Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p46580 Brassica napus HOM05D001817 ORTHO05D001647 3.8e-63 244.6 117 100.0
BcaC03g16785 Brassica carinata HOM05D001817 ORTHO05D001647 3.2e-62 241.5 117 98.3
A02p29320 Brassica napus HOM05D001817 ORTHO05D001647 4.7e-61 237.7 117 96.6
A02p29330 Brassica napus HOM05D001817 ORTHO05D001647 1.0e-60 236.5 117 95.7
BcaB07g30432 Brassica carinata HOM05D001817 ORTHO05D001647 3.6e-53 211.5 115 80.9
C02p46590 Brassica napus HOM05D001817 ORTHO05D028283 4.2e-46 188.0 95 94.7
BcaB07g30433 Brassica carinata HOM05D001817 ORTHO05D001647 1.7e-42 176.0 113 73.5
BcaC03g16784 Brassica carinata HOM05D001817 ORTHO05D001647 1.8e-41 172.6 113 74.3
C02p46550 Brassica napus HOM05D001817 ORTHO05D001647 2.4e-41 172.2 113 74.3
A02p29300 Brassica napus HOM05D001817 ORTHO05D001647 7.0e-41 170.6 113 73.5
BolC2t10708H Brassica oleracea HOM05D001817 ORTHO05D001647 2.6e-27 125.6 74 78.4
BraA02t07960Z Brassica rapa HOM05D001817 ORTHO05D001647 4.4e-27 124.8 74 77.0
AL7G19750 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 1.3e-23 113.2 118 50.8
BolC1t00680H Brassica oleracea HOM05D001817 ORTHO05D001647 2.5e-22 109.0 124 46.8
Carub.0007s0845 Capsella rubella HOM05D001817 ORTHO05D001647 3.3e-22 108.6 122 51.6
AT4G32110 Arabidopsis thaliana HOM05D001817 ORTHO05D001647 3.6e-21 105.1 119 48.7
Thhalv10001075m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 3.6e-21 105.1 119 47.9
Sp2g10660 Schrenkiella parvula HOM05D001817 ORTHO05D001647 3.6e-21 105.1 119 50.4
Sp2g10630 Schrenkiella parvula HOM05D001817 ORTHO05D001647 4.7e-21 104.8 120 43.3
A06p46400 Brassica napus HOM05D001817 ORTHO05D001647 1.4e-20 103.2 120 45.0
BraA06t27504Z Brassica rapa HOM05D001817 ORTHO05D001647 1.4e-20 103.2 120 45.0
AL7G19780 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 3.1e-20 102.1 94 53.2
AT4G32105 Arabidopsis thaliana HOM05D001817 ORTHO05D001647 3.1e-20 102.1 119 49.6
C07p29020 Brassica napus HOM05D001817 ORTHO05D001647 4.0e-20 101.7 120 44.2
BolC7t43441H Brassica oleracea HOM05D001817 ORTHO05D001647 4.0e-20 101.7 120 44.2
BraA01t00587Z Brassica rapa HOM05D001817 ORTHO05D001647 1.2e-19 100.1 116 44.0
Thhalv10027554m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 1.2e-19 100.1 117 47.9
QL12p013638 Quercus lobata HOM05D001817 ORTHO05D001647 5.8e-19 97.8 115 44.3
QL07p000848 Quercus lobata HOM05D001817 ORTHO05D001647 9.8e-19 97.1 112 46.4
QL07p000880 Quercus lobata HOM05D001817 ORTHO05D001647 9.8e-19 97.1 112 46.4
AT4G32100 Arabidopsis thaliana HOM05D001817 ORTHO05D001647 1.3e-18 96.7 116 47.4
CARHR240020 Cardamine hirsuta HOM05D001817 ORTHO05D001647 2.2e-18 95.9 122 46.7
Sp7g29900 Schrenkiella parvula HOM05D001817 ORTHO05D001647 2.2e-18 95.9 125 44.8
BcaC06g31519 Brassica carinata HOM05D001817 ORTHO05D001647 3.7e-18 95.1 120 43.3
Thhalv10027525m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 8.3e-18 94.0 122 41.8
THA.LOC104818605 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.1e-17 93.6 118 40.7
THA.LOC104818607 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.1e-17 93.6 118 40.7
