Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p41650 Brassica napus HOM05D001060 ORTHO05D042607 9.8e-36 152.9 76 100.0
BolC2t10181H Brassica oleracea HOM05D001060 ORTHO05D042607 1.7e-24 115.5 56 100.0
AL1G20090 Arabidopsis lyrata HOM05D001060 ORTHO05D000905 2.5e-15 85.1 88 54.5
AT1G09570 Arabidopsis thaliana HOM05D001060 ORTHO05D000905 2.5e-15 85.1 88 54.5
Thhalv10006625m.g Eutrema salsugineum HOM05D001060 ORTHO05D000905 2.5e-15 85.1 88 54.5
CARHR009540 Cardamine hirsuta HOM05D001060 ORTHO05D000905 3.3e-15 84.7 88 53.4
A06p06260 Brassica napus HOM05D001060 ORTHO05D000905 4.3e-15 84.3 88 54.5
C05p07590 Brassica napus HOM05D001060 ORTHO05D000905 4.3e-15 84.3 88 54.5
BolC5t29513H Brassica oleracea HOM05D001060 ORTHO05D000905 4.3e-15 84.3 88 54.5
BraA06t23837Z Brassica rapa HOM05D001060 ORTHO05D000905 4.3e-15 84.3 88 54.5
Sp1g08170 Schrenkiella parvula HOM05D001060 ORTHO05D000905 4.3e-15 84.3 88 54.5
Aa31LG1G5460 Aethionema arabicum HOM05D001060 ORTHO05D000905 1.2e-14 82.8 88 53.4
Carub.0001s0891 Capsella rubella HOM05D001060 ORTHO05D000905 1.2e-14 82.8 88 53.4
THA.LOC104820387 Tarenaya hassleriana HOM05D001060 ORTHO05D000905 8.1e-14 80.1 88 50.0
A09p65420 Brassica napus HOM05D001060 ORTHO05D000905 1.4e-13 79.3 89 50.6
THA.LOC104816836 Tarenaya hassleriana HOM05D001060 ORTHO05D000905 1.4e-13 79.3 88 48.9
Cpa.g.sc48.231 Carica papaya HOM05D001060 ORTHO05D000905 1.8e-13 79.0 88 50.0
BcaC07g41872 Brassica carinata HOM05D001060 ORTHO05D000905 6.8e-13 77.0 90 50.0
C08p49390 Brassica napus HOM05D001060 ORTHO05D000905 6.8e-13 77.0 90 50.0
BolC8t52475H Brassica oleracea HOM05D001060 ORTHO05D000905 6.8e-13 77.0 90 50.0
Potri.013G000300 Populus trichocarpa HOM05D001060 ORTHO05D000905 1.5e-12 75.9 88 48.9
Nitab4.5_0000081g0020 Nicotiana tabacum HOM05D001060 ORTHO05D000905 1.3e-11 72.8 88 45.5
Nitab4.5_0016503g0010 Nicotiana tabacum HOM05D001060 ORTHO05D000905 1.7e-11 72.4 88 44.3
Dinv24530 Davidia involucrata HOM05D001060 ORTHO05D000905 2.2e-11 72.0 88 45.5
Ah.03g147780 Amaranthus hybridus HOM05D001060 ORTHO05D000905 2.9e-11 71.6 88 45.5
PGR031G2588 Punica granatum HOM05D001060 ORTHO05D000905 2.9e-11 71.6 88 45.5
Sabra13G0000400 Salix brachista HOM05D001060 ORTHO05D000905 3.8e-11 71.2 88 47.7
Cfa004404 Carpinus fangiana HOM05D001060 ORTHO05D000905 4.9e-11 70.9 88 45.5
Haze_15002 Corylus avellana HOM05D001060 ORTHO05D000905 4.9e-11 70.9 88 45.5
EL10Ac6g15315 Beta vulgaris HOM05D001060 ORTHO05D000905 6.4e-11 70.5 88 45.5
COL.COLO4_05474 Corchorus olitorius HOM05D001060 ORTHO05D000905 6.4e-11 70.5 88 45.5
TWI56G0840 Tripterygium wilfordii HOM05D001060 ORTHO05D000905 6.4e-11 70.5 88 46.6
Lj5C313T8 Lonicera japonica HOM05D001060 ORTHO05D000905 1.4e-10 69.3 88 43.2
