Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p46590 Brassica napus HOM05D001817 ORTHO05D028283 3.1e-75 285.0 144 100.0
BcaC03g16785 Brassica carinata HOM05D001817 ORTHO05D001647 8.0e-47 190.7 95 96.8
A02p29320 Brassica napus HOM05D001817 ORTHO05D001647 5.2e-46 188.0 95 95.8
C02p46580 Brassica napus HOM05D001817 ORTHO05D001647 8.9e-46 187.2 95 94.7
A02p29330 Brassica napus HOM05D001817 ORTHO05D001647 1.2e-45 186.8 95 94.7
BcaB07g30432 Brassica carinata HOM05D001817 ORTHO05D001647 7.3e-40 167.5 95 80.0
BcaC03g16784 Brassica carinata HOM05D001817 ORTHO05D001647 4.7e-31 138.3 95 72.6
C02p46550 Brassica napus HOM05D001817 ORTHO05D001647 6.2e-31 137.9 95 72.6
A02p29300 Brassica napus HOM05D001817 ORTHO05D001647 1.8e-30 136.3 95 71.6
BcaB07g30433 Brassica carinata HOM05D001817 ORTHO05D001647 2.4e-30 136.0 95 69.5
BolC2t10708H Brassica oleracea HOM05D001817 ORTHO05D001647 1.7e-17 93.2 56 78.6
BraA02t07960Z Brassica rapa HOM05D001817 ORTHO05D001647 3.0e-17 92.4 56 76.8
Carub.0007s0845 Capsella rubella HOM05D001817 ORTHO05D001647 3.3e-16 89.0 93 53.8
AL7G19750 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 4.3e-16 88.6 92 50.0
BolC1t00680H Brassica oleracea HOM05D001817 ORTHO05D001647 8.1e-15 84.3 98 44.9
AT4G32110 Arabidopsis thaliana HOM05D001817 ORTHO05D001647 2.4e-14 82.8 93 48.4
QL07p000848 Quercus lobata HOM05D001817 ORTHO05D001647 3.1e-14 82.4 97 45.4
QL07p000880 Quercus lobata HOM05D001817 ORTHO05D001647 3.1e-14 82.4 97 45.4
QL12p013638 Quercus lobata HOM05D001817 ORTHO05D001647 3.1e-14 82.4 100 43.0
Thhalv10001075m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 5.3e-14 81.6 92 47.8
Sp2g10660 Schrenkiella parvula HOM05D001817 ORTHO05D001647 9.0e-14 80.9 92 47.8
BraA01t00587Z Brassica rapa HOM05D001817 ORTHO05D001647 2.0e-13 79.7 89 46.1
Thhalv10027554m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 2.0e-13 79.7 92 48.9
THA.LOC104818605 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 2.0e-13 79.7 92 44.6
THA.LOC104818607 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 2.0e-13 79.7 92 44.6
THA.LOC104818611 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 2.0e-13 79.7 92 44.6
AT4G32105 Arabidopsis thaliana HOM05D001817 ORTHO05D001647 2.6e-13 79.3 93 49.5
Thhalv10027525m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 3.4e-13 79.0 97 44.3
Sp2g10630 Schrenkiella parvula HOM05D001817 ORTHO05D001647 4.5e-13 78.6 93 44.1
Sp7g29900 Schrenkiella parvula HOM05D001817 ORTHO05D001647 7.6e-13 77.8 100 46.0
AL7G19780 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 1.3e-12 77.0 68 52.9
BcaC06g31519 Brassica carinata HOM05D001817 ORTHO05D001647 1.3e-12 77.0 100 42.0
A06p46400 Brassica napus HOM05D001817 ORTHO05D001647 1.3e-12 77.0 100 42.0
