Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p46230 Brassica napus HOM05D002285 ORTHO05D009255 1.3e-37 159.5 97 100.0
A02p29150 Brassica napus HOM05D002285 ORTHO05D009255 1.3e-32 142.9 96 91.7
BcaC03g16748 Brassica carinata HOM05D002285 ORTHO05D009255 1.6e-30 136.0 86 98.8
BolC2t10678H Brassica oleracea HOM05D002285 ORTHO05D009255 1.6e-30 136.0 86 98.8
BcaC06g31551 Brassica carinata HOM05D002285 ORTHO05D009255 6.7e-29 130.6 96 66.7
Sp2g10370 Schrenkiella parvula HOM05D002285 ORTHO05D009255 3.3e-28 128.3 96 80.2
BcaC06g34433 Brassica carinata HOM05D002285 ORTHO05D009255 1.2e-25 119.8 97 80.4
C07p28510 Brassica napus HOM05D002285 ORTHO05D009255 1.2e-25 119.8 97 80.4
BolC7t43391H Brassica oleracea HOM05D002285 ORTHO05D009255 1.2e-25 119.8 97 80.4
Carub.0008s0269 Capsella rubella HOM05D002285 ORTHO05D009255 5.8e-25 117.5 97 80.4
AT5G45420 Arabidopsis thaliana HOM05D002285 ORTHO05D009255 3.8e-24 114.8 97 77.3
BraA06t27534Z Brassica rapa HOM05D002285 ORTHO05D009255 3.8e-24 114.8 100 60.0
A06p46600 Brassica napus HOM05D002285 ORTHO05D009255 7.1e-23 110.5 100 58.0
THA.LOC104806190 Tarenaya hassleriana HOM05D002285 ORTHO05D009255 1.2e-22 109.8 99 59.6
CARHR176650 Cardamine hirsuta HOM05D002285 ORTHO05D009255 1.6e-22 109.4 98 77.6
Aa31LG9G7580 Aethionema arabicum HOM05D002285 ORTHO05D009255 9.6e-20 100.1 98 70.4
Cpa.g.sc516.1 Carica papaya HOM05D002285 ORTHO05D009255 3.7e-19 98.2 98 51.0
Manes.15G172700 Manihot esculenta HOM05D002285 ORTHO05D009255 9.0e-18 93.6 96 53.1
Gorai.003G179800 Gossypium raimondii HOM05D002285 ORTHO05D009255 3.4e-17 91.7 94 51.1
Thecc.03G234200 Theobroma cacao HOM05D002285 ORTHO05D009255 5.8e-17 90.9 94 47.9
Duzib068G0948 Durio zibethinus HOM05D002285 ORTHO05D009255 1.0e-16 90.1 94 47.9
Potri.001G147000 Populus trichocarpa HOM05D002285 ORTHO05D009255 1.3e-16 89.7 96 51.0
Gohir.A03G002800 Gossypium hirsutum HOM05D002285 ORTHO05D009255 2.2e-16 89.0 91 51.6
Sed0018690 Sechium edule HOM05D002285 ORTHO05D009255 6.5e-16 87.4 95 46.3
Phvul.002G269900 Phaseolus vulgaris HOM05D002285 ORTHO05D009255 8.4e-16 87.0 94 51.1
TWI31G1223 Tripterygium wilfordii HOM05D002285 ORTHO05D009255 1.1e-15 86.7 97 50.5
CsaV3_3G049540 Cucumis sativus L. HOM05D002285 ORTHO05D009255 1.9e-15 85.9 95 47.4
Duzib205G1165 Durio zibethinus HOM05D002285 ORTHO05D009255 1.9e-15 85.9 94 47.9
MELO3C003372.2 Cucumis melo HOM05D002285 ORTHO05D009255 3.2e-15 85.1 95 47.4
Atru.chr6.1776 Acer truncatum HOM05D002285 ORTHO05D009255 7.1e-15 84.0 95 48.4
Cfa014517 Carpinus fangiana HOM05D002285 ORTHO05D009255 9.3e-15 83.6 95 43.2
