Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p44640 Brassica napus HOM05D000179 ORTHO05D000107 2.0e-146 522.7 330 100.0
BcaC03g16630 Brassica carinata HOM05D000179 ORTHO05D000107 7.8e-122 441.0 285 100.0
BcaC06g31647 Brassica carinata HOM05D000179 ORTHO05D000107 1.8e-81 307.0 291 66.7
BcaC06g34586 Brassica carinata HOM05D000179 ORTHO05D000107 9.1e-78 294.7 292 71.2
C07p26850 Brassica napus HOM05D000179 ORTHO05D000107 9.1e-78 294.7 292 71.2
BraA06t27613Z Brassica rapa HOM05D000179 ORTHO05D000107 7.7e-77 291.6 292 70.9
A06p47430 Brassica napus HOM05D000179 ORTHO05D000107 6.5e-76 288.5 292 70.5
CARHR179110 Cardamine hirsuta HOM05D000179 ORTHO05D000107 7.2e-75 285.0 292 63.0
Carub.0008s0436 Capsella rubella HOM05D000179 ORTHO05D000107 1.6e-74 283.9 296 67.2
Sp2g08990 Schrenkiella parvula HOM05D000179 ORTHO05D000107 2.7e-74 283.1 285 71.9
AT5G44160 Arabidopsis thaliana HOM05D000179 ORTHO05D000107 2.7e-50 203.4 292 62.3
Thhalv10003218m.g Eutrema salsugineum HOM05D000179 ORTHO05D000107 3.0e-49 199.9 292 49.7
AL8G15860 Arabidopsis lyrata HOM05D000179 ORTHO05D000107 5.7e-48 195.7 291 61.5
THA.LOC104826041 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 4.1e-46 189.5 303 45.9
Aa31LG5G3080 Aethionema arabicum HOM05D000179 ORTHO05D000107 1.1e-43 181.4 318 48.7
Carub.0001s0296 Capsella rubella HOM05D000179 ORTHO05D000107 1.4e-38 164.5 333 42.0
AL1G13400 Arabidopsis lyrata HOM05D000179 ORTHO05D000107 1.0e-36 158.3 331 42.9
AT1G03840 Arabidopsis thaliana HOM05D000179 ORTHO05D000107 1.3e-36 157.9 331 40.8
Thhalv10009734m.g Eutrema salsugineum HOM05D000179 ORTHO05D000107 5.6e-35 152.5 331 39.9
A09p68200 Brassica napus HOM05D000179 ORTHO05D000107 2.8e-34 150.2 326 38.3
BraA09t42155Z Brassica rapa HOM05D000179 ORTHO05D000107 2.8e-34 150.2 326 38.3
CARHR003170 Cardamine hirsuta HOM05D000179 ORTHO05D000107 2.3e-33 147.1 331 40.2
Sp1g02700 Schrenkiella parvula HOM05D000179 ORTHO05D000107 3.1e-33 146.7 305 40.7
C08p52640 Brassica napus HOM05D000179 ORTHO05D000107 4.0e-33 146.4 320 38.4
BolC8t52790H Brassica oleracea HOM05D000179 ORTHO05D000107 4.0e-33 146.4 324 37.7
Aa31LG1G9050 Aethionema arabicum HOM05D000179 ORTHO05D000107 2.2e-31 140.6 304 38.5
A10p02370 Brassica napus HOM05D000179 ORTHO05D000107 1.4e-30 137.9 316 38.3
BcaC07g42226 Brassica carinata HOM05D000179 ORTHO05D000107 3.5e-29 133.3 317 36.9
BolC5t28996H Brassica oleracea HOM05D000179 ORTHO05D000107 1.7e-28 131.0 317 41.6
C05p02180 Brassica napus HOM05D000179 ORTHO05D000107 1.1e-27 128.3 317 41.3
BcaC05g24500 Brassica carinata HOM05D000179 ORTHO05D000107 7.5e-24 115.5 304 37.8
BcaC05g24503 Brassica carinata HOM05D000179 ORTHO05D000107 6.0e-21 105.9 292 36.0
COL.COLO4_37679 Corchorus olitorius HOM05D000179 ORTHO05D000107 2.3e-20 104.0 323 33.4
Thecc.02G187400 Theobroma cacao HOM05D000179 ORTHO05D000107 5.1e-20 102.8 314 33.8
Manes.13G141500 Manihot esculenta HOM05D000179 ORTHO05D000107 8.6e-20 102.1 329 31.0
CSS0027321 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 1.5e-19 101.3 310 31.9
