Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p50430 Brassica napus HOM05D003213 ORTHO05D003693 7.8e-55 216.9 107 100.0
BcaB05g23861 Brassica carinata HOM05D003213 ORTHO05D003693 5.3e-11 71.2 54 66.7
FvH4_5g01870 Fragaria vesca HOM05D003213 ORTHO05D003693 1.5e-10 69.7 59 59.3
FAN04G1619 Fragaria x ananassa HOM05D003213 ORTHO05D003693 1.5e-10 69.7 59 59.3
FAN08G1588 Fragaria x ananassa HOM05D003213 ORTHO05D003693 1.5e-10 69.7 59 59.3
FAN13G0859 Fragaria x ananassa HOM05D003213 ORTHO05D003693 1.5e-10 69.7 59 59.3
RcHm_v2.0_Chr7g0198651 Rosa chinensis HOM05D003213 ORTHO05D003693 7.6e-10 67.4 55 60.0
Dinv37666 Davidia involucrata HOM05D003213 ORTHO05D003693 1.0e-09 67.0 53 58.5
Sabra01G0081400 Salix brachista HOM05D003213 ORTHO05D003693 1.3e-09 66.6 55 58.2
FAN18G3554 Fragaria x ananassa HOM05D003213 ORTHO05D003693 1.7e-09 66.2 59 57.6
Nitab4.5_0005772g0010 Nicotiana tabacum HOM05D003213 ORTHO05D003693 2.2e-09 65.9 49 61.2
Potri.001G107500 Populus trichocarpa HOM05D003213 ORTHO05D003693 3.8e-09 65.1 47 66.0
Sp6g06320 Schrenkiella parvula HOM05D003213 ORTHO05D003693 3.8e-09 65.1 43 72.1
Actinidia14539 Actinidia chinensis HOM05D003213 ORTHO05D003693 4.9e-09 64.7 54 61.1
BcaC03g16372 Brassica carinata HOM05D003213 ORTHO05D003693 4.9e-09 64.7 45 68.9
A02p26370 Brassica napus HOM05D003213 ORTHO05D003693 4.9e-09 64.7 45 68.9
C02p41910 Brassica napus HOM05D003213 ORTHO05D003693 4.9e-09 64.7 45 68.9
BolC2t10224H Brassica oleracea HOM05D003213 ORTHO05D003693 4.9e-09 64.7 45 68.9
BraA02t07639Z Brassica rapa HOM05D003213 ORTHO05D003693 4.9e-09 64.7 45 68.9
EL10Ac7g16147 Beta vulgaris HOM05D003213 ORTHO05D003693 6.5e-09 64.3 84 44.0
ClCG07G007970 Citrullus lanatus HOM05D003213 ORTHO05D003693 6.5e-09 64.3 43 69.8
Haze_08903 Corylus avellana HOM05D003213 ORTHO05D003693 6.5e-09 64.3 62 54.8
CsaV3_4G006050 Cucumis sativus L. HOM05D003213 ORTHO05D003693 6.5e-09 64.3 43 69.8
Dinv38980 Davidia involucrata HOM05D003213 ORTHO05D003693 6.5e-09 64.3 48 62.5
MBI13_g09223_MAGBIO Magnolia biondii HOM05D003213 ORTHO05D003693 6.5e-09 64.3 70 48.6
Nitab4.5_0003440g0010 Nicotiana tabacum HOM05D003213 ORTHO05D003693 6.5e-09 64.3 49 61.2
Aqoxy7G00384 Aquilegia oxysepala HOM05D003213 ORTHO05D003693 8.4e-09 63.9 52 57.7
MSTRG.25587 Avicennia marina HOM05D003213 ORTHO05D003693 8.4e-09 63.9 54 57.4
Cfa020619 Carpinus fangiana HOM05D003213 ORTHO05D003693 8.4e-09 63.9 48 60.4
CiPaw.10G013100 Carya illinoinensis HOM05D003213 ORTHO05D003693 8.4e-09 63.9 48 62.5
Haze_09386 Corylus avellana HOM05D003213 ORTHO05D003693 8.4e-09 63.9 48 60.4
QL12p017921 Quercus lobata HOM05D003213 ORTHO05D003693 8.4e-09 63.9 47 63.8
