Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p50830 Brassica napus HOM05D010352 ORTHO05D012062 1.3e-121 439.9 240 100.0
A02p33060 Brassica napus HOM05D010352 ORTHO05D012062 2.6e-82 309.3 239 78.7
BraA02t08327Z Brassica rapa HOM05D010352 ORTHO05D012062 2.1e-63 246.5 165 86.1
BcaC07g42627 Brassica carinata HOM05D010352 ORTHO05D012062 1.4e-51 207.2 150 72.0
BolC2t11165H Brassica oleracea HOM05D010352 ORTHO05D012062 5.8e-50 201.8 102 95.1
A09p54100 Brassica napus HOM05D010352 ORTHO05D012062 1.1e-43 181.0 151 62.9
BraA09t40823Z Brassica rapa HOM05D010352 ORTHO05D012062 2.6e-42 176.4 144 63.9
BcaC03g17159 Brassica carinata HOM05D010352 ORTHO05D012062 3.4e-42 176.0 175 57.1
BolC2t11166H Brassica oleracea HOM05D010352 ORTHO05D012062 7.1e-40 168.3 163 60.1
BcaC07g42628 Brassica carinata HOM05D010352 ORTHO05D012062 3.0e-38 162.9 152 63.2
A09p54110 Brassica napus HOM05D010352 ORTHO05D012062 1.9e-37 160.2 153 56.9
C08p36990 Brassica napus HOM05D010352 ORTHO05D012062 6.2e-36 155.2 154 54.5
BraA09t40825Z Brassica rapa HOM05D010352 ORTHO05D012062 2.4e-35 153.3 160 54.4
BcaC03g17158 Brassica carinata HOM05D010352 ORTHO05D031768 8.4e-33 144.8 71 93.0
BolC4t24609H Brassica oleracea HOM05D001456 ORTHO05D012062 1.6e-31 140.6 129 52.7
BcaC02g10275 Brassica carinata HOM05D001456 ORTHO05D012062 3.5e-31 139.4 129 52.7
C04p30870 Brassica napus HOM05D001456 ORTHO05D012062 3.5e-31 139.4 129 52.7
Carub.0005s2878 Capsella rubella HOM05D001456 ORTHO05D012062 2.8e-28 129.8 129 49.6
AT3G62050 Arabidopsis thaliana HOM05D001456 ORTHO05D012062 2.4e-27 126.7 147 43.5
AL5G44650 Arabidopsis lyrata HOM05D001456 ORTHO05D012062 1.4e-24 117.5 129 42.6
BraA02t08328Z Brassica rapa HOM05D010352 ORTHO05D012062 2.1e-23 113.6 122 53.3
BcaNung02251 Brassica carinata HOM05D001456 ORTHO05D012062 2.7e-23 113.2 129 45.0
CARHR150720 Cardamine hirsuta HOM05D001456 ORTHO05D012062 1.7e-17 94.0 100 43.0
BcaC03g17162 Brassica carinata HOM05D010352 ORTHO05D031768 4.2e-16 89.4 55 72.7
BolC2t11170H Brassica oleracea HOM05D010352 ORTHO05D031768 4.2e-16 89.4 55 72.7
BcaC02g08726 Brassica carinata HOM05D001456 ORTHO05D031976 1.2e-15 87.8 140 35.0
C04p51270 Brassica napus HOM05D001456 ORTHO05D031976 1.2e-15 87.8 140 35.0
BolC4t26717H Brassica oleracea HOM05D001456 ORTHO05D031976 1.2e-15 87.8 140 35.0
BcaC07g42629 Brassica carinata HOM05D010352 ORTHO05D012062 2.0e-13 80.5 139 38.1
CDE09G1275 Ceratophyllum demersum HOM05D001456 ORTHO05D002799 1.3e-12 77.8 102 36.3
CAN.G497.101 Capsicum annuum HOM05D001456 ORTHO05D002799 1.4e-11 74.3 107 36.4
A02p41490 Brassica napus HOM05D001456 ORTHO05D014991 1.8e-11 73.9 103 38.8
A07p06650 Brassica napus HOM05D010352 ORTHO05D039704 1.8e-11 73.9 104 37.5
Lalb_Chr06g0167321 Lupinus albus HOM05D001456 ORTHO05D002799 2.4e-11 73.6 116 33.6
VMungo0720G0252 Vigna mungo HOM05D001456 ORTHO05D002799 3.1e-11 73.2 116 34.5
C02p61420 Brassica napus HOM05D001456 ORTHO05D014991 6.9e-11 72.0 103 37.9