Gohir.A03G154300 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.5e-19 101.3 317 32.8
BcaC05g24502 Brassica carinata HOM05D000179 ORTHO05D000107 1.9e-19 100.9 159 44.7
Gohir.D02G177200 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.9e-19 100.9 317 33.4
GSVIVG01020612001 Vitis vinifera HOM05D000179 ORTHO05D000107 1.9e-19 100.9 296 33.4
Gorai.005G198900 Gossypium raimondii HOM05D000179 ORTHO05D000107 2.5e-19 100.5 317 33.4
Haze_13257 Corylus avellana HOM05D000179 ORTHO05D000107 4.3e-19 99.8 301 32.6
QL08p040636 Quercus lobata HOM05D000179 ORTHO05D000107 5.6e-19 99.4 317 32.2
Sabra17G0013300 Salix brachista HOM05D000179 ORTHO05D000107 7.3e-19 99.0 306 32.4
Manes.12G086200 Manihot esculenta HOM05D000179 ORTHO05D000107 1.2e-18 98.2 332 32.5
CiPaw.03G182500 Carya illinoinensis HOM05D000179 ORTHO05D000107 4.7e-18 96.3 313 31.0
MSTRG.15126 Avicennia marina HOM05D000179 ORTHO05D000107 6.2e-18 95.9 316 30.7
Cfa014667 Carpinus fangiana HOM05D000179 ORTHO05D000107 6.2e-18 95.9 301 32.2
TAR627G0370 Trochodendron aralioides HOM05D000179 ORTHO05D000107 2.3e-17 94.0 324 32.1
Potri.017G017100 Populus trichocarpa HOM05D000179 ORTHO05D000107 4.0e-17 93.2 329 31.3
CAN.G1808.6 Capsicum annuum HOM05D000179 ORTHO05D000107 5.2e-17 92.8 339 33.3
Peaxi162Scf00845g00005 Petunia axillaris HOM05D000179 ORTHO05D000107 6.8e-17 92.4 330 32.7
Duzib132G0549 Durio zibethinus HOM05D000179 ORTHO05D000107 2.6e-16 90.5 314 31.2
CiPaw.04G129300 Carya illinoinensis HOM05D000179 ORTHO05D000107 1.3e-15 88.2 317 30.6
Cc05_g07790 Coffea canephora HOM05D000179 ORTHO05D000107 1.7e-15 87.8 308 30.5
Lalb_Chr03g0029671 Lupinus albus HOM05D000179 ORTHO05D000107 2.2e-15 87.4 333 30.3
Potri.007G135000 Populus trichocarpa HOM05D000179 ORTHO05D000107 2.9e-15 87.0 327 31.8
Gohir.A12G139500 Gossypium hirsutum HOM05D000179 ORTHO05D000107 3.7e-15 86.7 314 31.8
Dinv06851 Davidia involucrata HOM05D000179 ORTHO05D000107 4.9e-15 86.3 311 30.2
Lalb_Chr01g0005051 Lupinus albus HOM05D000179 ORTHO05D000107 4.9e-15 86.3 330 30.6
Ca_18917_v3 Cicer arietinum L. HOM05D000179 ORTHO05D000107 6.4e-15 85.9 336 29.8
CSS0046960 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 1.4e-14 84.7 293 30.0
ClCG02G002310 Citrullus lanatus HOM05D000179 ORTHO05D000107 1.9e-14 84.3 294 31.3
SalBow7G0013 Salvia bowleyana HOM05D000179 ORTHO05D000107 2.4e-14 84.0 292 29.5
Gorai.008G155300 Gossypium raimondii HOM05D000179 ORTHO05D000107 4.1e-14 83.2 316 32.0
MBI06_g42696_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 4.1e-14 83.2 318 30.5
MBI06_g45915_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 4.1e-14 83.2 318 30.5
Gohir.D12G144000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 9.2e-14 82.0 316 32.0
Sopen07g027520 Solanum pennellii HOM05D000179 ORTHO05D000107 1.6e-13 81.3 351 30.2
Lalb_Chr19g0135071 Lupinus albus HOM05D000179 ORTHO05D000107 2.1e-13 80.9 330 29.1
Nitab4.5_0022126g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 2.7e-13 80.5 318 28.9
