Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 0.0e+00 1564.7 870 100.0
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 0.0e+00 1554.7 882 96.7
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 0.0e+00 1506.1 870 94.7
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 0.0e+00 1460.3 871 92.4
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 0.0e+00 1401.3 898 87.8
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 0.0e+00 1363.2 873 87.1
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 0.0e+00 1280.0 875 81.5
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 0.0e+00 1188.7 866 77.7
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 0.0e+00 1178.7 872 76.4
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 0.0e+00 1168.7 872 75.0
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 0.0e+00 1166.0 868 73.4
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 0.0e+00 1149.4 870 75.1
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 0.0e+00 1132.5 883 72.1
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 8.0e-299 1030.4 872 68.9
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 5.0e-293 1011.1 879 67.8
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 7.5e-289 997.3 841 69.0
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 4.8e-288 994.6 867 65.1
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 1.0e-285 986.9 867 66.0
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.5e-284 983.0 878 66.7
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 2.2e-264 916.0 865 62.5
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 1.5e-236 823.5 753 65.5
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 3.0e-221 772.7 903 50.6
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 4.0e-218 762.3 884 52.7
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 4.5e-217 758.8 924 51.7
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 3.9e-213 745.7 893 50.2
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 2.5e-212 743.0 900 49.7
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 9.7e-212 741.1 889 51.5
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.8e-210 736.9 899 52.7
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 4.1e-210 735.7 910 49.7
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 5.3e-210 735.3 924 49.6
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 6.9e-210 734.9 899 52.9
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 7.6e-209 731.5 892 49.6
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 1.3e-208 730.7 897 48.8
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 2.2e-208 729.9 872 51.3
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 2.9e-208 729.6 913 50.8
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 5.0e-208 728.8 895 51.4
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 6.5e-208 728.4 883 51.2
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 8.5e-208 728.0 898 48.6
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 2.1e-206 723.4 901 49.7
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 1.3e-205 720.7 894 49.6
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 3.9e-205 719.2 892 48.8
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 1.1e-204 717.6 912 50.0
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 4.3e-204 715.7 913 48.5
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 7.4e-204 714.9 888 49.4
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 3.7e-203 712.6 895 48.3
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 9.1e-202 708.0 888 49.1
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 4.5e-201 705.7 894 49.0
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 4.5e-201 705.7 895 47.2
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 5.9e-201 705.3 879 48.8
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 1.7e-200 703.7 845 50.8
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 6.5e-200 701.8 884 47.6
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 3.2e-199 699.5 911 47.7
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 9.4e-199 698.0 878 48.7
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 9.4e-199 698.0 859 50.1
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 1.0e-197 694.5 897 48.0
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 1.4e-197 694.1 890 47.8
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 3.0e-197 693.0 828 51.4
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 5.7e-196 688.7 901 47.7
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 1.7e-195 687.2 872 49.2
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 2.8e-195 686.4 884 47.4
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 4.8e-195 685.6 885 46.1
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 2.4e-194 683.3 897 47.0
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 5.3e-194 682.2 904 47.0
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 1.5e-193 680.6 892 49.3
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 5.9e-193 678.7 899 48.1
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 7.7e-193 678.3 903 47.6
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 6.5e-192 675.2 888 48.2
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 1.9e-191 673.7 903 49.5
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 3.2e-191 672.9 924 51.0
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 1.6e-190 670.6 903 48.1
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.4e-189 667.5 902 46.5
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.8e-189 667.2 897 46.3
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 8.8e-189 664.8 834 49.0
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 1.5e-188 664.1 886 46.6
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.5e-188 664.1 888 47.4
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 2.0e-188 663.7 916 46.0
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 2.6e-188 663.3 904 46.2
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 3.3e-188 662.9 890 49.0
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 5.7e-188 662.1 901 46.5
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 7.4e-188 661.8 907 48.6
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.8e-186 657.1 892 47.3
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 3.1e-186 656.4 824 50.4
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 3.5e-185 652.9 892 49.7
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 3.5e-185 652.9 892 49.7
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 2.5e-183 646.7 873 45.7
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 7.2e-183 645.2 898 46.2
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 6.1e-182 642.1 849 47.8
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 8.0e-182 641.7 885 45.8
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 8.0e-182 641.7 900 47.9