BolC2t12194H Brassica oleracea HOM05D001456 ORTHO05D014991 6.9e-11 72.0 103 37.9
PGR031G1599 Punica granatum HOM05D001456 ORTHO05D002799 6.9e-11 72.0 107 35.5
PGR031G3460 Punica granatum HOM05D001456 ORTHO05D002799 6.9e-11 72.0 107 35.5
Solyc02g088850.3 Solanum lycopersicum HOM05D001456 ORTHO05D002799 6.9e-11 72.0 107 34.6
PGR031G2483 Punica granatum HOM05D001456 ORTHO05D002799 9.1e-11 71.6 107 34.6
THA.LOC104802123 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 9.1e-11 71.6 102 36.3
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 9.1e-11 71.6 102 35.3
AT3G62200 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 1.5e-10 70.9 102 36.3
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 1.5e-10 70.9 124 31.5
CARHR172540 Cardamine hirsuta HOM05D001456 ORTHO05D002799 2.0e-10 70.5 102 36.3
AL5G44950 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 2.6e-10 70.1 102 36.3
BcaC06g33212 Brassica carinata HOM05D001456 ORTHO05D027445 2.6e-10 70.1 107 33.6
C07p44860 Brassica napus HOM05D001456 ORTHO05D027445 2.6e-10 70.1 107 33.6
BolC7t45010H Brassica oleracea HOM05D001456 ORTHO05D027445 2.6e-10 70.1 107 33.6
Sopen02g033570 Solanum pennellii HOM05D001456 ORTHO05D002799 2.6e-10 70.1 107 31.8
Sopen02g033580 Solanum pennellii HOM05D000002 ORTHO05D000001 2.6e-10 70.1 106 34.0
VMungo1383G0246 Vigna mungo HOM05D001456 ORTHO05D002799 2.6e-10 70.1 107 33.6
AT3G62210 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 3.4e-10 69.7 173 29.5
BcaC06g33211 Brassica carinata HOM05D001456 ORTHO05D002799 3.4e-10 69.7 107 33.6
C07p44850 Brassica napus HOM05D001456 ORTHO05D002799 3.4e-10 69.7 107 33.6
BolC7t45008H Brassica oleracea HOM05D001456 ORTHO05D002799 3.4e-10 69.7 107 33.6
Thhalv10003587m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 3.4e-10 69.7 107 34.6
THA.LOC104817439 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 3.4e-10 69.7 102 36.3
BcaB04g19904 Brassica carinata HOM05D001456 ORTHO05D002799 4.5e-10 69.3 107 33.6
C07p44870 Brassica napus HOM05D001456 ORTHO05D014991 4.5e-10 69.3 102 36.3
Carub.0005s2893 Capsella rubella HOM05D001456 ORTHO05D002799 4.5e-10 69.3 102 36.3
PGR031G1658 Punica granatum HOM05D001456 ORTHO05D002799 4.5e-10 69.3 102 35.3
Solyc02g088870.1 Solanum lycopersicum HOM05D001456 ORTHO05D002799 4.5e-10 69.3 107 31.8
BcaC06g33175 Brassica carinata HOM05D001456 ORTHO05D002799 5.9e-10 68.9 107 33.6
A03p46800 Brassica napus HOM05D001456 ORTHO05D002799 5.9e-10 68.9 107 33.6
A03p46820 Brassica napus HOM05D001456 ORTHO05D014991 5.9e-10 68.9 102 34.3
BolC7t45011H Brassica oleracea HOM05D001456 ORTHO05D014991 5.9e-10 68.9 102 34.3
BraA03t13802Z Brassica rapa HOM05D001456 ORTHO05D027445 5.9e-10 68.9 107 33.6
Cc01_g21840 Coffea canephora HOM05D001456 ORTHO05D002799 5.9e-10 68.9 107 35.5
PGSC0003DMG400001458 Solanum tuberosum HOM05D001456 ORTHO05D002799 5.9e-10 68.9 107 32.7
Zm00001eb328720 Zea mays HOM05D001456 ORTHO05D002799 5.9e-10 68.9 107 34.6
BcaC06g33215 Brassica carinata HOM05D001456 ORTHO05D014991 7.7e-10 68.6 102 34.3