THA.LOC104818611 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.1e-17 93.6 118 40.7
AL7G19790 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 1.9e-17 92.8 116 45.7
BcaNung03138 Brassica carinata HOM05D001817 ORTHO05D001647 9.2e-17 90.5 116 41.4
BolC1t00681H Brassica oleracea HOM05D001817 ORTHO05D001647 1.2e-16 90.1 116 39.7
A01p06200 Brassica napus HOM05D001817 ORTHO05D001647 1.6e-16 89.7 116 38.8
C01p06840 Brassica napus HOM05D001817 ORTHO05D001647 3.5e-16 88.6 116 38.8
BcaC06g34407 Brassica carinata HOM05D001817 ORTHO05D001647 1.0e-15 87.0 95 43.2
BcaC09g51999 Brassica carinata HOM05D000316 ORTHO05D001978 3.9e-15 85.1 89 44.9
A01p06190 Brassica napus HOM05D001817 ORTHO05D001647 3.9e-15 85.1 89 44.9
C01p06830 Brassica napus HOM05D001817 ORTHO05D001647 3.9e-15 85.1 89 44.9
Thhalv10001150m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 6.6e-15 84.3 89 48.3
TWI34G0730 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 6.6e-15 84.3 115 38.3
SpUn0983_0020 Schrenkiella parvula HOM05D001817 ORTHO05D001647 8.6e-15 84.0 97 46.4
Duzib052G0237 Durio zibethinus HOM05D001817 ORTHO05D001647 1.5e-14 83.2 109 42.2
Gorai.013G068000 Gossypium raimondii HOM05D001817 ORTHO05D001647 1.9e-14 82.8 109 41.3
Manes.02G218600 Manihot esculenta HOM05D001817 ORTHO05D001647 2.5e-14 82.4 120 38.3
Lalb_Chr12g0205721 Lupinus albus HOM05D001817 ORTHO05D001647 3.3e-14 82.0 113 38.1
Gohir.A13G061900 Gossypium hirsutum HOM05D001817 ORTHO05D001647 5.6e-14 81.3 109 41.3
Gohir.D13G060100 Gossypium hirsutum HOM05D001817 ORTHO05D001647 1.6e-13 79.7 109 40.4
Ciclev10009917m.g Citrus clementina HOM05D001817 ORTHO05D001647 2.8e-13 79.0 114 42.1
Prupe.1G484100 Prunus persica HOM05D001817 ORTHO05D001647 4.7e-13 78.2 117 35.9
C01p07500 Brassica napus HOM05D001817 ORTHO05D001647 8.1e-13 77.4 103 41.7
FvH4_2g28690 Fragaria vesca HOM05D001817 ORTHO05D001647 8.1e-13 77.4 114 36.8
QL07p000821 Quercus lobata HOM05D001817 ORTHO05D001647 8.1e-13 77.4 117 39.3
Phvul.010G051700 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.1e-12 77.0 107 40.2
Thecc.02G154500 Theobroma cacao HOM05D001817 ORTHO05D001647 1.1e-12 77.0 108 38.0
arahy.Tifrunner.gnm1.ann1.P3P3AQ Arachis hypogaea HOM05D001817 ORTHO05D001647 1.8e-12 76.3 111 37.8
arahy.Tifrunner.gnm1.ann1.2D36J9 Arachis hypogaea HOM05D001817 ORTHO05D001647 2.3e-12 75.9 89 40.4
Thecc.02G154600 Theobroma cacao HOM05D001817 ORTHO05D001647 2.3e-12 75.9 87 41.4
Cpa.g.sc187.6 Carica papaya HOM05D001817 ORTHO05D001647 3.1e-12 75.5 117 40.2
Haze_21486 Corylus avellana HOM05D001817 ORTHO05D001647 5.2e-12 74.7 113 37.2
Prupe.1G484000 Prunus persica HOM05D001817 ORTHO05D001647 5.2e-12 74.7 117 36.8
VMungo0331G0458 Vigna mungo HOM05D001817 ORTHO05D001647 5.2e-12 74.7 106 37.7
Lalb_Chr12g0205711 Lupinus albus HOM05D001817 ORTHO05D001647 6.8e-12 74.3 117 38.5
Lalb_Chr13g0294691 Lupinus albus HOM05D001817 ORTHO05D001647 6.8e-12 74.3 98 35.7
Sed0012505 Sechium edule HOM05D001817 ORTHO05D001647 8.9e-12 73.9 112 36.6
FAN20G0384 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.2e-11 73.6 114 37.7
FAN27G3307 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.2e-11 73.6 114 37.7
