Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p36620 Brassica napus HOM05D000198 ORTHO05D098523 3.8e-30 134.0 62 100.0
BolC2t09659H Brassica oleracea HOM05D000924 ORTHO05D001209 1.7e-09 65.5 64 59.4
BraA02t07284Z Brassica rapa HOM05D000198 ORTHO05D042445 2.2e-09 65.1 63 58.7
A02p22830 Brassica napus HOM05D000198 ORTHO05D042445 3.7e-09 64.3 57 63.2
Aa31LG4G1580 Aethionema arabicum HOM05D000198 ORTHO05D005702 4.1e-08 60.8 77 49.4
Carub.0002s2630 Capsella rubella HOM05D000198 ORTHO05D005702 4.1e-08 60.8 84 44.0
Thhalv10018394m.g Eutrema salsugineum HOM05D000198 ORTHO05D005702 4.1e-08 60.8 84 44.0
AL2G40050 Arabidopsis lyrata HOM05D000198 ORTHO05D005702 7.1e-08 60.1 84 42.9
AT1G79440 Arabidopsis thaliana HOM05D000198 ORTHO05D005702 7.1e-08 60.1 84 42.9
BcaC08g47505 Brassica carinata HOM05D000198 ORTHO05D005702 7.1e-08 60.1 84 42.9
A07p44510 Brassica napus HOM05D000198 ORTHO05D005702 7.1e-08 60.1 84 42.9
C06p53340 Brassica napus HOM05D000198 ORTHO05D005702 7.1e-08 60.1 84 42.9
BolC6t40351H Brassica oleracea HOM05D000198 ORTHO05D005702 7.1e-08 60.1 84 42.9
BraA07t31961Z Brassica rapa HOM05D000198 ORTHO05D005702 7.1e-08 60.1 84 42.9
Sp5g34490 Schrenkiella parvula HOM05D000198 ORTHO05D005702 7.1e-08 60.1 84 42.9
Prupe.4G128100 Prunus persica HOM05D000198 ORTHO05D005702 1.2e-07 59.3 84 42.9
MD10G1216600 Malus domestica HOM05D000198 ORTHO05D005702 2.1e-07 58.5 86 44.2
Dinv42461 Davidia involucrata HOM05D000198 ORTHO05D005702 2.7e-07 58.2 84 44.0
Duzib213G0040 Durio zibethinus HOM05D000198 ORTHO05D005702 2.7e-07 58.2 84 41.7
MD05G1238300 Malus domestica HOM05D000198 ORTHO05D005702 2.7e-07 58.2 84 41.7
THA.LOC104808138 Tarenaya hassleriana HOM05D000198 ORTHO05D005702 2.7e-07 58.2 84 42.9
Duzib268G0428 Durio zibethinus HOM05D000198 ORTHO05D005702 3.5e-07 57.8 84 41.7
TAR626G1240 Trochodendron aralioides HOM05D000198 ORTHO05D005702 3.5e-07 57.8 84 41.7
GSVIVG01036719001 Vitis vinifera HOM05D000198 ORTHO05D005702 3.5e-07 57.8 84 42.9
Lj2A9G44 Lonicera japonica HOM05D000198 ORTHO05D005702 4.6e-07 57.4 86 43.0
PSO384G4748 Papaver somniferum HOM05D000198 ORTHO05D005702 4.6e-07 57.4 84 40.5
Actinidia12753 Actinidia chinensis HOM05D000198 ORTHO05D005702 6.0e-07 57.0 84 42.9
CiPaw.11G057000 Carya illinoinensis HOM05D000198 ORTHO05D005702 6.0e-07 57.0 84 44.0
Eucgr.F04474 Eucalyptus grandis HOM05D000198 ORTHO05D005702 6.0e-07 57.0 84 40.5
HanXRQChr11g0335851 Helianthus annuus HOM05D000198 ORTHO05D005702 6.0e-07 57.0 86 44.2
HanXRQChr11g0335861 Helianthus annuus HOM05D000198 ORTHO05D005702 6.0e-07 57.0 86 44.2
TPR.G28436 Trifolium pratense HOM05D000198 ORTHO05D005702 6.0e-07 57.0 84 44.0
Cpa.g.sc32.93 Carica papaya HOM05D000198 ORTHO05D005702 7.8e-07 56.6 84 40.5
Migut.M01503 Erythranthe guttata HOM05D000198 ORTHO05D005702 7.8e-07 56.6 84 39.3
Manes.16G048100 Manihot esculenta HOM05D000198 ORTHO05D005702 7.8e-07 56.6 84 40.5
PGR031G3164 Punica granatum HOM05D000198 ORTHO05D005702 7.8e-07 56.6 84 39.3
Thecc.07G192200 Theobroma cacao HOM05D000198 ORTHO05D005702 7.8e-07 56.6 84 41.7
MSTRG.7092 Avicennia marina HOM05D000198 ORTHO05D005702 1.0e-06 56.2 86 41.9
Cfa019371 Carpinus fangiana HOM05D000198 ORTHO05D005702 1.0e-06 56.2 84 40.5
Nn8g40255 Nelumbo nucifera HOM05D000198 ORTHO05D005702 1.0e-06 56.2 84 39.3
