80.2
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 1.2e-230 803.1 485 81.0
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 4.5e-230 801.2 488 78.7
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 5.9e-230 800.8 498 78.5
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 5.9e-230 800.8 488 79.9
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 7.7e-230 800.4 489 79.3
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 7.7e-230 800.4 488 80.3
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.7e-229 799.3 490 80.0
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 1.7e-229 799.3 488 78.5
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 2.3e-229 798.9 489 80.0
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 2.9e-229 798.5 489 79.1
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 5.0e-229 797.7 490 79.8
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.6e-229 797.3 488 79.5
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.1e-228 796.6 492 79.7
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 1.5e-228 796.2 489 78.7
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 1.9e-228 795.8 489 79.1
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 1.9e-228 795.8 488 78.9
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 1.2e-227 793.1 524 76.0
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.2e-227 793.1 488 78.3
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 1.2e-227 793.1 490 79.2
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.6e-227 792.7 529 75.2
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 2.1e-227 792.3 488 79.7
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 2.8e-227 792.0 492 80.1
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 3.6e-227 791.6 488 78.7
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 3.6e-227 791.6 488 78.1
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 3.6e-227 791.6 491 79.4
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.7e-227 791.2 488 79.5
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 6.1e-227 790.8 495 79.4
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.4e-226 789.6 491 79.2
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 2.3e-226 788.9 488 79.5
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 6.8e-226 787.3 486 80.7
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 1.5e-225 786.2 492 78.3
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 2.0e-225 785.8 488 79.1
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 3.4e-225 785.0 491 78.6
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 4.4e-225 784.6 489 79.1
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 5.7e-225 784.3 491 77.4
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 1.3e-224 783.1 489 80.0
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 1.3e-224 783.1 491 79.2
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 3.7e-224 781.6 492 77.6
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 4.9e-224 781.2 488 78.9
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 8.3e-224 780.4 501 76.0
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 1.1e-223 780.0 489 78.5
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 1.8e-223 779.2 492 78.3
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 7.0e-223 777.3 488 77.9
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 9.2e-223 776.9 490 77.6
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 1.6e-222 776.2 499 75.8
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 4.6e-222 774.6 488 78.3
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.3e-221 773.1 474 79.5
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 1.3e-221 773.1 489 77.7
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 1.5e-220 769.6 488 77.5
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 5.6e-220 767.7 487 77.4
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 6.2e-219 764.2 492 77.2
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.2e-215 751.9 492 75.6
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 1.8e-210 736.1 518 71.8
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 3.1e-210 735.3 492 74.4
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 9.8e-209 730.3 485 74.6
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 2.9e-208 728.8 494 73.3
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 5.4e-207 724.5 443 80.1
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 1.3e-205 719.9 492 72.4
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 3.9e-205 718.4 445 79.6
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 4.3e-204 714.9 438 80.1
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 6.6e-197 691.0 495 68.9
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 6.2e-195 684.5 487 71.7
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 1.1e-194 683.7 440 77.3
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 2.6e-193 679.1 442 75.8
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 1.6e-187 659.8 384 84.1
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 4.6e-182 641.7 406 77.3
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 7.6e-177 624.4 489 67.5
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.3e-173 612.8 473 67.7
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 3.0e-173 612.5 515 61.6
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 1.1e-170 604.0 380 77.1
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 1.3e-168 597.0 487 64.1
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.5e-168 594.7 383 76.2
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 4.3e-164 582.0 384 75.3
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 1.4e-162 577.0 493 62.1
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 8.7e-157 557.8 477 63.7
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 7.7e-153 544.7 347 77.8
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 1.0e-149 534.3 383 71.3
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 2.0e-145 520.0 258 98.8
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 6.7e-141 505.0 533 50.1
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.6e-134 482.6 269 87.0
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 6.5e-120 435.3 461 51.4
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 2.8e-115 419.9 241 85.1
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 1.9e-111 407.1 246 79.3
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 7.8e-105 385.2 303 66.0
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.6e-103 379.0 228 80.3
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.4e-101 374.4 240 75.0
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 7.0e-98 362.1 314 64.0
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.9e-95 354.0 477 45.7
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.5e-95 353.6 437 47.8
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.6e-86 324.3 238 68.5
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.2e-86 322.4 310 56.8
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 6.8e-85 318.9 241 65.1
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 4.7e-78 296.2 247 65.2
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 5.6e-71 272.7 297 54.9
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.5e-60 238.0 145 79.3
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.4e-53 214.9 261 47.5
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 7.6e-52 209.1 105 95.2
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 2.5e-50 204.1 164 62.2
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 7.4e-47 192.6 101 88.1
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 3.7e-46 190.3 150 62.7
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.1e-41 174.5 153 62.7
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 1.5e-39 168.3 96 82.3
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 6.5e-35 152.9 99 71.7
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 1.2e-33 148.7 143 55.2
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 7.0e-29 132.9 77 83.1
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 5.9e-28 129.8 79 77.2
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 1.6e-25 121.7 160 46.2
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 1.4e-24 118.6 85 69.4
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 1.8e-16 91.7 93 53.8
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 4.1e-13 80.5 61 70.5
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 5.3e-13 80.1 70 60.0
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 2.5e-10 71.2 51 68.6
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 2.7e-09 67.8 36 83.3
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 1.8e-08 65.1 46 67.4
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 2.0e-07 61.6 30 83.3


User provided reference genes

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