Lalb_Chr21g0316231 Lupinus albus HOM05D001817 ORTHO05D001647 1.2e-11 73.6 103 38.8
Phvul.007G030200 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.2e-11 73.6 109 37.6
RcHm_v2.0_Chr6g0297461 Rosa chinensis HOM05D001817 ORTHO05D001647 1.5e-11 73.2 92 40.2
FvH4_2g27480 Fragaria vesca HOM05D001817 ORTHO05D001647 2.0e-11 72.8 114 38.6
Medtr6g445140 Medicago truncatula HOM05D001817 ORTHO05D001647 2.0e-11 72.8 112 38.4
Phvul.007G030500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 2.0e-11 72.8 109 36.7
Eucgr.C01626 Eucalyptus grandis HOM05D001817 ORTHO05D001647 2.6e-11 72.4 92 40.2
FAN24G1684 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.6e-11 72.4 99 36.4
Sp2g10650 Schrenkiella parvula HOM05D001817 ORTHO05D001647 2.6e-11 72.4 113 39.8
FAN27G2147 Fragaria x ananassa HOM05D001817 ORTHO05D001647 3.4e-11 72.0 111 37.8
VMungo0331G0739 Vigna mungo HOM05D001817 ORTHO05D001647 3.4e-11 72.0 109 37.6
FAN15G2483 Fragaria x ananassa HOM05D000140 ORTHO05D000087 4.4e-11 71.6 112 37.5
FAN24G1722 Fragaria x ananassa HOM05D000140 ORTHO05D000087 4.4e-11 71.6 112 38.4
Lj5g0009014 Lotus japonicus HOM05D001817 ORTHO05D001647 4.4e-11 71.6 106 36.8
Medtr2g438190 Medicago truncatula HOM05D001817 ORTHO05D001647 4.4e-11 71.6 116 32.8
Medtr1g048300 Medicago truncatula HOM05D001817 ORTHO05D001647 5.8e-11 71.2 106 34.0
Atru.chr6.250 Acer truncatum HOM05D001817 ORTHO05D001647 7.5e-11 70.9 112 33.9
TWI63G0410 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 7.5e-11 70.9 88 40.9
Actinidia22324 Actinidia chinensis HOM05D001817 ORTHO05D001647 9.9e-11 70.5 91 40.7
Glyma.08G316300 Glycine max HOM05D001817 ORTHO05D001647 9.9e-11 70.5 112 41.1
Lj3g0023162 Lotus japonicus HOM05D001817 ORTHO05D001647 9.9e-11 70.5 104 37.5
ClCG05G016690 Citrullus lanatus HOM05D001817 ORTHO05D001647 2.2e-10 69.3 112 33.9
Lj4g0004287 Lotus japonicus HOM05D001817 ORTHO05D001647 2.2e-10 69.3 106 34.0
Psat6g048880 Pisum sativum HOM05D001817 ORTHO05D001647 3.7e-10 68.6 89 41.6
Glyma.10G271300 Glycine max HOM05D001817 ORTHO05D001647 4.9e-10 68.2 113 33.6
VMungo0540G2413 Vigna mungo HOM05D001817 ORTHO05D001647 4.9e-10 68.2 116 34.5
Medtr0100s0140 Medicago truncatula HOM05D001817 ORTHO05D001647 6.4e-10 67.8 118 34.7
Atru.chr12.564 Acer truncatum HOM05D001817 ORTHO05D001647 8.3e-10 67.4 113 32.7
Glyma.08G357100 Glycine max HOM05D001817 ORTHO05D001647 8.3e-10 67.4 108 37.0
Psat0s3990g0120 Pisum sativum HOM05D001817 ORTHO05D001647 8.3e-10 67.4 104 36.5
Glyma.10G113700 Glycine max HOM05D001817 ORTHO05D001647 1.1e-09 67.0 98 39.8
Potri.004G167900 Populus trichocarpa HOM05D001817 ORTHO05D001647 1.1e-09 67.0 108 36.1
arahy.Tifrunner.gnm1.ann1.07A84U Arachis hypogaea HOM05D001817 ORTHO05D001647 1.4e-09 66.6 117 30.8
arahy.Tifrunner.gnm1.ann1.H9XFHY Arachis hypogaea HOM05D001817 ORTHO05D001647 1.4e-09 66.6 111 32.4
TPR.G19813 Trifolium pratense HOM05D001817 ORTHO05D001647 1.4e-09 66.6 109 33.0
CiPaw.08G009300 Carya illinoinensis HOM05D001817 ORTHO05D001647 1.9e-09 66.2 107 34.6
TPR.G3270 Trifolium pratense HOM05D001817 ORTHO05D001647 1.9e-09 66.2 114 38.6