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 7.7e-10 68.6 107 34.6
Thhalv10003670m.g Eutrema salsugineum HOM05D001456 ORTHO05D014991 7.7e-10 68.6 102 36.3
Glyma.03G223251 Glycine max HOM05D001456 ORTHO05D002799 7.7e-10 68.6 159 28.9
BcaB01g00644 Brassica carinata HOM05D010352 ORTHO05D039704 1.0e-09 68.2 130 32.3
BcaC08g46204 Brassica carinata HOM05D001456 ORTHO05D009465 1.0e-09 68.2 101 34.7
C02p25960 Brassica napus HOM05D001636 ORTHO05D009134 1.0e-09 68.2 209 25.8
C06p42210 Brassica napus HOM05D001456 ORTHO05D002799 1.0e-09 68.2 101 34.7
BolC6t39204H Brassica oleracea HOM05D001456 ORTHO05D002799 1.0e-09 68.2 102 34.3
CARHR274930 Cardamine hirsuta HOM05D001456 ORTHO05D002799 1.3e-09 67.8 102 34.3
Duzib211G0259 Durio zibethinus HOM05D001456 ORTHO05D002799 1.3e-09 67.8 105 34.3
Aqoxy5G02078 Aquilegia oxysepala HOM05D004262 ORTHO05D004886 1.7e-09 67.4 100 36.0
AL8G37850 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 1.7e-09 67.4 102 35.3
A09p07250 Brassica napus HOM05D001456 ORTHO05D002799 1.7e-09 67.4 112 33.9
C07p44880 Brassica napus HOM05D001456 ORTHO05D014991 1.7e-09 67.4 102 34.3
Carub.0005s1571 Capsella rubella HOM05D010352 ORTHO05D012062 1.7e-09 67.4 127 31.5
TAR362G0556 Trochodendron aralioides HOM05D001456 ORTHO05D002799 1.7e-09 67.4 100 34.0
BcaC04g23460 Brassica carinata HOM05D001456 ORTHO05D002799 2.2e-09 67.0 107 33.6
BcaC06g33174 Brassica carinata HOM05D001456 ORTHO05D014991 2.2e-09 67.0 103 37.9
C09p08100 Brassica napus HOM05D001456 ORTHO05D002799 2.2e-09 67.0 107 33.6
BolC9t53724H Brassica oleracea HOM05D001456 ORTHO05D002799 2.2e-09 67.0 107 33.6
Thhalv10005803m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 2.2e-09 67.0 102 33.3
MBI18_g09644_MAGBIO Magnolia biondii HOM05D001456 ORTHO05D002799 2.2e-09 67.0 103 34.0
QL03p010255 Quercus lobata HOM05D001456 ORTHO05D002799 2.2e-09 67.0 110 33.6
QL03p010491 Quercus lobata HOM05D001456 ORTHO05D002799 2.2e-09 67.0 110 33.6
EL10Ac8g19630 Beta vulgaris HOM05D001456 ORTHO05D002799 2.9e-09 66.6 107 32.7
Ciclev10019276m.g Citrus clementina HOM05D001456 ORTHO05D002799 3.8e-09 66.2 123 33.3
AL7G21380 Arabidopsis lyrata HOM05D001456 ORTHO05D011865 6.5e-09 65.5 105 33.3
AT5G61190 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 6.5e-09 65.5 102 35.3
TAR625G1293 Trochodendron aralioides HOM05D004262 ORTHO05D004886 6.5e-09 65.5 100 34.0
PSO675G0841 Papaver somniferum HOM05D004262 ORTHO05D004886 8.5e-09 65.1 100 36.0
AL5G20610 Arabidopsis lyrata HOM05D001456 ORTHO05D019698 1.1e-08 64.7 96 37.5
Zm00001eb109990 Zea mays HOM05D001456 ORTHO05D002799 1.1e-08 64.7 107 32.7
BraA03t14241Z Brassica rapa HOM05D001636 ORTHO05D009134 1.4e-08 64.3 224 24.1
Carub.0008s2185 Capsella rubella HOM05D001456 ORTHO05D002799 1.4e-08 64.3 102 32.4
Nn5g28756 Nelumbo nucifera HOM05D004262 ORTHO05D004886 1.4e-08 64.3 92 33.7
Ah.14g086290 Amaranthus hybridus HOM05D001456 ORTHO05D002799 1.9e-08 63.9 102 33.3