CANSAT54G1448 Cannabis sativa HOM05D001060 ORTHO05D000905 1.9e-10 68.9 88 43.2
Eucgr.B01356 Eucalyptus grandis HOM05D001060 ORTHO05D000905 1.9e-10 68.9 88 43.2
Duzib177G0101 Durio zibethinus HOM05D001060 ORTHO05D000905 3.2e-10 68.2 88 43.2
FAN09G4358 Fragaria x ananassa HOM05D001060 ORTHO05D000905 3.2e-10 68.2 88 44.3
Manes.09G182500 Manihot esculenta HOM05D001060 ORTHO05D000905 3.2e-10 68.2 88 44.3
Peaxi162Scf00035g00513 Petunia axillaris HOM05D001060 ORTHO05D000905 3.2e-10 68.2 88 42.0
Sopen10g013350 Solanum pennellii HOM05D001060 ORTHO05D000905 3.2e-10 68.2 88 43.2
CiPaw.08G121400 Carya illinoinensis HOM05D001060 ORTHO05D000905 4.1e-10 67.8 88 42.0
Cc02_g36930 Coffea canephora HOM05D001060 ORTHO05D000905 4.1e-10 67.8 88 42.0
Hma1.2p1_0157F.1_g069520 Hydrangea macrophylla HOM05D001060 ORTHO05D000905 4.1e-10 67.8 88 42.0
QL03p011389 Quercus lobata HOM05D001060 ORTHO05D000905 4.1e-10 67.8 88 43.2
Thecc.05G331300 Theobroma cacao HOM05D001060 ORTHO05D000905 4.1e-10 67.8 88 44.3
CSS0032712 Camellia sinensis var. sinensis HOM05D001060 ORTHO05D000905 5.4e-10 67.4 88 39.8
VMungo0720G2455 Vigna mungo HOM05D001060 ORTHO05D000905 5.4e-10 67.4 88 45.5
Actinidia22844 Actinidia chinensis HOM05D001060 ORTHO05D000905 7.1e-10 67.0 88 42.0
arahy.Tifrunner.gnm1.ann1.HS5Z9Z Arachis hypogaea HOM05D001060 ORTHO05D000905 7.1e-10 67.0 88 44.3
arahy.Tifrunner.gnm1.ann1.NNA8KD Arachis hypogaea HOM05D001060 ORTHO05D000905 7.1e-10 67.0 88 44.3
Ciclev10027712m.g Citrus clementina HOM05D001060 ORTHO05D000905 7.1e-10 67.0 88 43.2
Gohir.A11G261900 Gossypium hirsutum HOM05D001060 ORTHO05D000905 7.1e-10 67.0 88 43.2
Gohir.D11G271900 Gossypium hirsutum HOM05D001060 ORTHO05D000905 7.1e-10 67.0 88 43.2
Gorai.007G292800 Gossypium raimondii HOM05D001060 ORTHO05D000905 7.1e-10 67.0 88 43.2
Sc07g0001860 Simmondsia chinensis HOM05D001060 ORTHO05D000905 7.1e-10 67.0 88 40.9
Solyc10g044670.3 Solanum lycopersicum HOM05D001060 ORTHO05D000905 7.1e-10 67.0 88 42.0
PGSC0003DMG400015766 Solanum tuberosum HOM05D001060 ORTHO05D000905 7.1e-10 67.0 88 42.0
CAN.G429.2 Capsicum annuum HOM05D001060 ORTHO05D000905 9.2e-10 66.6 88 42.0
FAN02G4497 Fragaria x ananassa HOM05D001060 ORTHO05D000905 9.2e-10 66.6 88 43.2
AUR62003557 Chenopodium quinoa HOM05D001060 ORTHO05D000905 1.2e-09 66.2 88 42.0
AUR62017871 Chenopodium quinoa HOM05D001060 ORTHO05D000905 1.2e-09 66.2 88 42.0
FAN05G1821 Fragaria x ananassa HOM05D001060 ORTHO05D000905 1.2e-09 66.2 88 43.2
MD04G1183900 Malus domestica HOM05D001060 ORTHO05D000905 1.2e-09 66.2 88 43.2
TAR365G0375 Trochodendron aralioides HOM05D001060 ORTHO05D000905 1.2e-09 66.2 88 43.2
Atru.chr12.1504 Acer truncatum HOM05D001060 ORTHO05D000905 1.6e-09 65.9 88 43.2