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 3.0e-181 639.8 894 46.3
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 4.0e-181 639.4 903 45.8
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 1.5e-180 637.5 886 47.1
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 4.4e-180 636.0 896 47.8
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 7.5e-180 635.2 868 47.8
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 5.9e-177 625.5 927 44.6
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 8.0e-174 615.1 881 46.0
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 3.0e-173 613.2 746 48.7
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 8.8e-173 611.7 875 45.8
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 1.5e-172 610.9 897 46.0
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 2.6e-172 610.1 877 46.5
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 2.6e-172 610.1 846 45.6
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 9.8e-172 608.2 893 44.6
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 5.4e-170 602.4 848 44.8
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 1.0e-168 598.2 886 45.6
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 3.6e-166 589.7 891 42.2
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 8.0e-166 588.6 885 45.3
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 1.5e-164 584.3 890 42.7
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 3.4e-164 583.2 870 45.5
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 4.1e-162 576.2 896 41.7
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.9e-159 567.4 784 46.6
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 2.1e-158 563.9 880 41.8
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 2.1e-158 563.9 873 44.3
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 2.0e-156 557.4 399 80.5
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 2.4e-154 550.4 380 81.8
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 2.7e-153 547.0 380 81.6
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 2.7e-153 547.0 790 46.6
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 1.5e-151 541.2 762 45.3
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 5.6e-151 539.3 389 79.4
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 1.2e-148 531.6 343 86.0
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 6.4e-147 525.8 865 41.2
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 5.2e-141 506.1 621 46.9
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 8.6e-136 488.8 380 75.3
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 1.4e-130 471.5 271 93.4
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 2.4e-130 470.7 652 47.7
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 7.1e-130 469.2 574 50.7
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 1.6e-129 468.0 655 48.4
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 3.6e-126 456.8 1073 37.1
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 4.7e-126 456.4 344 75.6
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 1.6e-121 441.4 861 39.5
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 1.3e-118 431.8 289 84.4
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 2.6e-108 397.5 831 35.6
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 3.0e-104 384.0 903 35.3
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 3.9e-104 383.6 287 77.7
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 4.3e-103 380.2 288 77.4
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 1.5e-100 371.7 445 49.4
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 1.1e-98 365.5 1060 34.2
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 1.6e-97 361.7 420 51.2
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 7.4e-95 352.8 280 73.6
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 1.6e-94 351.7 280 73.6
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 1.8e-88 331.6 442 46.8
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 1.8e-85 321.6 994 32.7
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 3.7e-78 297.4 469 41.8
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 1.2e-76 292.4 921 31.3
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 4.7e-73 280.4 168 90.5
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 9.7e-71 272.7 160 91.9
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 1.2e-68 265.8 345 44.3
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.0e-67 262.7 261 54.4
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 1.5e-66 258.8 986 27.3
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.5e-66 258.8 282 51.1
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 2.3e-64 251.5 352 44.3
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 1.2e-63 249.2 207 62.3
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 1.5e-63 248.8 719 30.6
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 7.0e-61 240.0 205 59.5
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 2.3e-56 224.9 837 28.8
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 1.1e-50 206.1 315 42.5
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 3.9e-43 181.0 458 32.5
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.0e-40 172.9 174 58.6
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.0e-40 172.9 176 57.4
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 8.9e-40 169.9 185 49.7
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.2e-38 165.2 162 52.5
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.7e-35 155.6 686 26.5
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 4.7e-33 147.5 112 64.3
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 9.2e-29 133.3 313 34.8
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 2.7e-28 131.7 190 40.5
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 5.1e-27 127.5 155 41.9
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 6.2e-25 120.6 129 48.1
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.8e-24 119.0 127 53.5
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 4.0e-24 117.9 194 43.8
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 5.8e-23 114.0 122 54.9
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 2.2e-22 112.1 979 25.1
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 6.6e-19 100.5 58 87.9
C04p15890 Brassica napus HOM05D000022 ORTHO05D010270 1.6e-12 79.3 52 86.5
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 5.1e-11 74.3 82 52.4
A04p15050 Brassica napus HOM05D000880 ORTHO05D014501 1.3e-09 69.7 38 89.5
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 8.1e-09 67.0 175 25.1
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 2.4e-08 65.5 265 28.7
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 2.2e-06 58.9 50 56.0


User provided reference genes

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