Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 0.0e+00 1638.6 890 100.0
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 0.0e+00 1622.1 890 99.1
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 0.0e+00 1594.7 890 97.9
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 0.0e+00 1525.0 891 94.2
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 0.0e+00 1520.0 892 94.1
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 0.0e+00 1369.4 900 86.9
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 0.0e+00 1265.4 899 80.4
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 0.0e+00 1221.5 902 79.5
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 0.0e+00 1181.8 912 74.8
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 0.0e+00 1181.4 897 76.9
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 0.0e+00 1179.9 899 76.8
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 0.0e+00 1178.3 899 76.2
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 0.0e+00 1178.3 899 76.2
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 0.0e+00 1176.4 905 76.6
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 0.0e+00 1127.9 907 74.4
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 0.0e+00 1126.7 866 75.3
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 4.2e-287 991.5 915 65.7
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.2e-270 936.8 920 65.2
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.9e-239 833.2 852 63.1
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 5.9e-233 811.6 906 57.9
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 6.4e-219 765.0 583 75.8
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 1.3e-150 538.1 949 43.4
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 2.0e-148 530.8 951 44.6
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 2.9e-147 526.9 967 43.5
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 6.5e-147 525.8 1022 40.9
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 2.5e-146 523.9 949 44.0
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 5.5e-146 522.7 937 43.3
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.6e-145 520.0 940 41.7
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 3.6e-145 520.0 905 42.4
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.4e-144 518.1 963 42.7
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 1.8e-144 517.7 931 44.0
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.2e-143 515.0 943 43.7
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 3.7e-142 510.0 970 43.3
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 6.3e-142 509.2 947 41.3
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.4e-141 508.1 960 42.9
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.4e-141 507.3 961 43.0
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.1e-141 506.9 960 42.8
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 1.2e-140 505.0 851 42.2
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.6e-140 504.6 947 41.2
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 2.7e-140 503.8 936 42.8
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.2e-139 500.7 945 43.1
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.0e-139 499.6 844 43.1
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.5e-138 498.0 925 40.6
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-138 498.0 884 41.7
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.9e-138 497.7 943 42.9
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.9e-138 497.7 963 42.4
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.5e-138 497.3 963 40.8
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 4.2e-138 496.5 961 42.7
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 5.5e-138 496.1 945 42.9
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.5e-138 496.1 941 43.0
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 9.4e-138 495.4 940 41.7
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.2e-137 495.0 844 42.7
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.2e-137 495.0 965 40.8
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 1.2e-137 495.0 971 41.6
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.4e-136 491.5 937 40.4
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.0e-136 490.3 895 42.3
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.4e-133 479.6 952 41.9
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.2e-132 478.4 947 42.0
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.6e-132 478.0 904 43.4
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.9e-132 476.1 961 40.6
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.3e-131 474.9 967 41.3
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.9e-131 473.8 947 39.9
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.2e-129 468.4 937 40.8
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 8.0e-129 465.7 934 39.7
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.0e-128 465.3 948 41.1
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 3.0e-128 463.8 953 39.5
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 5.2e-128 463.0 965 41.7
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 1.5e-127 461.5 939 40.3
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 2.6e-127 460.7 964 40.1
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 4.4e-127 459.9 973 40.2
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 9.8e-127 458.8 894 42.6
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 1.7e-126 458.0 889 41.5
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 6.3e-126 456.1 924 41.3
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 3.1e-125 453.8 936 39.4
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 4.1e-125 453.4 944 40.0
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 4.1e-125 453.4 950 39.8
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 4.1e-125 453.4 921 39.7
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 2.7e-124 450.7 934 42.8
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 2.7e-124 450.7 917 37.8
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 3.5e-124 450.3 840 40.0
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 4.5e-124 449.9 945 41.5
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 4.5e-124 449.9 911 40.8
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 5.9e-124 449.5 923 41.4
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 5.9e-124 449.5 925 41.3
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 5.9e-124 449.5 911 40.4
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 7.8e-124 449.1 879 38.3
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 7.8e-124 449.1 960 39.4
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 1.7e-123 448.0 954 39.2
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 3.8e-123 446.8 843 40.2
