Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 9.8e-133 476.9 252 100.0
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 3.1e-126 455.3 253 96.0
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 1.2e-125 453.4 253 95.7
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 2.2e-124 449.1 258 94.2
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 2.2e-124 449.1 258 94.2
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 5.9e-53 211.8 279 47.3
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 2.0e-45 186.8 280 44.6
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 1.6e-37 160.6 156 58.3
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 1.0e-36 157.9 165 55.2
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 8.6e-36 154.8 154 57.8
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 1.1e-30 137.9 151 51.7
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 1.1e-22 111.3 68 69.1
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 1.9e-22 110.5 78 59.0
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 2.4e-22 110.2 78 60.3
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 7.0e-22 108.6 79 59.5
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 7.0e-22 108.6 68 64.7
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 1.2e-21 107.8 68 63.2
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 1.2e-21 107.8 67 65.7
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.0e-21 107.1 68 66.2
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.0e-21 107.1 68 66.2
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 2.0e-21 107.1 74 60.8
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 2.0e-21 107.1 74 60.8
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 2.7e-21 106.7 68 61.8
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 2.7e-21 106.7 94 53.2
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 2.7e-21 106.7 68 63.2
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 4.6e-21 105.9 69 65.2
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 4.6e-21 105.9 69 62.3
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 4.6e-21 105.9 71 63.4
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 4.6e-21 105.9 69 63.8
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 6.0e-21 105.5 69 62.3
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 6.0e-21 105.5 68 63.2
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 6.0e-21 105.5 103 48.5
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 6.0e-21 105.5 71 62.0
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 1.0e-20 104.8 69 63.8
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.0e-20 104.8 69 63.8
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.0e-20 104.8 73 60.3
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.0e-20 104.8 73 60.3
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.0e-20 104.8 71 60.6
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 1.0e-20 104.8 94 52.1
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.3e-20 104.4 72 61.1
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 1.3e-20 104.4 72 61.1
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 1.7e-20 104.0 69 65.2
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 1.7e-20 104.0 85 55.3
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 2.3e-20 103.6 69 60.9
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 2.3e-20 103.6 63 66.7
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 2.3e-20 103.6 98 51.0
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.3e-20 103.6 63 66.7
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.3e-20 103.6 63 66.7
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 2.3e-20 103.6 67 64.2
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 3.0e-20 103.2 73 60.3
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 3.0e-20 103.2 69 60.9
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 3.0e-20 103.2 98 48.0
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.0e-20 103.2 64 65.6
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 3.9e-20 102.8 67 62.7
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 3.9e-20 102.8 63 66.7
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 3.9e-20 102.8 74 58.1
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 3.9e-20 102.8 64 64.1
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 5.0e-20 102.4 65 67.7
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 5.0e-20 102.4 97 48.5
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 6.6e-20 102.1 71 60.6
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 6.6e-20 102.1 71 60.6
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 6.6e-20 102.1 71 60.6
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 6.6e-20 102.1 68 63.2
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 8.6e-20 101.7 66 63.6
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 8.6e-20 101.7 62 67.7
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 8.6e-20 101.7 62 67.7
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 8.6e-20 101.7 66 65.2
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.1e-19 101.3 63 66.7
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 1.1e-19 101.3 62 66.1
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 1.1e-19 101.3 63 66.7
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 1.5e-19 100.9 69 60.9
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 1.5e-19 100.9 62 66.1
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.5e-19 100.9 62 66.1
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.5e-19 100.9 62 66.1
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 1.5e-19 100.9 62 66.1
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.5e-19 100.9 98 48.0
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.5e-19 100.9 68 60.3
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.9e-19 100.5 68 61.8
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 1.9e-19 100.5 62 66.1
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.9e-19 100.5 62 66.1
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 2.5e-19 100.1 63 65.1
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 2.5e-19 100.1 75 53.3
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 2.5e-19 100.1 62 64.5
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 2.5e-19 100.1 61 68.9
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 2.5e-19 100.1 63 65.1
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 3.3e-19 99.8 67 62.7
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 3.3e-19 99.8 72 56.9
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 3.3e-19 99.8 64 62.5
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 3.3e-19 99.8 68 58.8
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 4.3e-19 99.4 98 48.0
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 4.3e-19 99.4 61 65.6
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 4.3e-19 99.4 75 58.7
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 4.3e-19 99.4 63 66.7
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 4.3e-19 99.4 63 66.7
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 4.3e-19 99.4 62 64.5
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 4.3e-19 99.4 69 59.4
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 4.3e-19 99.4 61 67.2
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 5.6e-19 99.0 69 63.8
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 5.6e-19 99.0 94 47.9
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 5.6e-19 99.0 91 49.5
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 7.3e-19 98.6 64 62.5
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 7.3e-19 98.6 69 60.9
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 9.5e-19 98.2 61 65.6
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 9.5e-19 98.2 61 65.6
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 9.5e-19 98.2 63 61.9
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 9.5e-19 98.2 75 56.0
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 9.5e-19 98.2 74 54.1
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 9.5e-19 98.2 62 66.1
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 1.2e-18 97.8 67 59.7
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 1.2e-18 97.8 63 61.9
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 1.6e-18 97.4 63 61.9
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 1.6e-18 97.4 73 54.8
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 2.1e-18 97.1 62 64.5
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 2.8e-18 96.7 92 51.1
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 3.6e-18 96.3 75 57.3
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 3.6e-18 96.3 103 47.6
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 4.7e-18 95.9 75 56.0
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 6.2e-18 95.5 68 58.8
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 8.0e-18 95.1 62 62.9
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 1.4e-17 94.4 96 47.9
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.2e-16 91.3 134 39.6
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 3.4e-16 89.7 73 54.8
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.9e-15 86.7 61 59.0
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 8.3e-15 85.1 68 52.9
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 8.3e-15 85.1 94 43.6
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.2e-13 81.3 77 48.1
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 1.6e-13 80.9 84 45.2
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 2.7e-13 80.1 79 45.6
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.0e-12 78.2 68 50.0
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 1.7e-12 77.4 74 43.2
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 1.7e-12 77.4 103 40.8
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 3.9e-12 76.3 51 62.7
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 3.9e-12 76.3 79 46.8
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 5.1e-12 75.9 47 61.7
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 8.6e-12 75.1 90 45.6
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 2.5e-11 73.6 44 65.9
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 3.3e-11 73.2 53 58.5
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 8.1e-10 68.6 44 59.1
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 8.9e-09 65.1 80 37.5
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 1.3e-07 61.2 38 63.2
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 6.4e-07 58.9 37 64.9
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 1.9e-06 57.4 38 57.9
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 1.9e-06 57.4 39 56.4
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 1.9e-06 57.4 39 56.4
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 5.4e-06 55.8 38 55.3


User provided reference genes

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