SMO143G0012 Selaginella moellendorffii HOM05D001456 ORTHO05D004886 1.9e-08 63.9 103 34.0
TAR250G0005 Trochodendron aralioides HOM05D004262 ORTHO05D004886 1.9e-08 63.9 100 34.0
TAR381G1254 Trochodendron aralioides HOM05D004262 ORTHO05D004886 1.9e-08 63.9 100 34.0
Aa31LG10G16120 Aethionema arabicum HOM05D001456 ORTHO05D002799 2.5e-08 63.5 96 36.5
Oeu064303.1 Olea europaea HOM05D004262 ORTHO05D004886 2.5e-08 63.5 100 32.0
Os12g0162900 Oryza sativa ssp. japonica HOM05D004262 ORTHO05D004886 2.5e-08 63.5 100 30.0
Solyc02g088860.2 Solanum lycopersicum HOM05D001456 ORTHO05D002799 2.5e-08 63.5 107 31.8
Aa31LG11G2170 Aethionema arabicum HOM05D001456 ORTHO05D002799 3.2e-08 63.2 102 33.3
Mapoly0025s0013 Marchantia polymorpha HOM05D001456 ORTHO05D004886 3.2e-08 63.2 103 33.0
ATR0820G094 Amborella trichopoda HOM05D004262 ORTHO05D004886 4.2e-08 62.8 100 33.0
BcaC07g40712 Brassica carinata HOM05D001456 ORTHO05D002799 4.2e-08 62.8 102 32.4
C08p37150 Brassica napus HOM05D001456 ORTHO05D002799 4.2e-08 62.8 102 32.4
BolC8t51292H Brassica oleracea HOM05D001456 ORTHO05D002799 4.2e-08 62.8 102 32.4
SGA_v2.0_scaffold80G25683 Striga asiatica HOM05D001456 ORTHO05D002799 4.2e-08 62.8 102 32.4
Aa31LG11G2180 Aethionema arabicum HOM05D001456 ORTHO05D002799 5.5e-08 62.4 102 32.4
A09p52590 Brassica napus HOM05D001456 ORTHO05D011781 5.5e-08 62.4 95 32.6
BraA09t40691Z Brassica rapa HOM05D001456 ORTHO05D011781 7.2e-08 62.0 107 29.9
Lj1g0013696 Lotus japonicus HOM05D001456 ORTHO05D002799 7.2e-08 62.0 108 31.5
SalBow8G4827 Salvia bowleyana HOM05D004262 ORTHO05D004886 7.2e-08 62.0 100 33.0
A09p54270 Brassica napus HOM05D001456 ORTHO05D002799 9.4e-08 61.6 124 28.2
BraA09t40839Z Brassica rapa HOM05D001456 ORTHO05D002799 9.4e-08 61.6 124 28.2
Thhalv10027969m.g Eutrema salsugineum HOM05D001456 ORTHO05D011781 9.4e-08 61.6 94 37.2
Sp5g01180 Schrenkiella parvula HOM05D001456 ORTHO05D002799 9.4e-08 61.6 119 31.1
C08p35340 Brassica napus HOM05D001456 ORTHO05D011781 1.2e-07 61.2 95 31.6
BraA09t40689Z Brassica rapa HOM05D001456 ORTHO05D011781 1.2e-07 61.2 95 31.6
CARHR150710 Cardamine hirsuta HOM05D010352 ORTHO05D012062 1.2e-07 61.2 125 32.8
Migut.H02473 Erythranthe guttata HOM05D004262 ORTHO05D004886 1.2e-07 61.2 100 33.0
Sabra19G0004000 Salix brachista HOM05D004262 ORTHO05D004886 1.2e-07 61.2 100 30.0
Sabra19G0021500 Salix brachista HOM05D004262 ORTHO05D004886 1.2e-07 61.2 100 30.0
Solyc02g088880.1 Solanum lycopersicum HOM05D001456 ORTHO05D002799 1.2e-07 61.2 107 30.8
AL5G20620 Arabidopsis lyrata HOM05D001456 ORTHO05D019698 1.6e-07 60.8 83 39.8
AL8G37840 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 1.6e-07 60.8 128 28.9
MSTRG.23288 Avicennia marina HOM05D004262 ORTHO05D004886 1.6e-07 60.8 100 32.0
BolC8t51127H Brassica oleracea HOM05D001456 ORTHO05D011781 1.6e-07 60.8 95 31.6
Sopen02g033560 Solanum pennellii HOM05D001456 ORTHO05D002799 1.6e-07 60.8 107 30.8
Glyma.04G216400 Glycine max HOM05D004262 ORTHO05D004886 2.1e-07 60.5 92 34.8