PGR044G0606 Punica granatum HOM05D001817 ORTHO05D001647 2.4e-09 65.9 104 31.7
FAN27G0609 Fragaria x ananassa HOM05D001817 ORTHO05D001647 3.2e-09 65.5 118 31.4
Glyma.17G218100 Glycine max HOM05D001817 ORTHO05D001647 3.2e-09 65.5 116 35.3
Aqoxy5G03160 Aquilegia oxysepala HOM05D001817 ORTHO05D001647 4.1e-09 65.1 107 36.4
arahy.Tifrunner.gnm1.ann1.36N5BX Arachis hypogaea HOM05D001817 ORTHO05D001647 4.1e-09 65.1 93 34.4
CsaV3_3G046190 Cucumis sativus L. HOM05D001817 ORTHO05D001647 4.1e-09 65.1 89 36.0
TPR.G9069 Trifolium pratense HOM05D001817 ORTHO05D001647 4.1e-09 65.1 114 29.8
Atru.chr7.2474 Acer truncatum HOM05D001817 ORTHO05D001647 5.4e-09 64.7 112 35.7
arahy.Tifrunner.gnm1.ann1.J1V55D Arachis hypogaea HOM05D001817 ORTHO05D001647 5.4e-09 64.7 109 33.0
arahy.Tifrunner.gnm1.ann1.SUQM4P Arachis hypogaea HOM05D001817 ORTHO05D001647 5.4e-09 64.7 109 33.0
Phvul.006G043500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 7.1e-09 64.3 125 35.2
FvH4_2g28680 Fragaria vesca HOM05D001817 ORTHO05D001647 9.2e-09 63.9 113 31.9
COL.COLO4_18892 Corchorus olitorius HOM05D001817 ORTHO05D001647 1.6e-08 63.2 106 37.7
VMungo0720G3158 Vigna mungo HOM05D001817 ORTHO05D001647 1.6e-08 63.2 113 33.6
arahy.Tifrunner.gnm1.ann1.27HQCZ Arachis hypogaea HOM05D001817 ORTHO05D001647 2.7e-08 62.4 93 33.3
DCAR_004364 Daucus carota HOM05D001817 ORTHO05D001647 2.7e-08 62.4 117 37.6
Potri.006G257600 Populus trichocarpa HOM05D001817 ORTHO05D001647 2.7e-08 62.4 106 34.0
Sed0018471 Sechium edule HOM05D001817 ORTHO05D001647 2.7e-08 62.4 110 30.0
VMungo0464G1322 Vigna mungo HOM05D001817 ORTHO05D001647 2.7e-08 62.4 119 31.1
FAN24G2789 Fragaria x ananassa HOM05D001817 ORTHO05D001647 3.5e-08 62.0 116 36.2
Manes.16G124600 Manihot esculenta HOM05D001817 ORTHO05D001647 3.5e-08 62.0 114 36.0
Solyc10g054673.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 3.5e-08 62.0 100 41.0
TAR622G1058 Trochodendron aralioides HOM05D001817 ORTHO05D001647 3.5e-08 62.0 111 36.9
MD15G1128900 Malus domestica HOM05D001817 ORTHO05D001647 4.6e-08 61.6 80 42.5
arahy.Tifrunner.gnm1.ann1.QWA25E Arachis hypogaea HOM05D001817 ORTHO05D001647 6.0e-08 61.2 110 31.8
A01p06740 Brassica napus HOM05D001817 ORTHO05D001647 6.0e-08 61.2 74 39.2
Lalb_Chr13g0294721 Lupinus albus HOM05D001817 ORTHO05D001647 6.0e-08 61.2 111 30.6
Medtr1g049240 Medicago truncatula HOM05D001817 ORTHO05D001647 7.8e-08 60.8 114 33.3
Sabra06G0201500 Salix brachista HOM05D001817 ORTHO05D001647 7.8e-08 60.8 115 33.9
Solyc10g054677.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 7.8e-08 60.8 100 41.0
Phvul.002G171300 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.0e-07 60.5 111 33.3
VMungo0720G0118 Vigna mungo HOM05D001817 ORTHO05D001647 1.0e-07 60.5 101 35.6
MELO3C033004.2 Cucumis melo HOM05D001817 ORTHO05D001647 1.3e-07 60.1 110 31.8
MD08G1079500 Malus domestica HOM05D001817 ORTHO05D001647 1.3e-07 60.1 114 33.3
Potri.009G129400 Populus trichocarpa HOM05D001817 ORTHO05D001647 1.3e-07 60.1 99 34.3
QL02p021022 Quercus lobata HOM05D001817 ORTHO05D001647 1.3e-07 60.1 89 38.2