BraA06t27504Z Brassica rapa HOM05D001817 ORTHO05D001647 1.3e-12 77.0 100 42.0
C07p29020 Brassica napus HOM05D001817 ORTHO05D001647 3.8e-12 75.5 100 41.0
BolC7t43441H Brassica oleracea HOM05D001817 ORTHO05D001647 3.8e-12 75.5 100 41.0
CARHR240020 Cardamine hirsuta HOM05D001817 ORTHO05D001647 1.4e-11 73.6 93 45.2
A01p06200 Brassica napus HOM05D001817 ORTHO05D001647 5.4e-11 71.6 78 42.3
BolC1t00681H Brassica oleracea HOM05D001817 ORTHO05D001647 7.1e-11 71.2 93 38.7
BcaNung03138 Brassica carinata HOM05D001817 ORTHO05D001647 2.1e-10 69.7 76 44.7
C01p06840 Brassica napus HOM05D001817 ORTHO05D001647 2.1e-10 69.7 93 37.6
Lalb_Chr12g0205711 Lupinus albus HOM05D001817 ORTHO05D001647 3.5e-10 68.9 92 39.1
Gorai.013G068000 Gossypium raimondii HOM05D001817 ORTHO05D001647 4.6e-10 68.6 87 41.4
Lalb_Chr12g0205721 Lupinus albus HOM05D001817 ORTHO05D001647 4.6e-10 68.6 86 38.4
C01p07500 Brassica napus HOM05D001817 ORTHO05D001647 6.0e-10 68.2 89 41.6
Haze_21486 Corylus avellana HOM05D001817 ORTHO05D001647 6.0e-10 68.2 90 38.9
BolC2t10709H Brassica oleracea HOM05D038554 ORTHO05D028283 1.0e-09 67.4 35 100.0
Gohir.A13G061900 Gossypium hirsutum HOM05D001817 ORTHO05D001647 1.3e-09 67.0 87 41.4
Sed0012505 Sechium edule HOM05D001817 ORTHO05D001647 1.3e-09 67.0 97 39.2
Manes.02G218600 Manihot esculenta HOM05D001817 ORTHO05D001647 1.8e-09 66.6 94 35.1
Ciclev10009917m.g Citrus clementina HOM05D001817 ORTHO05D001647 2.3e-09 66.2 90 42.2
Duzib052G0237 Durio zibethinus HOM05D001817 ORTHO05D001647 2.3e-09 66.2 88 39.8
Phvul.010G051700 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 2.3e-09 66.2 84 41.7
Thecc.02G154600 Theobroma cacao HOM05D001817 ORTHO05D001647 2.3e-09 66.2 77 41.6
TWI34G0730 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 2.3e-09 66.2 88 38.6
FAN27G3307 Fragaria x ananassa HOM05D000140 ORTHO05D000087 3.0e-09 65.9 97 38.1
AL7G19790 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 3.9e-09 65.5 93 40.9
BraA02t07963Z Brassica rapa HOM05D038554 ORTHO05D028283 3.9e-09 65.5 35 94.3
QL07p000821 Quercus lobata HOM05D001817 ORTHO05D001647 3.9e-09 65.5 109 38.5
Gohir.D13G060100 Gossypium hirsutum HOM05D001817 ORTHO05D001647 5.1e-09 65.1 87 40.2
Lalb_Chr13g0294691 Lupinus albus HOM05D001817 ORTHO05D001647 5.1e-09 65.1 80 36.2
VMungo0331G0739 Vigna mungo HOM05D001817 ORTHO05D001647 5.1e-09 65.1 86 38.4
BcaC09g51999 Brassica carinata HOM05D000316 ORTHO05D001978 6.7e-09 64.7 62 48.4
A01p06190 Brassica napus HOM05D001817 ORTHO05D001647 6.7e-09 64.7 62 48.4
C01p06830 Brassica napus HOM05D001817 ORTHO05D001647 6.7e-09 64.7 62 48.4
Thecc.02G154500 Theobroma cacao HOM05D001817 ORTHO05D001647 6.7e-09 64.7 93 36.6
Medtr2g438190 Medicago truncatula HOM05D001817 ORTHO05D001647 8.7e-09 64.3 92 33.7