Gohir.D03G169500 Gossypium hirsutum HOM05D002285 ORTHO05D009255 9.3e-15 83.6 94 48.9
VMungo0251G1000 Vigna mungo HOM05D002285 ORTHO05D009255 1.2e-14 83.2 94 51.1
Prupe.5G047100 Prunus persica HOM05D002285 ORTHO05D009255 2.1e-14 82.4 96 46.9
QL12p007193 Quercus lobata HOM05D002285 ORTHO05D009255 7.9e-14 80.5 100 46.0
Ciclev10032127m.g Citrus clementina HOM05D002285 ORTHO05D009255 1.3e-13 79.7 103 48.5
Glyma.05G189200 Glycine max HOM05D002285 ORTHO05D009255 1.3e-13 79.7 96 49.0
RcHm_v2.0_Chr7g0208261 Rosa chinensis HOM05D002285 ORTHO05D009255 3.9e-13 78.2 96 46.9
CiPaw.12G060200 Carya illinoinensis HOM05D002285 ORTHO05D009255 5.1e-13 77.8 95 43.2
FvH4_5g21140 Fragaria vesca HOM05D002285 ORTHO05D009255 5.1e-13 77.8 96 42.7
FAN08G0952 Fragaria x ananassa HOM05D002285 ORTHO05D009255 5.1e-13 77.8 96 42.7
FAN18G1893 Fragaria x ananassa HOM05D002285 ORTHO05D009255 5.1e-13 77.8 96 42.7
PGR042G0121 Punica granatum HOM05D002285 ORTHO05D009255 5.1e-13 77.8 98 45.9
Eucgr.E00315 Eucalyptus grandis HOM05D002285 ORTHO05D009255 6.7e-13 77.4 107 40.2
TAR375G0607 Trochodendron aralioides HOM05D002285 ORTHO05D009255 8.7e-13 77.0 95 45.3
FAN13G2873 Fragaria x ananassa HOM05D002285 ORTHO05D009255 1.1e-12 76.6 96 42.7
Lalb_Chr07g0184551 Lupinus albus HOM05D002285 ORTHO05D009255 2.5e-12 75.5 100 46.0
Ah.12g053690 Amaranthus hybridus HOM05D002285 ORTHO05D009255 4.3e-12 74.7 100 44.0
Oeu028031.1 Olea europaea HOM05D002285 ORTHO05D009255 4.3e-12 74.7 99 42.4
CSS0042705 Camellia sinensis var. sinensis HOM05D002285 ORTHO05D009255 5.7e-12 74.3 98 45.9
Sc07g0008790 Simmondsia chinensis HOM05D002285 ORTHO05D009255 5.7e-12 74.3 97 46.4
COL.COLO4_17111 Corchorus olitorius HOM05D002285 ORTHO05D009255 7.4e-12 73.9 96 43.8
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 9.7e-12 73.6 95 45.3
Dinv28914 Davidia involucrata HOM05D002285 ORTHO05D009255 1.3e-11 73.2 95 46.3
PGSC0003DMG400024213 Solanum tuberosum HOM05D002285 ORTHO05D009255 1.3e-11 73.2 96 43.8
Ca_17655_v3 Cicer arietinum L. HOM05D002285 ORTHO05D009255 2.8e-11 72.0 96 43.8
Solyc08g077290.1 Solanum lycopersicum HOM05D002285 ORTHO05D009255 2.8e-11 72.0 96 42.7
Sopen08g025870 Solanum pennellii HOM05D002285 ORTHO05D009255 2.8e-11 72.0 96 42.7
Psat7g048120 Pisum sativum HOM05D002285 ORTHO05D009255 4.8e-11 71.2 94 41.5
Hund11271 Selenicereus undatus HOM05D002285 ORTHO05D009255 6.3e-11 70.9 95 42.1
HanXRQChr06g0167311 Helianthus annuus HOM05D002285 ORTHO05D009255 8.2e-11 70.5 101 41.6