TWI59G0817 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 2.7e-13 80.5 324 29.6
TPR.G14263 Trifolium pratense HOM05D000179 ORTHO05D000107 6.0e-13 79.3 334 30.5
Aqoxy4G00602 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 1.0e-12 78.6 324 31.2
Eucgr.K01062 Eucalyptus grandis HOM05D000179 ORTHO05D000107 1.7e-12 77.8 325 28.9
Psat0s283g0040 Pisum sativum HOM05D000179 ORTHO05D000107 1.7e-12 77.8 291 31.6
Atru.chr6.2924 Acer truncatum HOM05D000179 ORTHO05D000107 2.3e-12 77.4 336 28.9
DCAR_013042 Daucus carota HOM05D000179 ORTHO05D000107 2.3e-12 77.4 151 39.1
Lj3g0015548 Lotus japonicus HOM05D000179 ORTHO05D000107 2.3e-12 77.4 333 28.5
Dinv04584 Davidia involucrata HOM05D000179 ORTHO05D000107 5.1e-12 76.3 326 29.8
EL10Ac9g20826 Beta vulgaris HOM05D000179 ORTHO05D000107 6.6e-12 75.9 356 27.5
Ciclev10015043m.g Citrus clementina HOM05D000179 ORTHO05D000107 8.6e-12 75.5 340 30.0
Actinidia10994 Actinidia chinensis HOM05D000179 ORTHO05D000107 1.5e-11 74.7 295 29.8
BcaC06g31645 Brassica carinata HOM05D000179 ORTHO05D000107 1.5e-11 74.7 62 59.7
CSS0039438 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 1.5e-11 74.7 154 37.7
Solyc07g053570.4 Solanum lycopersicum HOM05D000179 ORTHO05D000107 1.5e-11 74.7 347 28.5
Sc12g0003260 Simmondsia chinensis HOM05D000179 ORTHO05D000107 2.5e-11 73.9 337 28.5
THA.LOC104814514 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 3.3e-11 73.6 331 29.0
arahy.Tifrunner.gnm1.ann1.IGV1QM Arachis hypogaea HOM05D000179 ORTHO05D000107 7.3e-11 72.4 342 33.3
AUR62038988 Chenopodium quinoa HOM05D000179 ORTHO05D000107 9.6e-11 72.0 302 28.8
arahy.Tifrunner.gnm1.ann1.TQHX8C Arachis hypogaea HOM05D000179 ORTHO05D000107 1.6e-10 71.2 343 32.9
AUR62036065 Chenopodium quinoa HOM05D000179 ORTHO05D000107 2.8e-10 70.5 297 29.3
TAR624G0041 Trochodendron aralioides HOM05D000179 ORTHO05D000107 2.8e-10 70.5 299 29.8
MELO3C018864.2 Cucumis melo HOM05D000179 ORTHO05D000107 3.6e-10 70.1 295 29.5
SGA_v2.0_scaffold70G23482 Striga asiatica HOM05D000179 ORTHO05D000107 3.6e-10 70.1 327 28.1
Atru.chr6.2862 Acer truncatum HOM05D001387 ORTHO05D000107 4.7e-10 69.7 277 30.3
FAN05G4351 Fragaria x ananassa HOM05D000179 ORTHO05D000107 4.7e-10 69.7 336 28.6
FAN09G2011 Fragaria x ananassa HOM05D000179 ORTHO05D000107 4.7e-10 69.7 336 27.7
Migut.M00153 Erythranthe guttata HOM05D000179 ORTHO05D000107 6.2e-10 69.3 305 29.2
PGR142G2299 Punica granatum HOM05D000179 ORTHO05D000107 6.2e-10 69.3 299 29.1
SalBow7G3562 Salvia bowleyana HOM05D000179 ORTHO05D000107 6.2e-10 69.3 297 29.0
BcaC05g24501 Brassica carinata HOM05D000179 ORTHO05D000107 8.1e-10 68.9 67 59.7
Lsat_1_v5_gn_4_66301 Lactuca sativa HOM05D000179 ORTHO05D000107 1.4e-09 68.2 312 28.8
RcHm_v2.0_Chr2g0128541 Rosa chinensis HOM05D000179 ORTHO05D000107 1.4e-09 68.2 337 28.8
FAN02G0187 Fragaria x ananassa HOM05D000179 ORTHO05D000107 1.8e-09 67.8 336 27.4
Oeu022440.1 Olea europaea HOM05D000179 ORTHO05D000107 1.8e-09 67.8 327 27.5