FvH4_2g27480 Fragaria vesca HOM05D001817 ORTHO05D001647 1.1e-08 63.9 99 37.4
SpUn0983_0020 Schrenkiella parvula HOM05D001817 ORTHO05D001647 1.1e-08 63.9 69 49.3
Medtr1g048300 Medicago truncatula HOM05D001817 ORTHO05D001647 1.5e-08 63.5 92 33.7
Phvul.007G030200 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.5e-08 63.5 86 38.4
FAN15G2483 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.9e-08 63.2 97 36.1
FAN24G1722 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.9e-08 63.2 97 37.1
Lj3g0023162 Lotus japonicus HOM05D001817 ORTHO05D001647 1.9e-08 63.2 86 36.0
FAN20G0384 Fragaria x ananassa HOM05D000140 ORTHO05D000087 2.5e-08 62.8 90 36.7
Phvul.007G030500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 2.5e-08 62.8 86 37.2
C01p07490 Brassica napus HOM05D001817 ORTHO05D001647 3.3e-08 62.4 78 38.5
PGR044G0606 Punica granatum HOM05D001817 ORTHO05D001647 3.3e-08 62.4 85 34.1
Cpa.g.sc187.6 Carica papaya HOM05D001817 ORTHO05D001647 4.3e-08 62.0 94 39.4
FvH4_2g28690 Fragaria vesca HOM05D001817 ORTHO05D001647 4.3e-08 62.0 90 36.7
FAN24G1684 Fragaria x ananassa HOM05D001817 ORTHO05D001647 4.3e-08 62.0 82 36.6
TPR.G19813 Trifolium pratense HOM05D001817 ORTHO05D001647 4.3e-08 62.0 85 36.5
Lj5g0009014 Lotus japonicus HOM05D001817 ORTHO05D001647 5.6e-08 61.6 87 36.8
Medtr6g445140 Medicago truncatula HOM05D001817 ORTHO05D001647 7.4e-08 61.2 80 40.0
Potri.004G167900 Populus trichocarpa HOM05D001817 ORTHO05D001647 7.4e-08 61.2 89 38.2
arahy.Tifrunner.gnm1.ann1.P3P3AQ Arachis hypogaea HOM05D001817 ORTHO05D001647 9.6e-08 60.8 94 37.2
A01p06730 Brassica napus HOM05D001817 ORTHO05D001647 9.6e-08 60.8 78 38.5
FAN27G0609 Fragaria x ananassa HOM05D001817 ORTHO05D001647 9.6e-08 60.8 95 34.7
Lalb_Chr13g0294721 Lupinus albus HOM05D001817 ORTHO05D001647 9.6e-08 60.8 93 33.3
TPR.G3270 Trifolium pratense HOM05D001817 ORTHO05D001647 9.6e-08 60.8 87 40.2
arahy.Tifrunner.gnm1.ann1.2D36J9 Arachis hypogaea HOM05D001817 ORTHO05D001647 1.3e-07 60.5 72 40.3
BcaC06g34407 Brassica carinata HOM05D001817 ORTHO05D001647 1.3e-07 60.5 75 38.7
Thhalv10001150m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 1.3e-07 60.5 68 47.1
Glyma.10G113700 Glycine max HOM05D001817 ORTHO05D001647 1.3e-07 60.5 79 39.2
BraA02t07962Z Brassica rapa HOM05D038554 ORTHO05D028283 1.6e-07 60.1 40 85.0
ClCG05G016690 Citrullus lanatus HOM05D001817 ORTHO05D001647 1.6e-07 60.1 90 34.4
Lalb_Chr21g0316231 Lupinus albus HOM05D001817 ORTHO05D001647 1.6e-07 60.1 83 36.1
Actinidia22324 Actinidia chinensis HOM05D001817 ORTHO05D001647 2.1e-07 59.7 85 40.0
Lj4g0004287 Lotus japonicus HOM05D001817 ORTHO05D001647 2.1e-07 59.7 84 34.5
Duzib150G1023 Durio zibethinus HOM05D001817 ORTHO05D001647 2.8e-07 59.3 68 45.6
VMungo0331G0458 Vigna mungo HOM05D001817 ORTHO05D001647 2.8e-07 59.3 86 36.0
