Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p53640 Brassica napus HOM05D013494 ORTHO05D015477 4.3e-67 258.1 151 100.0
C02p53620 Brassica napus HOM05D013494 ORTHO05D015477 3.0e-44 182.2 157 80.3
C07p36110 Brassica napus HOM05D000350 ORTHO05D000228 8.2e-26 120.9 128 58.6
BcaC06g33868 Brassica carinata HOM05D000350 ORTHO05D000228 9.1e-25 117.5 127 57.5
AT3G27010 Arabidopsis thaliana HOM05D000350 ORTHO05D000228 3.4e-24 115.5 128 63.3
BolC2t11432H Brassica oleracea HOM05D013494 ORTHO05D015477 1.9e-22 109.8 57 93.0
BolC7t44125H Brassica oleracea HOM05D000350 ORTHO05D000228 4.2e-22 108.6 119 58.0
AL5G16030 Arabidopsis lyrata HOM05D000350 ORTHO05D000228 5.5e-22 108.2 133 60.9
BcaC06g31027 Brassica carinata HOM05D000350 ORTHO05D000228 9.4e-22 107.5 128 54.7
BraA02t08504Z Brassica rapa HOM05D013494 ORTHO05D015477 3.6e-21 105.5 55 89.1
Carub.0005s0520 Capsella rubella HOM05D000350 ORTHO05D000228 1.4e-20 103.6 134 51.5
BcaB07g30197 Brassica carinata HOM05D000350 ORTHO05D015477 1.8e-20 103.2 94 64.9
BraA02t08502Z Brassica rapa HOM05D013494 ORTHO05D015477 3.9e-20 102.1 56 87.5
A06p41550 Brassica napus HOM05D000350 ORTHO05D000228 1.1e-17 94.0 127 56.7
BraA06t27080Z Brassica rapa HOM05D000350 ORTHO05D000228 1.1e-17 94.0 127 56.7
Sp2g16130 Schrenkiella parvula HOM05D000350 ORTHO05D000228 3.1e-17 92.4 94 58.5
A02p34960 Brassica napus HOM05D013494 ORTHO05D015477 5.3e-17 91.7 100 72.0
BcaC04g23912 Brassica carinata HOM05D000350 ORTHO05D000228 1.6e-16 90.1 102 56.9
Thhalv10004391m.g Eutrema salsugineum HOM05D000350 ORTHO05D000228 1.0e-15 87.4 90 56.7
CARHR148200 Cardamine hirsuta HOM05D000350 ORTHO05D000228 2.2e-15 86.3 127 58.3
THA.LOC104823985 Tarenaya hassleriana HOM05D000350 ORTHO05D000228 3.2e-14 82.4 98 65.3
THA.LOC104825633 Tarenaya hassleriana HOM05D000350 ORTHO05D000228 9.4e-14 80.9 115 46.1
Medtr7g028160 Medicago truncatula HOM05D000350 ORTHO05D000228 1.2e-13 80.5 70 58.6
THA.LOC104805322 Tarenaya hassleriana HOM05D000350 ORTHO05D015477 2.1e-13 79.7 98 65.3
Aa31LG2G5580 Aethionema arabicum HOM05D000350 ORTHO05D000228 2.7e-13 79.3 94 51.1
TPR.G8574 Trifolium pratense HOM05D000350 ORTHO05D000228 1.4e-12 77.0 96 49.0
Cfa007207 Carpinus fangiana HOM05D000350 ORTHO05D000228 4.0e-12 75.5 94 48.9
Manes.11G083000 Manihot esculenta HOM05D000350 ORTHO05D000228 5.2e-12 75.1 89 50.6
CANSAT64G1794 Cannabis sativa HOM05D000350 ORTHO05D000228 6.7e-12 74.7 100 57.0
CiPaw.03G058100 Carya illinoinensis HOM05D000350 ORTHO05D000228 8.8e-12 74.3 91 54.9
Gohir.D04G075200 Gossypium hirsutum HOM05D000350 ORTHO05D000228 8.8e-12 74.3 94 54.3