Lsat_1_v5_gn_5_187701 Lactuca sativa HOM05D002285 ORTHO05D009255 8.2e-11 70.5 97 38.1
ECA246G1023 Erigeron canadensis HOM05D002285 ORTHO05D009255 1.1e-10 70.1 101 40.6
MD06G1040800 Malus domestica HOM05D002285 ORTHO05D009255 1.1e-10 70.1 96 41.7
Migut.A01004 Erythranthe guttata HOM05D002285 ORTHO05D009255 2.4e-10 68.9 97 39.2
MD16G1268900 Malus domestica HOM05D002285 ORTHO05D009255 2.4e-10 68.9 99 38.4
EL10As14g24089 Beta vulgaris HOM05D002285 ORTHO05D009255 5.3e-10 67.8 99 40.4
Aqoxy3G02523 Aquilegia oxysepala HOM05D002285 ORTHO05D009255 6.9e-10 67.4 97 42.3
Cc08_g01890 Coffea canephora HOM05D002285 ORTHO05D009255 6.9e-10 67.4 96 39.6
Medtr8g093080 Medicago truncatula HOM05D002285 ORTHO05D009255 6.9e-10 67.4 93 43.0
SGA_v2.0_scaffold90G27898 Striga asiatica HOM05D002285 ORTHO05D009255 6.9e-10 67.4 104 39.4
TPR.G37318 Trifolium pratense HOM05D002285 ORTHO05D009255 2.0e-09 65.9 117 37.6
DCAR_024978 Daucus carota HOM05D002285 ORTHO05D009255 2.6e-09 65.5 94 39.4
MSTRG.2508 Avicennia marina HOM05D002285 ORTHO05D009255 3.4e-09 65.1 103 45.6
MBI04_g31973_MAGBIO Magnolia biondii HOM05D002285 ORTHO05D009255 3.4e-09 65.1 92 39.1
SHI10334 Sapria himalayana HOM05D002285 ORTHO05D009255 3.4e-09 65.1 97 38.1
unitig_32.g11505 Utricularia gibba HOM05D002285 ORTHO05D009255 3.4e-09 65.1 100 45.0
CDE06G0617 Ceratophyllum demersum HOM05D002285 ORTHO05D009255 4.5e-09 64.7 96 46.9
Nitab4.5_0006693g0010 Nicotiana tabacum HOM05D002285 ORTHO05D009255 4.5e-09 64.7 92 42.4
Peaxi162Scf00084g00092 Petunia axillaris HOM05D002285 ORTHO05D009255 4.5e-09 64.7 96 42.7
Lj4g0007705 Lotus japonicus HOM05D002285 ORTHO05D009255 5.9e-09 64.3 94 39.4
Nitab4.5_0002055g0110 Nicotiana tabacum HOM05D002285 ORTHO05D009255 5.9e-09 64.3 92 41.3
PSO063G2459 Papaver somniferum HOM05D002285 ORTHO05D009255 7.6e-09 63.9 99 42.4
PSO478G0928 Papaver somniferum HOM05D002285 ORTHO05D009255 7.6e-09 63.9 99 42.4
PSO782G1486 Papaver somniferum HOM05D002285 ORTHO05D009255 7.6e-09 63.9 96 42.7
ATR0706G254 Amborella trichopoda HOM05D002285 ORTHO05D009255 1.9e-07 59.3 98 35.7
CAN.G1445.16 Capsicum annuum HOM05D002285 ORTHO05D009255 2.5e-07 58.9 92 53.3
Rhsim01G0229700 Rhododendron simsii HOM05D002285 ORTHO05D009255 5.5e-07 57.8 40 62.5
Sed0003788 Sechium edule HOM05D002285 ORTHO05D009255 9.3e-07 57.0 40 62.5
Pp3c23_9310 Physcomitrium patens HOM05D002285 ORTHO05D009255 2.1e-06 55.8 92 35.9
Pp3c24_8050 Physcomitrium patens HOM05D002285 ORTHO05D009255 3.6e-06 55.1 94 35.1


User provided reference genes

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