FAN27G2147 Fragaria x ananassa HOM05D001817 ORTHO05D001647 3.7e-07 58.9 87 37.9
Prupe.1G484000 Prunus persica HOM05D001817 ORTHO05D001647 3.7e-07 58.9 93 35.5
FvH4_2g28680 Fragaria vesca HOM05D001817 ORTHO05D001647 4.8e-07 58.5 98 33.7
Glyma.17G218100 Glycine max HOM05D001817 ORTHO05D001647 4.8e-07 58.5 93 36.6
Glyma.08G316300 Glycine max HOM05D001817 ORTHO05D001647 6.2e-07 58.2 89 39.3
Medtr0100s0140 Medicago truncatula HOM05D001817 ORTHO05D001647 6.2e-07 58.2 90 37.8
COL.COLO4_18892 Corchorus olitorius HOM05D001817 ORTHO05D001647 8.1e-07 57.8 84 39.3
CsaV3_3G046190 Cucumis sativus L. HOM05D001817 ORTHO05D001647 8.1e-07 57.8 68 38.2
Psat0s3990g0120 Pisum sativum HOM05D001817 ORTHO05D001647 8.1e-07 57.8 85 35.3
RcHm_v2.0_Chr6g0297461 Rosa chinensis HOM05D001817 ORTHO05D001647 8.1e-07 57.8 68 39.7
Eucgr.C01626 Eucalyptus grandis HOM05D001817 ORTHO05D001647 1.1e-06 57.4 68 41.2
VMungo0464G1777 Vigna mungo HOM05D001817 ORTHO05D001647 1.1e-06 57.4 85 35.3
arahy.Tifrunner.gnm1.ann1.J1V55D Arachis hypogaea HOM05D001817 ORTHO05D001647 1.4e-06 57.0 94 34.0
arahy.Tifrunner.gnm1.ann1.SUQM4P Arachis hypogaea HOM05D001817 ORTHO05D001647 1.4e-06 57.0 94 34.0
MD15G1128900 Malus domestica HOM05D001817 ORTHO05D001647 1.4e-06 57.0 68 42.6
Psat6g048880 Pisum sativum HOM05D001817 ORTHO05D001647 1.4e-06 57.0 76 38.2
VMungo0464G1322 Vigna mungo HOM05D001817 ORTHO05D001647 1.4e-06 57.0 87 33.3
arahy.Tifrunner.gnm1.ann1.H9XFHY Arachis hypogaea HOM05D001817 ORTHO05D001647 1.8e-06 56.6 93 32.3
Glyma.10G271300 Glycine max HOM05D001817 ORTHO05D001647 1.8e-06 56.6 93 32.3
Medtr1g049240 Medicago truncatula HOM05D001817 ORTHO05D001647 1.8e-06 56.6 93 34.4
Sed0018471 Sechium edule HOM05D001817 ORTHO05D001647 2.4e-06 56.2 87 29.9
Phvul.002G171300 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 4.0e-06 55.5 87 36.8
Potri.006G257600 Populus trichocarpa HOM05D001817 ORTHO05D001647 4.0e-06 55.5 74 36.5
TWI63G0410 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 4.0e-06 55.5 66 40.9
Atru.chr7.2474 Acer truncatum HOM05D001817 ORTHO05D001647 5.3e-06 55.1 93 33.3
Aqoxy5G03160 Aquilegia oxysepala HOM05D001817 ORTHO05D001647 5.3e-06 55.1 84 36.9
CiPaw.08G009300 Carya illinoinensis HOM05D001817 ORTHO05D001647 5.3e-06 55.1 86 32.6
TPR.G9069 Trifolium pratense HOM05D001817 ORTHO05D001647 5.3e-06 55.1 90 31.1
TAR622G1058 Trochodendron aralioides HOM05D001817 ORTHO05D001647 5.3e-06 55.1 90 37.8
VMungo0720G0118 Vigna mungo HOM05D001817 ORTHO05D001647 5.3e-06 55.1 82 34.1
CsaV3_6G045660 Cucumis sativus L. HOM05D001817 ORTHO05D001647 6.9e-06 54.7 90 34.4
arahy.Tifrunner.gnm1.ann1.07A84U Arachis hypogaea HOM05D001817 ORTHO05D001647 9.0e-06 54.3 92 29.3


User provided reference genes

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