Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 0.0e+00 2141.7 1106 100.0
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 5.6e-265 918.3 1243 49.9
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 4.5e-254 882.1 1266 49.5
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 6.0e-251 871.7 1218 50.7
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 3.0e-250 869.4 1241 48.9
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 3.0e-250 869.4 1222 51.0
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 6.7e-250 868.2 1229 48.3
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 6.7e-250 868.2 1256 47.8
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 4.5e-246 855.5 1223 50.6
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 3.0e-242 842.8 1191 49.9
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 3.0e-242 842.8 1191 49.9
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 5.3e-239 832.0 1191 49.5
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 4.2e-220 769.2 1276 45.4
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 2.6e-209 733.4 1080 46.8
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 4.5e-182 642.9 1276 41.0
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 7.6e-145 519.2 612 58.8
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 1.2e-137 495.4 1308 34.7
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 8.4e-136 489.2 1272 34.4
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 1.1e-135 488.8 668 52.7
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 1.1e-135 488.8 1262 34.9
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 1.4e-135 488.4 1254 36.6
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 1.9e-135 488.0 1285 34.8
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 1.9e-135 488.0 1288 34.8
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 3.2e-135 487.3 1260 34.5
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 2.7e-134 484.2 1281 36.0
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 4.6e-134 483.4 1273 33.5
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 9.6e-132 475.7 1273 34.5
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 9.6e-132 475.7 1263 34.4
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 6.2e-131 473.0 1192 36.0
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 6.2e-131 473.0 705 45.4
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 6.2e-131 473.0 1258 35.1
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 8.1e-131 472.6 1312 32.8
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 4.0e-130 470.3 1264 34.7
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 1.5e-129 468.4 1309 33.7
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 1.5e-129 468.4 1305 33.1
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 4.5e-129 466.8 1270 34.8
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 4.9e-128 463.4 1319 33.2
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 2.5e-127 461.1 1297 33.5
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 2.5e-127 461.1 1332 33.0
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.2e-126 458.8 1303 33.3
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 1.6e-126 458.4 1326 34.4
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 4.6e-126 456.8 1268 33.5
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 1.3e-125 455.3 573 49.4
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 3.9e-125 453.8 1337 33.0
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 1.5e-124 451.8 1309 33.6
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 1.9e-124 451.4 587 47.2
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 1.3e-123 448.7 1360 33.3
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 3.7e-123 447.2 1312 33.7
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 8.2e-123 446.0 1271 34.5
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 1.1e-122 445.7 1244 33.9
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 1.5e-121 441.8 1342 33.5
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 2.0e-121 441.4 1295 33.2
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 3.4e-121 440.7 1352 32.0
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 5.8e-121 439.9 1356 32.4
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 7.6e-121 439.5 1295 33.1
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 2.2e-120 438.0 1340 32.5
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 2.9e-120 437.6 1266 34.3
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 8.4e-120 436.0 1269 34.3
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 2.5e-119 434.5 1273 34.1
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 4.2e-119 433.7 1359 32.2
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 2.7e-118 431.0 1182 34.0
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 7.9e-118 429.5 1275 32.5
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 1.0e-117 429.1 1271 32.6
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 1.0e-117 429.1 1384 31.9
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 6.7e-117 426.4 1280 33.5
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 2.5e-116 424.5 1393 32.4
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 3.3e-116 424.1 1348 31.7
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 9.7e-116 422.5 1250 32.9
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 1.3e-115 422.2 1360 31.7
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 1.6e-115 421.8 1240 32.4
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 4.8e-115 420.2 1301 32.7
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 1.1e-114 419.1 1149 34.5
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 3.1e-114 417.5 1376 31.8
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 1.2e-113 415.6 1328 32.1
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.0e-112 412.5 1268 32.7
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 1.0e-112 412.5 577 45.9
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 1.3e-112 412.1 1258 32.8
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 2.3e-109 401.4 1275 32.0
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 3.0e-109 401.0 1281 32.0
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 1.1e-108 399.1 569 44.3
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 4.3e-108 397.1 1270 32.7
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 7.4e-108 396.4 1282 31.7
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.3e-107 395.6 1253 31.7
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 4.1e-106 390.6 599 41.7
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 1.5e-105 388.7 1283 32.6
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 2.0e-105 388.3 1351 30.7
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 2.9e-104 384.4 1260 31.7
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 7.2e-103 379.8 1281 30.7
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 2.1e-102 378.3 1239 32.6
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 4.7e-102 377.1 1179 32.5
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 6.1e-102 376.7 585 42.7
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 1.0e-101 375.9 1192 31.5
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 3.9e-101 374.0 1304 29.9
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 2.0e-100 371.7 1501 28.6
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.7e-99 368.6 736 37.9
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 6.1e-94 350.1 717 35.6
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 1.4e-90 339.0 1130 30.7
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 3.2e-87 327.8 1200 30.8
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.1e-86 325.1 402 47.3
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 2.3e-85 321.6 1209 30.6
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 1.2e-84 319.3 1295 29.2
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 1.1e-79 302.8 571 37.5
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 3.1e-74 284.6 631 34.2
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 7.7e-73 280.0 1308 27.6
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 1.7e-72 278.9 1151 28.7
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 3.3e-71 274.6 1146 29.0
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.3e-69 268.5 450 44.2
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 2.0e-68 265.4 1225 27.8
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 5.8e-60 237.3 1037 27.7
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 7.0e-58 230.3 619 31.5
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 9.5e-55 219.9 627 33.0
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 2.1e-54 218.8 662 31.0
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 3.1e-45 188.3 975 26.1
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 4.0e-45 188.0 352 33.2
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 3.7e-43 181.4 950 26.0
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 1.9e-39 169.1 231 48.5
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 2.6e-36 158.7 211 45.5
A02p33240 Brassica napus HOM05D004594 ORTHO05D005225 9.9e-36 156.8 131 77.1
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 6.6e-32 144.1 74 91.9
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 8.4e-27 127.1 92 62.0
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 3.2e-26 125.2 172 41.3
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 1.1e-15 90.1 307 27.0
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 1.5e-15 89.7 254 35.8
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 3.3e-15 88.6 82 57.3
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 3.3e-15 88.6 108 44.4
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 5.6e-15 87.8 133 39.1
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 4.8e-14 84.7 71 53.5
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 8.1e-14 84.0 57 73.7
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 1.4e-13 83.2 136 42.6
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 1.8e-13 82.8 98 49.0
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 9.3e-10 70.5 107 43.9
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 3.5e-09 68.6 57 49.1
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 1.0e-08 67.0 764 26.4
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 3.0e-08 65.5 50 60.0
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 3.9e-08 65.1 174 33.3
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 1.5e-07 63.2 86 44.2
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 1.6e-06 59.7 322 27.6


User provided reference genes

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