Gorai.012G084600 Gossypium raimondii HOM05D000350 ORTHO05D000228 8.8e-12 74.3 94 54.3
Gohir.A05G336700 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.2e-11 73.9 94 55.3
Nn4g22245 Nelumbo nucifera HOM05D000350 ORTHO05D000228 1.2e-11 73.9 107 41.1
arahy.Tifrunner.gnm1.ann1.KNN8RN Arachis hypogaea HOM05D000350 ORTHO05D000228 1.5e-11 73.6 87 62.1
arahy.Tifrunner.gnm1.ann1.XF5UIG Arachis hypogaea HOM05D000350 ORTHO05D000228 1.5e-11 73.6 101 54.5
TAR629G0902 Trochodendron aralioides HOM05D000350 ORTHO05D000228 1.5e-11 73.6 132 37.1
Haze_14898 Corylus avellana HOM05D000350 ORTHO05D000228 2.6e-11 72.8 94 56.4
Hma1.2p1_1184F.1_g264850 Hydrangea macrophylla HOM05D000350 ORTHO05D000228 2.6e-11 72.8 91 46.2
Lj1g0021676 Lotus japonicus HOM05D000350 ORTHO05D000228 2.6e-11 72.8 111 53.2
CiPaw.04G039400 Carya illinoinensis HOM05D000350 ORTHO05D000228 3.3e-11 72.4 94 44.7
Gohir.A09G037265 Gossypium hirsutum HOM05D000350 ORTHO05D000228 3.3e-11 72.4 94 47.9
Gohir.D09G038300 Gossypium hirsutum HOM05D000350 ORTHO05D000228 3.3e-11 72.4 94 47.9
Gorai.006G043800 Gossypium raimondii HOM05D000350 ORTHO05D000228 3.3e-11 72.4 94 47.9
vmacro18359 Vaccinium macrocarpon HOM05D000350 ORTHO05D000228 4.4e-11 72.0 95 58.9
Lalb_Chr00c01g0403801 Lupinus albus HOM05D000350 ORTHO05D000228 5.7e-11 71.6 69 58.0
QL02p070859 Quercus lobata HOM05D000350 ORTHO05D000228 5.7e-11 71.6 100 57.0
Lj6P831T22 Lonicera japonica HOM05D000350 ORTHO05D000228 7.5e-11 71.2 89 40.4
TWI32G0247 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 7.5e-11 71.2 108 54.6
Duzib147G0245 Durio zibethinus HOM05D000350 ORTHO05D000228 9.7e-11 70.9 94 53.2
Duzib264G0804 Durio zibethinus HOM05D000350 ORTHO05D000228 9.7e-11 70.9 108 42.6
Nn3g16385 Nelumbo nucifera HOM05D000350 ORTHO05D000228 9.7e-11 70.9 111 53.2
Rhsim10G0004700 Rhododendron simsii HOM05D000350 ORTHO05D000228 9.7e-11 70.9 97 50.5
CSS0049039 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 1.3e-10 70.5 94 58.5
Glyma.16G053900 Glycine max HOM05D000350 ORTHO05D000228 1.3e-10 70.5 98 62.2
C09p03440 Brassica napus HOM05D000350 ORTHO05D000228 2.2e-10 69.7 67 62.7
Duzib187G1441 Durio zibethinus HOM05D000350 ORTHO05D000228 2.2e-10 69.7 94 55.3
Thecc.04G040300 Theobroma cacao HOM05D000350 ORTHO05D000228 2.2e-10 69.7 94 55.3
MD17G1002500 Malus domestica HOM05D000350 ORTHO05D000228 2.8e-10 69.3 97 60.8
Gohir.D10G079800 Gossypium hirsutum HOM05D000350 ORTHO05D000228 3.7e-10 68.9 94 59.6
Gorai.011G086900 Gossypium raimondii HOM05D000350 ORTHO05D000228 3.7e-10 68.9 94 59.6
TWI34G0775 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 3.7e-10 68.9 94 55.3
