Gene: Cfa004404
General Information
Structural Information
- Species Carpinus fangiana
- Gene Identifier Cfa004404
- Transcript Identifier Cfa004404.t1
- Gene Type Coding gene
- Location Cfa01 : 60125672-60130871 : positive
Gene Family Information
- ID HOM05D001060
- #Genes/#Species 575/98
- Phylogenetic origin
- ID ORTHO05D000905
- #Genes/#Species 561/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Cfa004404.t1
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010161 | ISO | PLAZA Integrative Orthology | red light signaling pathway | AT1G09570 |
| GO:0010201 | ISO | PLAZA Integrative Orthology | response to continuous far red light stimulus by the high-irradiance response system | AT1G09570 |
| GO:0017148 | ISO | PLAZA Integrative Orthology | negative regulation of translation | AT1G09570 |
| GO:0010203 | ISO | PLAZA Integrative Orthology | response to very low fluence red light stimulus | AT1G09570 |
| GO:0046685 | ISO | PLAZA Integrative Orthology | response to arsenic-containing substance | AT1G09570 |
| GO:0010218 | ISO | PLAZA Integrative Orthology | response to far red light | AT1G09570 |
| GO:0009638 | ISO | PLAZA Integrative Orthology | phototropism | AT1G09570 |
| GO:0009630 | ISO | PLAZA Integrative Orthology | gravitropism | AT1G09570 |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0009640 | ISO | PLAZA Integrative Orthology | photomorphogenesis | AT1G09570 |
| GO:0018298 | IEA | InterPro | protein-chromophore linkage | |
| GO:0017006 | IEA | InterPro | protein-tetrapyrrole linkage | |
| GO:0009585 | IEA | InterPro | red, far-red light phototransduction | |
| GO:0007165 | IEA | InterPro | signal transduction | |
| GO:0009584 | IEA | InterPro | detection of visible light |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT1G09570 |
| GO:0031516 | ISO | PLAZA Integrative Orthology | far-red light photoreceptor activity | AT1G09570 |
| GO:0009883 | ISO | PLAZA Integrative Orthology | red or far-red light photoreceptor activity | AT1G09570 |
| GO:0004672 | ISO | PLAZA Integrative Orthology | protein kinase activity | AT1G09570 |
| GO:0042802 | ISO | PLAZA Integrative Orthology | identical protein binding | AT1G09570 |
| GO:0042803 | IEA | InterPro | protein homodimerization activity | |
| GO:0009881 | IEA | InterPro | photoreceptor activity | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0000155 | IEA | InterPro | phosphorelay sensor kinase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT1G09570 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G09570 |
| GO:0016604 | ISO | PLAZA Integrative Orthology | nuclear body | AT1G09570 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001294 | Phytochrome |
| IPR035965 | PAS domain superfamily |
| IPR000014 | PAS domain |
| IPR044767 | Phytochrome A/B/C/D/E-like, histidine-kinase-related domain |
| IPR013767 | PAS fold |
| IPR003661 | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain |
| IPR013654 | PAS fold-2 |
| IPR036890 | Histidine kinase/HSP90-like ATPase superfamily |
| IPR003594 | Histidine kinase/HSP90-like ATPase |
| IPR003018 | GAF domain |
| IPR012129 | Phytochrome A/B/C/D/E |
| IPR043150 | Phytochrome, PHY domain |
| IPR013515 | Phytochrome, central region |
| IPR029016 | GAF-like domain superfamily |
| Mapman id | Description |
|---|---|
| 26.1.1.1 | External stimuli response.light.red/far red light.phytochrome photoreceptor (PHY) |