Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 1.0e-151 540.0 279 100.0
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 1.0e-151 540.0 279 100.0
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 5.2e-143 511.1 281 96.4
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 4.6e-139 498.0 285 94.0
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 2.9e-133 478.8 329 81.5
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 9.2e-132 473.8 282 87.9
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 7.8e-131 470.7 282 87.6
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 1.2e-128 463.4 282 86.2
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 1.2e-128 463.4 282 85.8
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 2.1e-128 462.6 282 86.2
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 8.1e-128 460.7 282 85.8
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 1.7e-125 453.0 282 83.3
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 1.3e-122 443.4 271 87.8
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 1.9e-121 439.5 282 80.9
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 6.2e-120 434.5 285 81.1
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 1.4e-119 433.3 285 81.4
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 1.4e-119 433.3 285 80.7
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 3.1e-119 432.2 285 81.1
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 4.0e-119 431.8 285 80.7
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 5.2e-119 431.4 285 81.1
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 5.2e-119 431.4 285 80.4
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 1.5e-118 429.9 285 80.0
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 5.8e-118 427.9 285 80.4
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 9.9e-118 427.2 285 79.3
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 1.3e-117 426.8 285 79.3
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 4.9e-117 424.9 285 80.0
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 6.4e-117 424.5 271 85.2
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 9.3e-116 420.6 275 83.3
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 6.0e-115 417.9 282 75.5
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 6.0e-115 417.9 282 75.5
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 7.8e-115 417.5 282 75.5
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 3.9e-114 415.2 277 79.8
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 5.1e-114 414.8 282 75.5
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 1.1e-113 413.7 282 77.0
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 1.1e-113 413.7 282 75.5
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 1.1e-113 413.7 282 75.5
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 1.1e-113 413.7 282 76.6
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 1.5e-113 413.3 251 87.6
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 3.3e-113 412.1 282 75.2
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 4.3e-113 411.8 282 75.5
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 5.6e-113 411.4 282 74.8
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 9.6e-113 410.6 282 74.8
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 1.6e-112 409.8 282 74.8
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 2.8e-112 409.1 282 74.5
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 6.2e-112 407.9 282 74.1
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 8.1e-112 407.5 282 75.2
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 8.1e-112 407.5 282 74.1
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.4e-111 406.8 282 74.1
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 1.8e-111 406.4 282 73.8
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.8e-111 406.4 282 75.2
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 1.8e-111 406.4 282 74.8
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.0e-111 405.2 282 75.2
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 5.3e-111 404.8 282 74.5
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 6.9e-111 404.4 282 74.8
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 6.9e-111 404.4 282 74.1
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 6.9e-111 404.4 282 74.1
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 6.9e-111 404.4 282 74.5
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.2e-110 403.7 282 74.5
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 1.2e-110 403.7 282 74.1
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 1.2e-110 403.7 282 73.8
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 2.6e-110 402.5 282 73.4
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 5.8e-110 401.4 282 74.5
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 9.9e-110 400.6 282 74.5
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 9.9e-110 400.6 282 73.8
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 6.4e-109 397.9 282 71.6
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 1.1e-108 397.1 282 72.3
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 1.4e-108 396.7 282 73.4
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 1.9e-108 396.4 282 71.6
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 3.2e-108 395.6 282 72.0
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 4.2e-108 395.2 282 71.3
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 4.2e-108 395.2 282 71.6
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 7.1e-108 394.4 282 72.3
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 1.6e-107 393.3 282 70.9
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 1.6e-107 393.3 282 70.6
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 3.5e-107 392.1 282 70.6
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 4.6e-107 391.7 282 70.6
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 6.0e-107 391.3 282 71.6
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 6.0e-107 391.3 282 70.2
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 7.9e-107 391.0 282 70.6
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 3.0e-106 389.0 293 69.3
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 3.9e-106 388.7 282 72.0
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 5.1e-106 388.3 271 73.4
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 2.5e-105 386.0 282 71.6
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 3.3e-105 385.6 340 62.1