TWI34G1853 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 3.7e-10 68.9 94 55.3
Ca_26316_v3 Cicer arietinum L. HOM05D000350 ORTHO05D000228 4.8e-10 68.6 107 47.7
FAN09G2515 Fragaria x ananassa HOM05D000350 ORTHO05D000228 4.8e-10 68.6 94 57.4
Ciclev10015977m.g Citrus clementina HOM05D000350 ORTHO05D000228 6.3e-10 68.2 100 55.0
Psat3g162880 Pisum sativum HOM05D000350 ORTHO05D000228 6.3e-10 68.2 93 47.3
Potri.001G327100 Populus trichocarpa HOM05D000350 ORTHO05D000228 6.3e-10 68.2 94 52.1
RcHm_v2.0_Chr2g0175971 Rosa chinensis HOM05D000350 ORTHO05D000228 6.3e-10 68.2 93 60.2
Cpa.g.sc70.118 Carica papaya HOM05D000350 ORTHO05D000228 8.2e-10 67.8 99 55.6
Lalb_Chr22g0360271 Lupinus albus HOM05D000350 ORTHO05D000228 8.2e-10 67.8 96 51.0
Sc03g0006340 Simmondsia chinensis HOM05D000350 ORTHO05D000228 8.2e-10 67.8 63 50.8
Atru.chr6.2597 Acer truncatum HOM05D000350 ORTHO05D000228 1.1e-09 67.4 96 47.9
Prupe.3G308700 Prunus persica HOM05D000350 ORTHO05D000228 1.4e-09 67.0 95 57.9
Thecc.02G200900 Theobroma cacao HOM05D000350 ORTHO05D000228 1.4e-09 67.0 107 39.3
BolC2t11430H Brassica oleracea HOM05D013494 ORTHO05D039442 2.4e-09 66.2 31 96.8
CsaV3_3G026870 Cucumis sativus L. HOM05D000350 ORTHO05D000228 3.1e-09 65.9 82 45.1
Glyma.19G095300 Glycine max HOM05D000350 ORTHO05D000228 3.1e-09 65.9 93 54.8
Potri.017G068748 Populus trichocarpa HOM05D000350 ORTHO05D000228 3.1e-09 65.9 92 45.7
TAR371G0550 Trochodendron aralioides HOM05D000918 ORTHO05D000228 3.1e-09 65.9 98 39.8
TAR374G0904 Trochodendron aralioides HOM05D000350 ORTHO05D000228 3.1e-09 65.9 108 38.9
BcaC03g17413 Brassica carinata HOM05D013494 ORTHO05D015477 4.1e-09 65.5 30 100.0
BcaC03g17414 Brassica carinata HOM05D013494 ORTHO05D015477 4.1e-09 65.5 30 100.0
BolC9t53265H Brassica oleracea HOM05D000350 ORTHO05D000228 4.1e-09 65.5 65 63.1
MD09G1008300 Malus domestica HOM05D000350 ORTHO05D000228 4.1e-09 65.5 98 59.2
Oeu035242.1 Olea europaea HOM05D000350 ORTHO05D000228 4.1e-09 65.5 94 41.5
Sabra16G0209500 Salix brachista HOM05D000350 ORTHO05D000228 4.1e-09 65.5 94 46.8
TWI60G1078 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 4.1e-09 65.5 100 56.0
COL.COLO4_13292 Corchorus olitorius HOM05D000350 ORTHO05D000228 5.3e-09 65.1 95 60.0
Gohir.A10G071300 Gossypium hirsutum HOM05D000350 ORTHO05D000228 5.3e-09 65.1 96 59.4
Cfa009393 Carpinus fangiana HOM05D000350 ORTHO05D000228 7.0e-09 64.7 93 37.6
CiPaw.06G105800 Carya illinoinensis HOM05D000350 ORTHO05D000228 7.0e-09 64.7 98 36.7
Phvul.001G089100 Phaseolus vulgaris HOM05D000350 ORTHO05D000228 7.0e-09 64.7 97 51.5
Rhsim08G0041600 Rhododendron simsii HOM05D000350 ORTHO05D000228 7.0e-09 64.7 67 55.2