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 6.6e-123 446.0 799 41.3
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.5e-122 444.9 924 39.8
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 1.2e-121 441.8 927 40.7
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 2.8e-121 440.7 901 39.7
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 4.7e-121 439.9 997 37.4
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 6.1e-121 439.5 905 41.7
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 8.0e-121 439.1 669 47.1
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.4e-120 438.3 798 40.9
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.6e-119 434.1 761 43.9
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 9.8e-119 432.2 939 40.4
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.1e-117 428.7 968 37.2
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 2.4e-117 427.6 944 37.1
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.1e-117 426.8 683 45.8
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 9.2e-117 425.6 1014 38.3
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 1.6e-116 424.9 967 39.9
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 4.6e-116 423.3 903 40.8
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 7.8e-116 422.5 982 38.8
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.7e-115 421.4 895 40.4
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.1e-114 418.7 918 39.0
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.5e-114 417.5 915 40.3
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.4e-112 411.8 866 40.6
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 4.0e-112 410.2 549 49.2
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 6.8e-112 409.5 948 37.8
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 2.2e-110 404.4 941 35.7
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 3.7e-110 403.7 893 38.9
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 5.4e-109 399.8 854 38.9
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 2.1e-108 397.9 799 38.7
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 7.8e-108 396.0 847 38.5
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 3.0e-107 394.0 882 37.6
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.5e-106 391.7 850 38.6
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 7.3e-106 389.4 961 36.6
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.2e-105 388.7 905 38.9
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.7e-102 378.3 681 43.6
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 8.3e-102 375.9 910 34.7
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 8.3e-102 375.9 883 37.9
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 2.4e-101 374.4 802 38.4
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 5.4e-101 373.2 889 37.3
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.2e-100 372.1 688 40.6
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 7.8e-100 369.4 755 36.7
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.1e-98 365.5 833 38.7
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.2e-97 362.1 918 36.8
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 4.6e-92 343.6 562 42.5
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 8.7e-91 339.3 903 35.0
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 1.5e-90 338.6 831 35.3
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 1.3e-86 325.5 821 38.4
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.7e-86 325.1 791 38.6
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.2e-85 320.5 613 41.4
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.3e-83 315.5 891 34.0
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 1.6e-81 308.5 838 34.8
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.6e-76 292.0 905 33.9
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 3.5e-76 290.8 913 32.9
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 1.6e-73 282.0 527 37.4
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 4.0e-72 277.3 730 35.5
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 9.0e-72 276.2 478 41.2
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.5e-71 275.4 496 42.3
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 7.6e-71 273.1 782 33.4
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.1e-66 259.2 681 36.3
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.5e-66 258.8 840 31.7
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 3.4e-63 247.7 689 35.0
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.0e-62 246.1 827 32.9
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.9e-61 241.9 854 32.9
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 1.4e-56 225.7 345 43.2
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 9.0e-56 223.0 461 41.2
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 6.7e-51 206.8 275 46.9
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.7e-49 202.2 414 41.5
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.8e-49 201.4 324 41.4
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 7.2e-45 186.8 399 41.6
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 3.1e-40 171.4 379 37.2
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.7e-36 158.3 548 33.2
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.3e-33 149.4 218 45.0
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 2.8e-33 148.3 411 28.7
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 8.5e-30 136.7 108 59.3
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.1e-29 136.3 282 42.9
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 2.0e-26 125.6 324 35.5
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 2.7e-23 115.2 210 41.4
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 2.2e-22 112.1 269 36.8
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.2e-22 112.1 255 42.0
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 1.1e-21 109.8 128 50.0
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 3.0e-19 101.7 103 52.4
A09p03500 Brassica napus HOM05D003655 ORTHO05D041909 1.2e-18 99.8 98 63.3
BraA09t35988Z Brassica rapa HOM05D003655 ORTHO05D041909 1.2e-18 99.8 98 63.3
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 4.4e-18 97.8 202 35.1
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.2e-17 95.5 271 32.8
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 5.9e-15 87.4 380 27.1
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 8.0e-12 77.0 48 70.8
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 1.8e-11 75.9 179 33.0
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 3.1e-08 65.1 41 61.0
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.5e-07 61.2 125 37.6
FAN24G1497 Fragaria x ananassa HOM05D000561 ORTHO05D000514 6.6e-06 57.4 154 30.5


User provided reference genes

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