Atru.chr12.1508 Acer truncatum HOM05D001060 ORTHO05D000905 1.6e-09 65.9 88 43.2
ECA236G1396 Erigeron canadensis HOM05D001060 ORTHO05D000905 1.6e-09 65.9 88 39.8
FvH4_6g08760 Fragaria vesca HOM05D001060 ORTHO05D000905 1.6e-09 65.9 88 43.2
FAN14G2105 Fragaria x ananassa HOM05D001060 ORTHO05D000905 1.6e-09 65.9 88 43.2
Lj5g0019635 Lotus japonicus HOM05D001060 ORTHO05D000905 1.6e-09 65.9 88 44.3
CSS0024372 Camellia sinensis var. sinensis HOM05D001060 ORTHO05D000905 2.1e-09 65.5 88 39.8
Glyma.20G090000 Glycine max HOM05D001060 ORTHO05D000905 2.1e-09 65.5 88 44.3
Phvul.001G221100 Phaseolus vulgaris HOM05D001060 ORTHO05D000905 2.7e-09 65.1 88 44.3
Phvul.007G206800 Phaseolus vulgaris HOM05D001060 ORTHO05D000905 2.7e-09 65.1 88 44.3
VMungo1383G3706 Vigna mungo HOM05D001060 ORTHO05D000905 2.7e-09 65.1 88 44.3
GSVIVG01031354001 Vitis vinifera HOM05D001060 ORTHO05D000905 2.7e-09 65.1 88 43.2
Ca_10217_v3 Cicer arietinum L. HOM05D001060 ORTHO05D000905 3.5e-09 64.7 88 43.2
Glyma.10G141400 Glycine max HOM05D001060 ORTHO05D000905 3.5e-09 64.7 88 44.3
RcHm_v2.0_Chr3g0459021 Rosa chinensis HOM05D001060 ORTHO05D000905 3.5e-09 64.7 88 43.2
Sed0008560 Sechium edule HOM05D001060 ORTHO05D000905 3.5e-09 64.7 88 40.9
arahy.Tifrunner.gnm1.ann1.7E2TSQ Arachis hypogaea HOM05D001060 ORTHO05D000905 4.6e-09 64.3 88 44.3
arahy.Tifrunner.gnm1.ann1.D04KR2 Arachis hypogaea HOM05D001060 ORTHO05D000905 4.6e-09 64.3 88 44.3
CsaV3_6G036100 Cucumis sativus L. HOM05D001060 ORTHO05D000905 4.6e-09 64.3 88 42.0
Rhsim11G0107300 Rhododendron simsii HOM05D001060 ORTHO05D000905 4.6e-09 64.3 88 38.6
MBI18_g03867_MAGBIO Magnolia biondii HOM05D001060 ORTHO05D000905 6.0e-09 63.9 88 42.0
Psat6g156640 Pisum sativum HOM05D001060 ORTHO05D000905 6.0e-09 63.9 88 43.2
Prupe.6G302500 Prunus persica HOM05D001060 ORTHO05D000905 6.0e-09 63.9 88 42.0
TPR.G34894 Trifolium pratense HOM05D001060 ORTHO05D000905 6.0e-09 63.9 88 43.2
MELO3C026502.2 Cucumis melo HOM05D001060 ORTHO05D000905 7.8e-09 63.5 88 39.8
Lsat_1_v5_gn_9_83701 Lactuca sativa HOM05D001060 ORTHO05D000905 7.8e-09 63.5 88 38.6
Oeu000176.1 Olea europaea HOM05D001060 ORTHO05D000905 7.8e-09 63.5 88 39.8
Gohir.D13G178700 Gossypium hirsutum HOM05D001060 ORTHO05D000905 1.0e-08 63.2 82 43.9
Hund12765 Selenicereus undatus HOM05D001060 ORTHO05D000905 1.3e-08 62.8 88 40.9
MD12G1197200 Malus domestica HOM05D001060 ORTHO05D000905 1.7e-08 62.4 88 42.0
ClCG08G009050 Citrullus lanatus HOM05D001060 ORTHO05D000905 2.3e-08 62.0 88 40.9
Glyma.19G224200 Glycine max HOM05D001060 ORTHO05D000905 2.3e-08 62.0 88 40.9
DCAR_001880 Daucus carota HOM05D001060 ORTHO05D000905 3.0e-08 61.6 88 39.8