Rhsim07G0092300 Rhododendron simsii HOM05D003213 ORTHO05D003693 8.4e-09 63.9 69 49.3
Sed0001180 Sechium edule HOM05D003213 ORTHO05D003693 8.4e-09 63.9 43 69.8
SGA_v2.0_scaffold253G45113 Striga asiatica HOM05D003213 ORTHO05D003693 8.4e-09 63.9 54 55.6
Actinidia02027 Actinidia chinensis HOM05D003213 ORTHO05D003693 1.1e-08 63.5 44 65.9
Ah.02g112600 Amaranthus hybridus HOM05D003213 ORTHO05D003693 1.4e-08 63.2 38 73.7
CARHR255490 Cardamine hirsuta HOM05D003213 ORTHO05D003693 1.4e-08 63.2 60 58.3
Cfa012141 Carpinus fangiana HOM05D003213 ORTHO05D003693 1.4e-08 63.2 43 67.4
PGSC0003DMG400005187 Solanum tuberosum HOM05D003213 ORTHO05D003693 1.4e-08 63.2 48 62.5
vmacro13943 Vaccinium macrocarpon HOM05D003213 ORTHO05D003693 1.4e-08 63.2 58 56.9
CAN.G308.26 Capsicum annuum HOM05D003213 ORTHO05D003693 1.9e-08 62.8 43 67.4
MD06G1076900 Malus domestica HOM05D003213 ORTHO05D003693 1.9e-08 62.8 44 68.2
MELO3C016344.2 Cucumis melo HOM05D003213 ORTHO05D003693 2.5e-08 62.4 45 71.1
DCAR_000683 Daucus carota HOM05D003213 ORTHO05D003693 2.5e-08 62.4 52 57.7
Hma1.2p1_0514F.1_g169810 Hydrangea macrophylla HOM05D003213 ORTHO05D003693 2.5e-08 62.4 51 58.8
Peaxi162Scf00269g01517 Petunia axillaris HOM05D003213 ORTHO05D003693 2.5e-08 62.4 63 52.4
Prupe.5G094900 Prunus persica HOM05D003213 ORTHO05D003693 2.5e-08 62.4 44 65.9
MSTRG.12004 Avicennia marina HOM05D003213 ORTHO05D003693 3.2e-08 62.0 44 65.9
CSS0033515 Camellia sinensis var. sinensis HOM05D003213 ORTHO05D003693 3.2e-08 62.0 43 67.4
CSS0024384 Camellia sinensis var. sinensis HOM05D003213 ORTHO05D003693 4.2e-08 61.6 39 71.8
CANSAT25G0208 Cannabis sativa HOM05D003213 ORTHO05D003693 4.2e-08 61.6 63 52.4
CANSAT80G2251 Cannabis sativa HOM05D003213 ORTHO05D003693 4.2e-08 61.6 63 52.4
CAN.G100.2 Capsicum annuum HOM05D003213 ORTHO05D003693 4.2e-08 61.6 43 65.1
ECA236G2163 Erigeron canadensis HOM05D003213 ORTHO05D003693 4.2e-08 61.6 53 58.5
HanXRQChr01g0021601 Helianthus annuus HOM05D003213 ORTHO05D003693 4.2e-08 61.6 58 58.6
Nn3g20000 Nelumbo nucifera HOM05D003213 ORTHO05D003693 4.2e-08 61.6 65 53.8
TWI36G0215 Tripterygium wilfordii HOM05D003213 ORTHO05D003693 4.2e-08 61.6 59 55.9
GSVIVG01019026001 Vitis vinifera HOM05D003213 ORTHO05D003693 4.2e-08 61.6 43 65.1
GSVIVG01019802001 Vitis vinifera HOM05D003213 ORTHO05D003693 4.2e-08 61.6 43 65.1
Cpa.g.sc87.99 Carica papaya HOM05D003213 ORTHO05D003693 5.5e-08 61.2 63 50.8
Hund04873 Selenicereus undatus HOM05D003213 ORTHO05D003693 5.5e-08 61.2 43 65.1
Cc08_g14280 Coffea canephora HOM05D003213 ORTHO05D003693 7.1e-08 60.8 50 54.0
Atru.chr12.1280 Acer truncatum HOM05D003213 ORTHO05D003693 9.3e-08 60.5 44 59.1
