Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 1.7e-111 406.0 199 100.0
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 4.9e-111 404.4 199 99.5
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 1.6e-109 399.4 199 98.5
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 1.6e-109 399.4 199 98.5
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 2.6e-104 382.1 193 97.9
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 1.9e-102 375.9 202 91.1
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 6.0e-101 370.9 202 90.1
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 5.1e-100 367.9 202 88.1
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 8.7e-100 367.1 202 87.6
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 1.6e-98 362.8 202 87.6
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 4.8e-98 361.3 202 86.6
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 4.8e-98 361.3 200 87.5
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 6.2e-98 360.9 200 87.5
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 6.2e-98 360.9 200 87.5
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 9.9e-96 353.6 202 84.2
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 1.3e-95 353.2 219 80.8
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 3.2e-94 348.6 193 87.6
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 7.9e-93 344.0 194 87.6
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 6.6e-92 340.9 193 87.0
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 2.1e-90 335.9 194 86.1
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 6.2e-90 334.3 202 80.7
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 4.2e-78 295.0 201 68.2
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 4.2e-78 295.0 201 68.2
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 7.1e-78 294.3 202 67.8
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 6.0e-77 291.2 202 70.3
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 1.0e-76 290.4 201 68.2
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 8.7e-76 287.3 202 67.8
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.1e-74 282.7 198 67.2
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 2.1e-74 282.7 198 67.2
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 2.1e-74 282.7 198 69.2
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 2.8e-74 282.3 200 69.0
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 6.3e-74 281.2 199 66.8
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 8.2e-74 280.8 200 67.5
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 8.2e-74 280.8 201 67.7
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 8.2e-74 280.8 200 68.0
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 1.1e-73 280.4 200 68.0
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.4e-73 279.3 198 66.2
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 4.1e-73 278.5 197 68.0
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 4.1e-73 278.5 200 67.5
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 4.1e-73 278.5 200 66.0
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 5.3e-73 278.1 192 67.2
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 6.9e-73 277.7 199 65.8
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 5.9e-72 274.6 201 66.2
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 5.9e-72 274.6 200 65.5
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 7.6e-72 274.2 199 66.8
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 1.0e-71 273.9 201 65.2
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 1.3e-71 273.5 200 66.0
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 2.2e-71 272.7 201 65.7
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 8.5e-71 270.8 200 66.5
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 1.9e-70 269.6 200 64.5
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 1.9e-70 269.6 199 64.8
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 4.2e-70 268.5 200 64.5
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 7.2e-70 267.7 200 63.5
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 1.0e-68 263.8 154 86.4
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 1.3e-68 263.5 186 68.8
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 3.9e-68 261.9 267 51.7
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 5.1e-68 261.5 198 64.6
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 5.1e-68 261.5 197 63.5
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 6.7e-68 261.2 197 61.4
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.5e-67 260.0 197 61.9
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 1.5e-67 260.0 197 62.9
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.9e-67 259.6 190 64.7
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 2.5e-67 259.2 197 60.4
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 9.7e-67 257.3 196 61.7
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 3.7e-66 255.4 196 59.7
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 4.8e-66 255.0 199 60.3
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 6.3e-66 254.6 200 62.5
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 3.1e-65 252.3 199 59.3
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 4.1e-65 251.9 191 61.8
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 2.0e-64 249.6 199 60.3
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 7.7e-64 247.7 198 58.6
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 1.3e-63 246.9 199 58.3
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 1.3e-63 246.9 199 59.3
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.7e-63 246.5 191 60.2
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.9e-63 245.7 191 60.2
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 3.8e-63 245.4 200 60.0
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 1.4e-62 243.4 199 59.3
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.4e-62 243.4 199 58.3
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.4e-62 243.4 199 58.3
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 2.5e-62 242.7 199 58.8
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 1.2e-61 240.4 196 58.7
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.6e-61 240.0 199 57.8
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 2.1e-61 239.6 197 60.4
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 2.1e-61 239.6 195 57.9
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 3.9e-60 235.3 200 57.5
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 5.1e-60 235.0 195 53.8
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 6.7e-60 234.6 200 58.5
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 1.5e-59 233.4 200 56.5
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 3.3e-59 232.3 226 52.2
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 4.4e-59 231.9 189 59.8
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 9.7e-59 230.7 232 51.7
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 2.2e-58 229.6 226 52.2
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 1.1e-57 227.3 189 58.7
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 1.5e-56 223.4 195 51.8
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 2.6e-56 222.6 226 50.4
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 3.4e-56 222.2 225 51.6
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 3.4e-56 222.2 229 50.7
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 5.9e-56 221.5 195 52.3
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 1.7e-55 219.9 146 71.9
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 5.0e-55 218.4 169 59.2
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 1.1e-54 217.2 199 56.3
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 1.1e-54 217.2 247 48.2
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 5.5e-54 214.9 232 49.6
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 1.6e-53 213.4 232 49.1
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 1.0e-52 210.7 229 47.6
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 1.4e-52 210.3 189 54.5
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 1.4e-52 210.3 143 69.9
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 1.8e-52 209.9 229 47.6
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 3.0e-52 209.1 223 48.9
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 3.9e-52 208.8 172 55.2
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 3.9e-52 208.8 204 52.9
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 3.3e-51 205.7 148 64.2
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 7.4e-51 204.5 230 47.4
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 2.2e-50 203.0 180 55.6
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 3.7e-50 202.2 111 87.4
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.2e-48 197.2 206 51.0
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 2.0e-48 196.4 196 44.9
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 2.7e-45 186.0 190 43.7
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 6.1e-45 184.9 134 64.2
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 1.0e-44 184.1 190 50.5
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 5.2e-44 181.8 144 58.3
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 3.3e-43 179.1 193 52.3
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 1.3e-42 177.2 149 57.7
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 2.2e-42 176.4 200 43.5
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 2.2e-42 176.4 200 43.5
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 5.3e-41 171.8 196 44.9
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 1.3e-39 167.2 175 52.6
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.7e-39 166.8 115 67.0
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 1.7e-39 166.8 195 44.6
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 3.8e-39 165.6 197 45.7
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 8.5e-39 164.5 182 47.3
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 3.2e-38 162.5 110 68.2
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.6e-37 160.2 197 44.7
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 2.3e-36 156.4 150 50.0
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 2.6e-35 152.9 196 37.2
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 4.4e-35 152.1 205 36.6
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 9.8e-35 151.0 117 59.0
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 2.2e-34 149.8 190 43.7
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.0e-31 141.0 119 52.9
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 1.1e-30 137.5 196 35.7
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 9.5e-30 134.4 151 47.0
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 1.0e-28 131.0 82 79.3
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 2.3e-28 129.8 112 58.0
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.3e-28 129.8 199 36.7
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.5e-27 127.1 86 67.4
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 7.5e-27 124.8 113 53.1
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.1e-25 120.9 119 47.9
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 2.5e-22 109.8 197 38.6
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 8.0e-21 104.8 125 47.2
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 2.6e-19 99.8 203 30.5
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 1.6e-13 80.5 205 28.3
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.6e-13 80.5 58 67.2
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.1e-13 80.1 60 63.3
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 2.8e-13 79.7 67 52.2
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.2e-08 64.3 48 56.2
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 5.6e-06 55.5 49 44.9
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 9.5e-06 54.7 204 27.0


User provided reference genes

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