Lalb_Chr02g0147371 Lupinus albus HOM05D001060 ORTHO05D000905 3.0e-08 61.6 88 39.8
Oeu006908.1 Olea europaea HOM05D001060 ORTHO05D000905 3.0e-08 61.6 88 39.8
HanXRQChr16g0518831 Helianthus annuus HOM05D001060 ORTHO05D000905 3.9e-08 61.2 88 37.5
DCAR_029306 Daucus carota HOM05D001060 ORTHO05D000905 5.1e-08 60.8 88 37.5
Gorai.013G203900 Gossypium raimondii HOM05D001060 ORTHO05D000905 5.1e-08 60.8 82 42.7
Medtr1g085160 Medicago truncatula HOM05D001060 ORTHO05D000905 5.1e-08 60.8 88 40.9
PSO170G5320 Papaver somniferum HOM05D001060 ORTHO05D000905 5.1e-08 60.8 88 38.6
PSO357G0575 Papaver somniferum HOM05D001060 ORTHO05D000905 5.1e-08 60.8 88 38.6
HanXRQChr06g0183081 Helianthus annuus HOM05D001060 ORTHO05D000905 8.7e-08 60.1 88 35.2
HanXRQChr16g0518821 Helianthus annuus HOM05D001060 ORTHO05D000905 8.7e-08 60.1 88 36.4
Gohir.A13G172900 Gossypium hirsutum HOM05D001060 ORTHO05D000905 1.1e-07 59.7 82 42.7
Ah.02g121400 Amaranthus hybridus HOM05D001060 ORTHO05D000905 1.5e-07 59.3 88 37.5
CDE09G0282 Ceratophyllum demersum HOM05D001060 ORTHO05D000905 1.5e-07 59.3 88 38.6
Ca_09265_v3 Cicer arietinum L. HOM05D001060 ORTHO05D000905 1.5e-07 59.3 86 40.7
Lalb_Chr06g0167211 Lupinus albus HOM05D001060 ORTHO05D000905 1.5e-07 59.3 88 38.6
vmacro01649 Vaccinium macrocarpon HOM05D001060 ORTHO05D000905 1.5e-07 59.3 88 36.4
SalBow4G0394 Salvia bowleyana HOM05D001060 ORTHO05D000905 1.9e-07 58.9 88 37.5
SalBow4G0827 Salvia bowleyana HOM05D001060 ORTHO05D000905 1.9e-07 58.9 88 37.5
vmacro16294 Vaccinium macrocarpon HOM05D001060 ORTHO05D000905 2.5e-07 58.5 46 52.2
ATR0796G080 Amborella trichopoda HOM05D001060 ORTHO05D000905 3.3e-07 58.2 88 39.8
MSTRG.5174 Avicennia marina HOM05D001060 ORTHO05D000905 3.3e-07 58.2 88 36.4
Migut.N00986 Erythranthe guttata HOM05D001060 ORTHO05D000905 3.3e-07 58.2 63 44.4
Migut.B00907 Erythranthe guttata HOM05D001060 ORTHO05D000905 4.3e-07 57.8 89 37.1
Lalb_Chr21g0309961 Lupinus albus HOM05D001060 ORTHO05D000905 5.6e-07 57.4 88 37.5
MSTRG.27904 Avicennia marina HOM05D001060 ORTHO05D000905 7.3e-07 57.0 88 36.4
Aqoxy5G02872 Aquilegia oxysepala HOM05D001060 ORTHO05D000905 9.6e-07 56.6 46 54.3
SEGI_24582 Sequoiadendron giganteum HOM05D001060 ORTHO05D000905 1.2e-06 56.2 88 36.4
Sed0017886 Sechium edule HOM05D001060 ORTHO05D000905 1.6e-06 55.8 85 38.8
PSO223G0068 Papaver somniferum HOM05D001060 ORTHO05D000905 2.1e-06 55.5 88 36.4
Os03g0719800 Oryza sativa ssp. japonica HOM05D001060 ORTHO05D000905 3.6e-06 54.7 88 34.1
Zm00001eb055460 Zea mays HOM05D001060 ORTHO05D000905 4.7e-06 54.3 88 35.2
Eucgr.K03574 Eucalyptus grandis HOM05D001060 ORTHO05D000905 8.1e-06 53.5 85 32.9


User provided reference genes

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