Atru.chr12.1289 Acer truncatum HOM05D003213 ORTHO05D003693 9.3e-08 60.5 44 59.1
Lsat_1_v5_gn_7_82800 Lactuca sativa HOM05D003213 ORTHO05D003693 9.3e-08 60.5 51 56.9
MD14G1098300 Malus domestica HOM05D003213 ORTHO05D003693 9.3e-08 60.5 40 70.0
Aa31LG9G11070 Aethionema arabicum HOM05D003213 ORTHO05D003693 1.2e-07 60.1 51 58.8
DCAR_006753 Daucus carota HOM05D003213 ORTHO05D003693 1.2e-07 60.1 56 53.6
Migut.A00798 Erythranthe guttata HOM05D003213 ORTHO05D003693 1.2e-07 60.1 71 50.7
Lj4A550T46 Lonicera japonica HOM05D003213 ORTHO05D003693 1.2e-07 60.1 51 60.8
Lj4A578T54 Lonicera japonica HOM05D003213 ORTHO05D003693 1.2e-07 60.1 51 60.8
Lalb_Chr09g0325531 Lupinus albus HOM05D003213 ORTHO05D003693 1.2e-07 60.1 49 59.2
PSO478G0071 Papaver somniferum HOM05D003213 ORTHO05D003693 1.2e-07 60.1 50 58.0
PSO782G4767 Papaver somniferum HOM05D003213 ORTHO05D003693 1.2e-07 60.1 50 58.0
Manes.01G064600 Manihot esculenta HOM05D003213 ORTHO05D003693 1.6e-07 59.7 44 63.6
Manes.02G024800 Manihot esculenta HOM05D003213 ORTHO05D003693 1.6e-07 59.7 43 65.1
Solyc06g064890.4 Solanum lycopersicum HOM05D003213 ORTHO05D003693 1.6e-07 59.7 48 56.2
Sopen06g023410 Solanum pennellii HOM05D003213 ORTHO05D003693 1.6e-07 59.7 48 56.2
AUR62001667 Chenopodium quinoa HOM05D003213 ORTHO05D003693 2.1e-07 59.3 51 54.9
Glyma.05G205200 Glycine max HOM05D003213 ORTHO05D003693 2.1e-07 59.3 42 64.3
Glyma.08G012100 Glycine max HOM05D003213 ORTHO05D003693 2.1e-07 59.3 42 64.3
Lalb_Chr16g0377171 Lupinus albus HOM05D003213 ORTHO05D003693 2.1e-07 59.3 40 67.5
Oeu028567.1 Olea europaea HOM05D003213 ORTHO05D003693 3.5e-07 58.5 49 63.3
arahy.Tifrunner.gnm1.ann1.4S7XPI Arachis hypogaea HOM05D003213 ORTHO05D003693 4.6e-07 58.2 44 59.1
arahy.Tifrunner.gnm1.ann1.91GX53 Arachis hypogaea HOM05D003213 ORTHO05D003693 4.6e-07 58.2 44 59.1
AUR62019502 Chenopodium quinoa HOM05D003213 ORTHO05D003693 4.6e-07 58.2 36 75.0
AUR62020113 Chenopodium quinoa HOM05D003213 ORTHO05D003693 4.6e-07 58.2 36 75.0
FAN16G2260 Fragaria x ananassa HOM05D003213 ORTHO05D003693 4.6e-07 58.2 51 52.9
RcHm_v2.0_Chr5g0060921 Rosa chinensis HOM05D003213 ORTHO05D003693 6.0e-07 57.8 51 52.9
HPP92_025983 Vanilla planifolia HOM05D003213 ORTHO05D003693 6.0e-07 57.8 44 68.2
Zm00001eb071210 Zea mays HOM05D003213 ORTHO05D003693 6.0e-07 57.8 51 56.9
arahy.Tifrunner.gnm1.ann1.JK8X7C Arachis hypogaea HOM05D003213 ORTHO05D003693 7.9e-07 57.4 57 54.4
Ciclev10021533m.g Citrus clementina HOM05D003213 ORTHO05D003693 7.9e-07 57.4 42 64.3
Nn8g38712 Nelumbo nucifera HOM05D003213 ORTHO05D003693 7.9e-07 57.4 43 60.5