PSO675G3917 Papaver somniferum HOM05D004262 ORTHO05D004886 2.1e-07 60.5 100 34.0
Zm00001eb139430 Zea mays HOM05D004262 ORTHO05D004886 2.1e-07 60.5 100 31.0
A03p55270 Brassica napus HOM05D001636 ORTHO05D009134 2.7e-07 60.1 92 34.8
A09p52620 Brassica napus HOM05D001456 ORTHO05D011781 2.7e-07 60.1 115 27.8
BraA03t14586Z Brassica rapa HOM05D001636 ORTHO05D009134 2.7e-07 60.1 92 34.8
Cfa002810 Carpinus fangiana HOM05D004262 ORTHO05D004886 3.6e-07 59.7 100 31.0
ECA234G3594 Erigeron canadensis HOM05D004262 ORTHO05D004886 3.6e-07 59.7 100 30.0
Aa31LG11G2160 Aethionema arabicum HOM05D001456 ORTHO05D002799 4.7e-07 59.3 102 31.4
A02p41480 Brassica napus HOM05D001456 ORTHO05D002799 4.7e-07 59.3 102 30.4
BraA02t09089Z Brassica rapa HOM05D001456 ORTHO05D002799 4.7e-07 59.3 102 30.4
Lsat_1_v5_gn_5_101740 Lactuca sativa HOM05D004262 ORTHO05D004886 4.7e-07 59.3 100 30.0
Oeu002630.1 Olea europaea HOM05D004262 ORTHO05D004886 4.7e-07 59.3 100 30.0
Potri.019G004000 Populus trichocarpa HOM05D004262 ORTHO05D004886 4.7e-07 59.3 100 30.0
BcaC02g09040 Brassica carinata HOM05D010965 ORTHO05D016023 6.1e-07 58.9 215 22.8
ClCG02G000740 Citrullus lanatus HOM05D004262 ORTHO05D004886 6.1e-07 58.9 100 31.0
Ciclev10024792m.g Citrus clementina HOM05D004262 ORTHO05D004886 8.0e-07 58.5 100 29.0
Sp2g24430 Schrenkiella parvula HOM05D001456 ORTHO05D002799 8.0e-07 58.5 92 32.6
CiPaw.04G086800 Carya illinoinensis HOM05D004262 ORTHO05D004886 1.0e-06 58.2 100 29.0
SMO200G0216 Selaginella moellendorffii HOM05D001456 ORTHO05D004886 1.0e-06 58.2 93 33.3
SGA_v2.0_scaffold2G01256 Striga asiatica HOM05D004262 ORTHO05D004886 1.0e-06 58.2 100 32.0
BcaB07g29753 Brassica carinata HOM05D004262 ORTHO05D004886 1.4e-06 57.8 92 30.4
HPP92_002646 Vanilla planifolia HOM05D004262 ORTHO05D004886 1.4e-06 57.8 100 32.0
A04p04180 Brassica napus HOM05D010965 ORTHO05D024278 1.8e-06 57.4 91 35.2
BolC4t25347H Brassica oleracea HOM05D010965 ORTHO05D016023 1.8e-06 57.4 215 22.8
BraA04t16134Z Brassica rapa HOM05D010965 ORTHO05D024278 1.8e-06 57.4 91 35.2
CARHR274920 Cardamine hirsuta HOM05D001456 ORTHO05D002799 1.8e-06 57.4 107 27.1
Thhalv10006264m.g Eutrema salsugineum HOM05D001456 ORTHO05D011781 2.3e-06 57.0 98 34.7
C04p37700 Brassica napus HOM05D010965 ORTHO05D016023 3.0e-06 56.6 203 22.2
C05p42720 Brassica napus HOM05D001456 ORTHO05D041427 3.0e-06 56.6 207 25.1
BolC5t32995H Brassica oleracea HOM05D001456 ORTHO05D041427 3.0e-06 56.6 207 25.1
BolC7t45437H Brassica oleracea HOM05D001636 ORTHO05D009134 3.0e-06 56.6 96 32.3
BraA04t16224Z Brassica rapa HOM05D010965 ORTHO05D016023 3.0e-06 56.6 215 22.8
Carub.0006s0826 Capsella rubella HOM05D004262 ORTHO05D004886 3.0e-06 56.6 100 29.0
TPR.G12210 Trifolium pratense HOM05D004262 ORTHO05D004886 3.9e-06 56.2 101 30.7
AT3G61090 Arabidopsis thaliana HOM05D001456 ORTHO05D011781 6.7e-06 55.5 96 29.2
AL5G43300 Arabidopsis lyrata HOM05D001456 ORTHO05D011781 8.8e-06 55.1 96 30.2


User provided reference genes

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