SMO364G0446 Selaginella moellendorffii HOM05D000198 ORTHO05D005702 1.0e-06 56.2 84 44.0
HanXRQChr07g0190721 Helianthus annuus HOM05D000198 ORTHO05D005702 1.3e-06 55.8 84 42.9
HanXRQChr13g0419821 Helianthus annuus HOM05D000198 ORTHO05D005702 1.3e-06 55.8 84 42.9
Rhsim06G0244300 Rhododendron simsii HOM05D000198 ORTHO05D005702 1.3e-06 55.8 84 44.0
Atru.chr1.55 Acer truncatum HOM05D000198 ORTHO05D005702 1.7e-06 55.5 84 39.3
Aqoxy1G01365 Aquilegia oxysepala HOM05D000198 ORTHO05D005702 1.7e-06 55.5 84 39.3
TWI38G0157 Tripterygium wilfordii HOM05D000198 ORTHO05D005702 1.7e-06 55.5 84 39.3
unitig_26.g10057 Utricularia gibba HOM05D000198 ORTHO05D005702 1.7e-06 55.5 84 40.5
CSS0002476 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D005702 2.3e-06 55.1 84 42.9
Medtr2g067660 Medicago truncatula HOM05D000198 ORTHO05D005702 2.3e-06 55.1 78 44.9
TWI38G1970 Tripterygium wilfordii HOM05D000198 ORTHO05D005702 2.3e-06 55.1 84 38.1
arahy.Tifrunner.gnm1.ann1.15VWWC Arachis hypogaea HOM05D000198 ORTHO05D005702 3.0e-06 54.7 78 43.6
arahy.Tifrunner.gnm1.ann1.D1NSDN Arachis hypogaea HOM05D000198 ORTHO05D005702 3.0e-06 54.7 78 43.6
QL04p094021 Quercus lobata HOM05D000198 ORTHO05D005702 3.0e-06 54.7 84 39.3
Haze_07763 Corylus avellana HOM05D000198 ORTHO05D005702 3.9e-06 54.3 84 39.3
ECA236G0201 Erigeron canadensis HOM05D000198 ORTHO05D005702 3.9e-06 54.3 84 39.3
Glyma.08G163700 Glycine max HOM05D000198 ORTHO05D005702 3.9e-06 54.3 78 44.9
HanXRQChr11g0335841 Helianthus annuus HOM05D000198 ORTHO05D005702 3.9e-06 54.3 85 40.0
Nitab4.5_0000194g0150 Nicotiana tabacum HOM05D000198 ORTHO05D005702 3.9e-06 54.3 86 40.7
Psat1g015240 Pisum sativum HOM05D000198 ORTHO05D005702 5.1e-06 53.9 78 43.6
DCAR_004554 Daucus carota HOM05D000198 ORTHO05D005702 6.6e-06 53.5 78 41.0
HanXRQChr07g0190661 Helianthus annuus HOM05D000198 ORTHO05D005702 6.6e-06 53.5 78 41.0
Peaxi162Scf00117g00003 Petunia axillaris HOM05D000198 ORTHO05D005702 6.6e-06 53.5 84 38.1
Sc06g0002010 Simmondsia chinensis HOM05D000198 ORTHO05D005702 6.6e-06 53.5 84 40.5
Ca_03179_v3 Cicer arietinum L. HOM05D000198 ORTHO05D005702 8.6e-06 53.1 78 43.6
Glyma.15G263500 Glycine max HOM05D000198 ORTHO05D005702 8.6e-06 53.1 80 43.8
Gohir.A01G100200 Gossypium hirsutum HOM05D000198 ORTHO05D005702 8.6e-06 53.1 84 36.9
Gohir.D01G084900 Gossypium hirsutum HOM05D000198 ORTHO05D005702 8.6e-06 53.1 84 36.9
Gorai.002G110500 Gossypium raimondii HOM05D000198 ORTHO05D005702 8.6e-06 53.1 84 36.9
Hma1.2p1_0334F.1_g128390 Hydrangea macrophylla HOM05D000198 ORTHO05D005702 8.6e-06 53.1 84 39.3
Hma1.2p1_1896F.1_g306840 Hydrangea macrophylla HOM05D000198 ORTHO05D005702 8.6e-06 53.1 84 39.3
Lsat_1_v5_gn_7_110980 Lactuca sativa HOM05D000198 ORTHO05D005702 8.6e-06 53.1 84 36.9
Lj3g0005942 Lotus japonicus HOM05D000198 ORTHO05D005702 8.6e-06 53.1 78 41.0
Nitab4.5_0013063g0020 Nicotiana tabacum HOM05D000198 ORTHO05D005702 8.6e-06 53.1 86 39.5
Phvul.005G048150 Phaseolus vulgaris HOM05D000198 ORTHO05D005702 8.6e-06 53.1 78 43.6
SalBow8G1239 Salvia bowleyana HOM05D000198 ORTHO05D005702 8.6e-06 53.1 84 42.9
SalBow8G3664 Salvia bowleyana HOM05D000198 ORTHO05D005702 8.6e-06 53.1 84 42.9
unitig_749.g13691 Utricularia gibba HOM05D000198 ORTHO05D005702 8.6e-06 53.1 38 65.8


User provided reference genes

Program Settings