Haze_12453 Corylus avellana HOM05D000350 ORTHO05D000228 9.1e-09 64.3 93 37.6
Dinv25646 Davidia involucrata HOM05D000350 ORTHO05D000228 9.1e-09 64.3 96 50.0
FAN14G4523 Fragaria x ananassa HOM05D000350 ORTHO05D000228 9.1e-09 64.3 97 57.7
ClCG05G013720 Citrullus lanatus HOM05D000350 ORTHO05D000228 1.2e-08 63.9 108 46.3
FAN02G1392 Fragaria x ananassa HOM05D000350 ORTHO05D000228 1.2e-08 63.9 106 53.8
FAN05G4127 Fragaria x ananassa HOM05D000350 ORTHO05D000228 1.2e-08 63.9 97 57.7
Peaxi162Scf00420g00064 Petunia axillaris HOM05D000350 ORTHO05D000228 1.2e-08 63.9 110 46.4
Actinidia36216 Actinidia chinensis HOM05D000350 ORTHO05D000228 1.6e-08 63.5 79 60.8
A02p34940 Brassica napus HOM05D013494 ORTHO05D015477 1.6e-08 63.5 31 90.3
Ciclev10032374m.g Citrus clementina HOM05D000350 ORTHO05D000228 1.6e-08 63.5 133 34.6
HPP92_006995 Vanilla planifolia HOM05D000350 ORTHO05D000228 1.6e-08 63.5 98 38.8
ATR0582G195 Amborella trichopoda HOM05D000350 ORTHO05D000228 2.0e-08 63.2 113 38.1
MELO3C014903.2 Cucumis melo HOM05D000350 ORTHO05D000228 2.0e-08 63.2 82 46.3
Manes.04G088500 Manihot esculenta HOM05D000350 ORTHO05D000228 2.0e-08 63.2 88 54.5
TAR622G0201 Trochodendron aralioides HOM05D000350 ORTHO05D000228 2.0e-08 63.2 107 45.8
Aqoxy3G01633 Aquilegia oxysepala HOM05D000350 ORTHO05D000228 2.7e-08 62.8 108 38.0
CAN.G1525.3 Capsicum annuum HOM05D000350 ORTHO05D000228 2.7e-08 62.8 63 49.2
Actinidia05888 Actinidia chinensis HOM05D000350 ORTHO05D000228 3.5e-08 62.4 94 50.0
CiPaw.05G106400 Carya illinoinensis HOM05D000350 ORTHO05D000228 3.5e-08 62.4 132 28.8
A09p03240 Brassica napus HOM05D000350 ORTHO05D000228 4.5e-08 62.0 83 54.2
BraA09t35962Z Brassica rapa HOM05D000350 ORTHO05D000228 4.5e-08 62.0 83 54.2
Manes.13G008300 Manihot esculenta HOM05D000350 ORTHO05D000228 5.9e-08 61.6 104 35.6
VMungo1383G3709 Vigna mungo HOM05D000350 ORTHO05D000228 5.9e-08 61.6 92 57.6
FvH4_6g53830 Fragaria vesca HOM05D000350 ORTHO05D000228 7.7e-08 61.2 97 56.7
Oeu062525.1 Olea europaea HOM05D000350 ORTHO05D000228 7.7e-08 61.2 95 41.1
BcaC04g23911 Brassica carinata HOM05D013494 ORTHO05D015477 1.0e-07 60.8 70 57.1
Carub.0007s3446 Capsella rubella HOM05D000350 ORTHO05D000228 1.0e-07 60.8 80 50.0
Potri.001G060000 Populus trichocarpa HOM05D000350 ORTHO05D000228 1.0e-07 60.8 132 34.1
HPP92_000343 Vanilla planifolia HOM05D000350 ORTHO05D000228 1.0e-07 60.8 95 41.1
Sed0024351 Sechium edule HOM05D000350 ORTHO05D000228 1.3e-07 60.5 80 58.8
Gorai.001G273300 Gossypium raimondii HOM05D000350 ORTHO05D000228 2.2e-07 59.7 95 55.8
Lj7P611T37 Lonicera japonica HOM05D000350 ORTHO05D000228 2.2e-07 59.7 65 53.8