SalBow7G0051 Salvia bowleyana HOM05D000179 ORTHO05D000107 1.8e-09 67.8 297 29.0
vmacro12350 Vaccinium macrocarpon HOM05D000179 ORTHO05D000107 2.4e-09 67.4 297 25.9
FAN14G5733 Fragaria x ananassa HOM05D000179 ORTHO05D000107 3.1e-09 67.0 336 28.0
Hund01009 Selenicereus undatus HOM05D000179 ORTHO05D000107 5.2e-09 66.2 340 29.7
arahy.Tifrunner.gnm1.ann1.5RS65W Arachis hypogaea HOM05D000179 ORTHO05D000107 6.8e-09 65.9 288 33.0
Lj3g0001553 Lotus japonicus HOM05D000179 ORTHO05D000107 8.9e-09 65.5 304 27.3
FvH4_6g26760 Fragaria vesca HOM05D000179 ORTHO05D000107 1.2e-08 65.1 336 26.8
BcaC06g31646 Brassica carinata HOM05D000179 ORTHO05D092040 1.5e-08 64.7 87 55.2
Nn1g04251 Nelumbo nucifera HOM05D000179 ORTHO05D000107 1.5e-08 64.7 234 29.9
TWI14G1092 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 1.5e-08 64.7 291 29.6
Phvul.005G099800 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 3.4e-08 63.5 298 26.8
arahy.Tifrunner.gnm1.ann1.6Z1LR7 Arachis hypogaea HOM05D000179 ORTHO05D000107 4.4e-08 63.2 282 33.0
CsaV3_7G003130 Cucumis sativus L. HOM05D000179 ORTHO05D000107 5.8e-08 62.8 296 30.1
Aqoxy1G02296 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 7.6e-08 62.4 321 28.0
Lj1A708T20 Lonicera japonica HOM05D000179 ORTHO05D000107 7.6e-08 62.4 299 26.4
Oeu047869.1 Olea europaea HOM05D000179 ORTHO05D000107 7.6e-08 62.4 148 36.5
Glyma.12G118800 Glycine max HOM05D000179 ORTHO05D000107 9.9e-08 62.0 294 29.3
PSO675G6655 Papaver somniferum HOM05D000179 ORTHO05D000107 1.3e-07 61.6 321 30.5
arahy.Tifrunner.gnm1.ann1.H5QJF0 Arachis hypogaea HOM05D000179 ORTHO05D000107 2.2e-07 60.8 293 32.1
Nn1g06399 Nelumbo nucifera HOM05D000179 ORTHO05D000107 2.2e-07 60.8 149 36.2
PSO541G2839 Papaver somniferum HOM05D000179 ORTHO05D000107 2.2e-07 60.8 322 30.7
Lalb_Chr14g0367181 Lupinus albus HOM05D000179 ORTHO05D000107 2.9e-07 60.5 325 28.0
HanXRQChr05g0140401 Helianthus annuus HOM05D000179 ORTHO05D000107 8.4e-07 58.9 310 28.1
Medtr2g090745 Medicago truncatula HOM05D000179 ORTHO05D000107 1.1e-06 58.5 233 29.2
Oeu016005.1 Olea europaea HOM05D000179 ORTHO05D000107 1.1e-06 58.5 327 26.9
Psat5g274000 Pisum sativum HOM05D000179 ORTHO05D000107 1.1e-06 58.5 286 27.6
Cpa.g.c36910 Carica papaya HOM05D000179 ORTHO05D000107 3.2e-06 57.0 156 34.6
VMungo1080G0780 Vigna mungo HOM05D000179 ORTHO05D000107 3.2e-06 57.0 336 26.2
Nitab4.5_0005191g0020 Nicotiana tabacum HOM05D000179 ORTHO05D000107 4.2e-06 56.6 325 25.5
Glyma.12G207200 Glycine max HOM05D000179 ORTHO05D000107 5.4e-06 56.2 299 25.8
MELO3C019330.2 Cucumis melo HOM05D000179 ORTHO05D000107 7.1e-06 55.8 311 27.0
Prupe.3G128100 Prunus persica HOM05D000179 ORTHO05D000107 7.1e-06 55.8 46 60.9
TAR626G1149 Trochodendron aralioides HOM05D000179 ORTHO05D000107 7.1e-06 55.8 287 26.8
Ca_17939_v3 Cicer arietinum L. HOM05D000179 ORTHO05D000107 9.3e-06 55.5 245 27.8
Glyma.06G287200 Glycine max HOM05D000179 ORTHO05D000107 9.3e-06 55.5 305 27.2


User provided reference genes

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