Os10g0397200 Oryza sativa ssp. japonica HOM05D003213 ORTHO05D003693 1.0e-06 57.0 60 53.3
Phvul.002G287100 Phaseolus vulgaris HOM05D003213 ORTHO05D003693 1.3e-06 56.6 56 51.8
VMungo0251G2562 Vigna mungo HOM05D003213 ORTHO05D003693 1.3e-06 56.6 56 51.8
Zm00001eb268290 Zea mays HOM05D003213 ORTHO05D003693 1.3e-06 56.6 46 60.9
Lalb_Chr16g0389821 Lupinus albus HOM05D003213 ORTHO05D003693 1.8e-06 56.2 66 48.5
PSO339G0315 Papaver somniferum HOM05D003213 ORTHO05D003693 2.3e-06 55.8 56 48.2
SEGI_09725 Sequoiadendron giganteum HOM05D003213 ORTHO05D003693 2.3e-06 55.8 71 49.3
TAR629G0228 Trochodendron aralioides HOM05D003213 ORTHO05D003693 2.3e-06 55.8 35 74.3
Gohir.A11G021800 Gossypium hirsutum HOM05D003213 ORTHO05D003693 3.0e-06 55.5 43 58.1
Gohir.D11G021500 Gossypium hirsutum HOM05D003213 ORTHO05D003693 3.0e-06 55.5 43 58.1
Gorai.007G022800 Gossypium raimondii HOM05D003213 ORTHO05D003693 3.0e-06 55.5 43 58.1
Sc07g0009620 Simmondsia chinensis HOM05D003213 ORTHO05D003693 3.0e-06 55.5 54 51.9
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 3.0e-06 55.5 44 56.8
Eucgr.D01884 Eucalyptus grandis HOM05D003213 ORTHO05D003693 3.9e-06 55.1 59 45.8
TPR.G6680 Trifolium pratense HOM05D003213 ORTHO05D003693 3.9e-06 55.1 45 62.2
MSTRG.24318 Avicennia marina HOM05D003213 ORTHO05D003693 5.1e-06 54.7 42 61.9
PGR031G0486 Punica granatum HOM05D003213 ORTHO05D003693 5.1e-06 54.7 58 50.0
SalBow5G2014 Salvia bowleyana HOM05D003213 ORTHO05D003693 5.1e-06 54.7 75 44.0
SalBow5G2552 Salvia bowleyana HOM05D003213 ORTHO05D003693 5.1e-06 54.7 75 44.0
Thecc.03G274900 Theobroma cacao HOM05D003213 ORTHO05D003693 5.1e-06 54.7 44 59.1
arahy.Tifrunner.gnm1.ann1.QX30GY Arachis hypogaea HOM05D003213 ORTHO05D003693 6.7e-06 54.3 57 52.6
C02p00810 Brassica napus HOM05D012204 ORTHO05D020101 6.7e-06 54.3 44 59.1
BolC2t06079H Brassica oleracea HOM05D012204 ORTHO05D020101 6.7e-06 54.3 44 59.1
Glyma.11G025300 Glycine max HOM05D003213 ORTHO05D003693 6.7e-06 54.3 58 50.0
Gohir.A08G179800 Gossypium hirsutum HOM05D003213 ORTHO05D003693 6.7e-06 54.3 43 55.8
Gohir.D08G198600 Gossypium hirsutum HOM05D003213 ORTHO05D003693 6.7e-06 54.3 43 55.8
Gorai.004G209400 Gossypium raimondii HOM05D003213 ORTHO05D003693 6.7e-06 54.3 43 55.8
COL.COLO4_18522 Corchorus olitorius HOM05D003213 ORTHO05D003693 8.7e-06 53.9 43 60.5
Duzib084G0581 Durio zibethinus HOM05D003213 ORTHO05D003693 8.7e-06 53.9 43 60.5
Migut.J01798 Erythranthe guttata HOM05D003213 ORTHO05D003693 8.7e-06 53.9 39 61.5
unitig_8.g3787 Utricularia gibba HOM05D003213 ORTHO05D003693 8.7e-06 53.9 42 59.5


User provided reference genes

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