PSO017G0744 Papaver somniferum HOM05D000350 ORTHO05D000228 2.2e-07 59.7 67 47.8
PSO478G3234 Papaver somniferum HOM05D000350 ORTHO05D000228 2.2e-07 59.7 74 43.2
PSO478G4219 Papaver somniferum HOM05D000350 ORTHO05D000228 2.2e-07 59.7 67 47.8
Cc07_g01000 Coffea canephora HOM05D000350 ORTHO05D000228 2.9e-07 59.3 67 50.7
Gohir.A07G230200 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.9e-07 59.3 95 58.9
PGSC0003DMG400040232 Solanum tuberosum HOM05D000350 ORTHO05D000228 2.9e-07 59.3 95 54.7
CARHR213340 Cardamine hirsuta HOM05D000350 ORTHO05D000228 3.8e-07 58.9 97 44.3
Sed0020156 Sechium edule HOM05D000350 ORTHO05D000228 3.8e-07 58.9 95 41.1
PSO017G7103 Papaver somniferum HOM05D000350 ORTHO05D000228 5.0e-07 58.5 71 43.7
CSS0002855 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 6.5e-07 58.2 107 43.0
CAN.G473.122 Capsicum annuum HOM05D000350 ORTHO05D000228 6.5e-07 58.2 90 43.3
Eucgr.B03529 Eucalyptus grandis HOM05D000350 ORTHO05D000228 6.5e-07 58.2 66 48.5
Sopen02g017300 Solanum pennellii HOM05D000350 ORTHO05D000228 6.5e-07 58.2 58 55.2
Nitab4.5_0003376g0090 Nicotiana tabacum HOM05D000350 ORTHO05D000228 1.5e-06 57.0 102 40.2
Prupe.1G222000 Prunus persica HOM05D000350 ORTHO05D000228 1.5e-06 57.0 65 44.6
Potri.003G167900 Populus trichocarpa HOM05D000350 ORTHO05D000228 1.9e-06 56.6 131 30.5
HanXRQChr09g0256441 Helianthus annuus HOM05D000350 ORTHO05D000228 2.5e-06 56.2 60 50.0
Manes.12G007700 Manihot esculenta HOM05D000350 ORTHO05D000228 2.5e-06 56.2 96 41.7
Solyc02g068200.1 Solanum lycopersicum HOM05D000350 ORTHO05D000228 2.5e-06 56.2 58 53.4
CDE02G4659 Ceratophyllum demersum HOM05D000350 ORTHO05D000228 3.2e-06 55.8 76 38.2
Duzib052G0017 Durio zibethinus HOM05D000350 ORTHO05D000228 3.2e-06 55.8 92 35.9
Sabra01G0043000 Salix brachista HOM05D000350 ORTHO05D000228 3.2e-06 55.8 132 33.3
Aqoxy5G03265 Aquilegia oxysepala HOM05D000350 ORTHO05D000228 5.5e-06 55.1 68 45.6
QL03p051355 Quercus lobata HOM05D000350 ORTHO05D000228 5.5e-06 55.1 64 43.8
Nitab4.5_0007375g0060 Nicotiana tabacum HOM05D000350 ORTHO05D000228 7.2e-06 54.7 90 53.3
Nitab4.5_0011381g0030 Nicotiana tabacum HOM05D000350 ORTHO05D000228 7.2e-06 54.7 56 53.6
AT5G41030 Arabidopsis thaliana HOM05D000350 ORTHO05D000228 9.4e-06 54.3 85 44.7
DCAR_014495 Daucus carota HOM05D000350 ORTHO05D000228 9.4e-06 54.3 95 40.0
Gohir.A12G141100 Gossypium hirsutum HOM05D000350 ORTHO05D000228 9.4e-06 54.3 91 38.5
Gohir.D12G146000 Gossypium hirsutum HOM05D000350 ORTHO05D000228 9.4e-06 54.3 91 38.5
Gorai.008G157300 Gossypium raimondii HOM05D000350 ORTHO05D000228 9.4e-06 54.3 91 38.5


User provided reference genes

Program Settings