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 4.3e-105 385.2 282 70.6
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 7.4e-105 384.4 282 70.9
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.3e-104 383.6 284 69.7
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 1.3e-104 383.6 282 70.6
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 4.8e-104 381.7 282 68.1
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 8.1e-104 380.9 282 69.9
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 1.8e-103 379.8 282 70.9
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 3.1e-103 379.0 282 69.9
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 3.1e-103 379.0 282 68.4
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 3.1e-103 379.0 282 69.1
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 5.3e-103 378.3 277 71.8
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.2e-102 377.1 286 68.9
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 1.5e-102 376.7 282 69.1
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 4.5e-102 375.2 285 69.8
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 7.6e-102 374.4 283 70.3
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 2.9e-101 372.5 319 62.1
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 4.9e-101 371.7 280 69.3
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 4.9e-101 371.7 288 67.7
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 8.4e-101 370.9 294 66.0
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 2.4e-100 369.4 266 73.3
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 2.4e-100 369.4 266 72.9
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 4.2e-100 368.6 282 67.4
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 4.2e-100 368.6 282 68.8
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 5.5e-100 368.2 282 67.0
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 2.7e-99 365.9 282 69.1
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 3.5e-99 365.5 282 67.4
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 7.9e-99 364.4 282 66.7
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 6.7e-98 361.3 286 65.0
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 8.7e-98 360.9 266 69.5
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 8.7e-98 360.9 282 66.0
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 4.3e-97 358.6 282 63.8
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 4.3e-97 358.6 282 63.8
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 1.3e-96 357.1 312 60.9
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 2.1e-96 356.3 250 79.2
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 8.1e-96 354.4 279 67.0
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 3.1e-95 352.4 279 66.3
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 9.0e-95 350.9 242 75.6
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 3.4e-94 349.0 266 68.4
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 7.6e-94 347.8 295 64.7
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 1.3e-93 347.1 286 62.9
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 2.5e-92 342.8 266 66.9
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 3.2e-92 342.4 249 69.5
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 5.5e-92 341.7 272 65.8
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 9.3e-92 340.9 282 66.7
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 5.1e-90 335.1 282 64.2
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 8.7e-90 334.3 284 62.3
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 1.5e-89 333.6 289 62.6
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.5e-86 323.6 282 63.5
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 5.9e-86 321.6 275 68.7
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 7.6e-86 321.2 305 56.4
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.3e-85 320.5 302 56.6
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 2.9e-85 319.3 279 63.4
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 2.5e-84 316.2 283 57.2
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 4.6e-83 312.0 338 55.0
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.8e-82 310.1 259 66.0
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 1.8e-82 310.1 230 67.8
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 5.7e-81 305.1 277 58.5
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 1.4e-79 300.4 215 73.5
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 5.9e-78 295.0 215 69.8
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 3.2e-76 289.3 225 67.1
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 2.3e-74 283.1 269 57.2
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 1.0e-69 267.7 285 52.6
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 1.0e-66 257.7 237 59.5
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 3.8e-61 239.2 215 56.3
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 1.3e-53 214.2 267 51.3
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.3e-45 187.6 207 55.6
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 6.5e-45 185.3 278 46.0
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 5.5e-44 182.2 177 59.3
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 9.5e-44 181.4 185 52.4
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.0e-41 173.7 323 41.2
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 3.4e-41 172.9 174 55.2
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 1.4e-39 167.5 121 66.1
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.9e-36 157.1 122 66.4
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.8e-31 140.6 181 47.0
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 2.3e-21 107.1 221 32.1
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 5.0e-21 105.9 275 37.1
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 3.3e-20 103.2 86 61.6
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.3e-20 102.8 286 34.3
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 8.9e-18 95.1 63 73.0
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.5e-17 94.4 184 34.2
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 4.1e-15 86.3 121 42.1
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.2e-14 84.7 204 31.9
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 6.0e-14 82.4 95 48.4
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 3.9e-13 79.7 51 80.4
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 6.8e-10 68.9 47 70.2


User provided reference genes

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