Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 9.4e-112 407.1 248 100.0
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 8.3e-92 340.9 222 97.3
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 1.9e-80 303.1 168 94.0
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 2.1e-79 299.7 168 93.5
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 6.2e-79 298.1 165 94.5
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 1.1e-75 287.3 179 86.0
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 3.2e-75 285.8 179 85.5
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 1.1e-70 270.8 182 80.8
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 1.4e-70 270.4 165 86.1
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 2.0e-69 266.5 168 83.9
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 9.9e-69 264.2 168 82.7
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 6.4e-68 261.5 173 79.2
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 1.1e-67 260.8 182 76.4
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 2.4e-67 259.6 168 81.0
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 5.4e-67 258.5 158 84.8
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 7.1e-67 258.1 168 81.0
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 2.1e-66 256.5 160 84.4
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 2.1e-66 256.5 160 84.4
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 1.0e-65 254.2 160 83.1
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 5.1e-65 251.9 169 79.3
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 6.6e-65 251.5 160 84.4
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 6.8e-62 241.5 160 81.2
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 3.9e-57 225.7 183 66.7
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 2.1e-55 219.9 183 65.0
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 2.9e-52 209.5 161 66.5
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 2.9e-52 209.5 174 62.1
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 1.9e-51 206.8 174 62.1
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 4.2e-51 205.7 168 63.1
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 9.3e-51 204.5 174 62.6
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 1.2e-50 204.1 156 66.7
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 2.1e-50 203.4 158 64.6
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 2.7e-50 203.0 168 63.7
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 2.7e-50 203.0 158 64.6
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 2.7e-50 203.0 156 66.7
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 3.5e-50 202.6 161 63.4
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 6.0e-50 201.8 158 63.9
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 7.8e-50 201.4 158 63.9
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 1.0e-49 201.1 152 67.8
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 1.7e-49 200.3 172 59.3
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 2.3e-49 199.9 155 67.1
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 3.9e-49 199.1 158 63.3
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 5.1e-49 198.7 174 56.9
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 6.6e-49 198.4 158 62.7
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 6.6e-49 198.4 175 57.7
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 6.6e-49 198.4 175 57.7
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 8.7e-49 198.0 167 62.3
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 1.9e-48 196.8 161 63.4
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 2.5e-48 196.4 174 56.3
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 3.3e-48 196.1 175 57.1
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 4.3e-48 195.7 174 57.5
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 4.3e-48 195.7 167 59.3
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 4.3e-48 195.7 174 58.6
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 7.3e-48 194.9 174 57.5
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 7.3e-48 194.9 174 58.6
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 7.3e-48 194.9 149 65.1
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 1.3e-47 194.1 169 59.2
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 1.6e-47 193.7 173 60.7
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 1.6e-47 193.7 159 62.3
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 1.6e-47 193.7 159 62.3
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 2.1e-47 193.4 174 58.6
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 2.1e-47 193.4 174 57.5
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 2.1e-47 193.4 167 61.7
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 2.1e-47 193.4 174 57.5
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 3.6e-47 192.6 174 58.6
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 4.8e-47 192.2 174 58.6
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 6.2e-47 191.8 173 59.5
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 6.2e-47 191.8 175 57.1
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 8.1e-47 191.4 173 57.2
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 8.1e-47 191.4 173 59.5
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 8.1e-47 191.4 162 63.0
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 8.1e-47 191.4 162 63.0
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 8.1e-47 191.4 169 59.2
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 8.1e-47 191.4 169 59.2
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 1.4e-46 190.7 174 57.5
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 1.8e-46 190.3 168 58.9
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 4.0e-46 189.1 168 58.3
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 4.0e-46 189.1 156 64.7
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 5.3e-46 188.7 173 57.2
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 6.9e-46 188.3 168 56.5
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 6.9e-46 188.3 174 56.9
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 9.0e-46 188.0 161 59.6
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 1.2e-45 187.6 158 59.5
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 1.2e-45 187.6 169 59.2
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 2.0e-45 186.8 162 61.1
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 2.6e-45 186.4 174 56.3
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 2.6e-45 186.4 167 60.5
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 3.4e-45 186.0 173 56.1
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 5.8e-45 185.3 181 55.8
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 5.8e-45 185.3 159 63.5
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 9.9e-45 184.5 161 60.2
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 1.7e-44 183.7 178 56.2
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 1.7e-44 183.7 150 65.3
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 2.9e-44 183.0 174 55.7
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 4.9e-44 182.2 196 51.0
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 8.4e-44 181.4 165 57.6
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 8.4e-44 181.4 174 54.6
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 1.9e-43 180.3 145 65.5
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 2.4e-43 179.9 154 58.4
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 7.1e-43 178.3 161 57.1
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 7.1e-43 178.3 161 57.1
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 9.3e-43 177.9 155 58.7
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 9.3e-43 177.9 171 55.0
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 9.3e-43 177.9 156 59.6
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 1.6e-42 177.2 175 54.9
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 2.1e-42 176.8 158 58.2
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 2.1e-42 176.8 142 62.0
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 2.7e-42 176.4 153 59.5
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 3.5e-42 176.0 161 57.1
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 3.5e-42 176.0 177 53.7
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 4.6e-42 175.6 176 54.5
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 4.6e-42 175.6 174 57.5
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 4.6e-42 175.6 153 61.4
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 6.0e-42 175.3 153 58.2
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 1.0e-41 174.5 174 52.9
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 1.3e-41 174.1 158 57.0
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 3.9e-41 172.6 158 55.1
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 5.1e-41 172.2 170 54.7
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 6.7e-41 171.8 165 55.8
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 8.7e-41 171.4 174 53.4
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.1e-40 171.0 153 60.1
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 1.5e-40 170.6 148 58.8
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 2.5e-40 169.9 184 51.6
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 4.3e-40 169.1 158 55.1
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 5.6e-40 168.7 176 54.5
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.1e-39 166.8 146 58.2
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.1e-39 166.8 146 58.2
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 4.8e-39 165.6 155 57.4
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 6.2e-39 165.2 149 57.0
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.4e-38 164.1 174 52.3
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 2.0e-37 160.2 156 53.2
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 3.4e-37 159.5 137 65.0
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 4.5e-37 159.1 156 56.4
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 5.5e-35 152.1 141 58.2
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 3.0e-33 146.4 141 57.4
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 8.7e-33 144.8 172 45.9
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 2.5e-32 143.3 152 54.6
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 1.2e-29 134.4 160 49.4
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 1.1e-19 101.3 162 39.5
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 5.5e-19 99.0 156 40.4
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 1.0e-17 94.7 84 58.3
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 1.4e-17 94.4 91 54.9
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.8e-17 94.0 177 34.5
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 5.7e-16 89.0 156 36.5
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 1.3e-15 87.8 159 34.6
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 8.2e-15 85.1 112 45.5
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 1.1e-14 84.7 127 37.8
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.1e-14 82.8 156 35.3
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.6e-10 70.9 101 42.6
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 5.7e-08 62.4 167 29.3
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 3.1e-06 56.6 41 68.3


User provided reference genes

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