Sc03g0006280 Simmondsia chinensis HOM05D001817 ORTHO05D001647 1.3e-07 60.1 110 34.5
TAR622G0422 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.3e-07 60.1 90 38.9
Duzib150G1023 Durio zibethinus HOM05D001817 ORTHO05D001647 1.7e-07 59.7 87 41.4
VMungo0464G1777 Vigna mungo HOM05D001817 ORTHO05D001647 1.7e-07 59.7 104 32.7
Phvul.009G216600 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 2.3e-07 59.3 113 32.7
CsaV3_6G045660 Cucumis sativus L. HOM05D001817 ORTHO05D001647 3.0e-07 58.9 112 33.0
Eucgr.C02739 Eucalyptus grandis HOM05D001817 ORTHO05D001647 3.0e-07 58.9 104 32.7
arahy.Tifrunner.gnm1.ann1.8W5KIC Arachis hypogaea HOM05D001817 ORTHO05D001647 3.9e-07 58.5 109 31.2
arahy.Tifrunner.gnm1.ann1.IFW6MY Arachis hypogaea HOM05D001817 ORTHO05D001647 3.9e-07 58.5 125 28.0
Lalb_Chr03g0036441 Lupinus albus HOM05D001817 ORTHO05D001647 3.9e-07 58.5 114 33.3
FvH4_2g28712 Fragaria vesca HOM05D001817 ORTHO05D001647 5.1e-07 58.2 90 36.7
Medtr8g042530 Medicago truncatula HOM05D001817 ORTHO05D001647 5.1e-07 58.2 113 31.9
ClCG05G016680 Citrullus lanatus HOM05D001817 ORTHO05D001647 6.6e-07 57.8 113 33.6
Psat0s2453g0080 Pisum sativum HOM05D001817 ORTHO05D001647 6.6e-07 57.8 121 33.9
Glyma.10G114100 Glycine max HOM05D001817 ORTHO05D001647 8.6e-07 57.4 99 35.4
VMungo0720G1259 Vigna mungo HOM05D001817 ORTHO05D001647 8.6e-07 57.4 115 32.2
Medtr2g063010 Medicago truncatula HOM05D001817 ORTHO05D001647 1.1e-06 57.0 111 31.5
Phvul.007G239600 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.1e-06 57.0 107 35.5
Atru.chr7.2473 Acer truncatum HOM05D001817 ORTHO05D001647 1.5e-06 56.6 112 33.0
HPP92_021712 Vanilla planifolia HOM05D001817 ORTHO05D001647 1.5e-06 56.6 118 32.2
Sed0003642 Sechium edule HOM05D001817 ORTHO05D001647 1.9e-06 56.2 112 33.0
Lj4g0014854 Lotus japonicus HOM05D001817 ORTHO05D001647 2.5e-06 55.8 112 30.4
Phvul.009G216700 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 2.5e-06 55.8 105 30.5
HPP92_015931 Vanilla planifolia HOM05D001817 ORTHO05D001647 2.5e-06 55.8 93 36.6
MBI07_g02003_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 3.3e-06 55.5 89 32.6
Sed0003760 Sechium edule HOM05D001817 ORTHO05D001647 3.3e-06 55.5 110 27.3
Sed0025130 Sechium edule HOM05D001817 ORTHO05D001647 3.3e-06 55.5 109 31.2
HPP92_021690 Vanilla planifolia HOM05D001817 ORTHO05D001647 3.3e-06 55.5 118 32.2
arahy.Tifrunner.gnm1.ann1.DUNV2U Arachis hypogaea HOM05D001817 ORTHO05D001647 4.3e-06 55.1 107 31.8
Phvul.004G057100 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 4.3e-06 55.1 113 36.3
RcHm_v2.0_Chr6g0286461 Rosa chinensis HOM05D001817 ORTHO05D001647 5.6e-06 54.7 89 34.8
Sabra09G0098900 Salix brachista HOM05D001817 ORTHO05D001647 5.6e-06 54.7 108 32.4
arahy.Tifrunner.gnm1.ann1.XI4PYL Arachis hypogaea HOM05D001817 ORTHO05D001647 7.3e-06 54.3 107 31.8
Glyma.20G204300 Glycine max HOM05D001817 ORTHO05D001647 7.3e-06 54.3 115 32.2
MD08G1151500 Malus domestica HOM05D001817 ORTHO05D001647 7.3e-06 54.3 110 30.0
RcHm_v2.0_Chr6g0297491 Rosa chinensis HOM05D001817 ORTHO05D001647 9.5e-06 53.9 69 40.6


User provided reference genes

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