Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p31820 Brassica napus HOM05D003384 ORTHO05D032993 3.5e-31 137.5 63 100.0
A02p19230 Brassica napus HOM05D003384 ORTHO05D032993 6.7e-30 133.3 61 98.4
BolC2t09209H Brassica oleracea HOM05D003384 ORTHO05D032993 1.1e-21 105.9 49 98.0
BcaC03g15493 Brassica carinata HOM05D002057 ORTHO05D002231 1.5e-13 79.0 34 100.0
BcaC08g45597 Brassica carinata HOM05D003384 ORTHO05D005024 1.4e-11 72.4 37 83.8
BcaC08g46858 Brassica carinata HOM05D003384 ORTHO05D005024 1.4e-11 72.4 37 83.8
A07p29480 Brassica napus HOM05D003384 ORTHO05D005024 1.4e-11 72.4 37 83.8
A07p40090 Brassica napus HOM05D003384 ORTHO05D005024 1.4e-11 72.4 37 83.8
C06p33470 Brassica napus HOM05D003384 ORTHO05D005024 1.4e-11 72.4 37 83.8
C06p48450 Brassica napus HOM05D003384 ORTHO05D005024 1.4e-11 72.4 37 83.8
BolC6t38461H Brassica oleracea HOM05D003384 ORTHO05D005024 1.4e-11 72.4 37 83.8
BolC6t39873H Brassica oleracea HOM05D003384 ORTHO05D005024 1.4e-11 72.4 37 83.8
BraA07t30586Z Brassica rapa HOM05D003384 ORTHO05D005024 1.4e-11 72.4 37 83.8
BraA07t31553Z Brassica rapa HOM05D003384 ORTHO05D005024 1.4e-11 72.4 37 83.8
AL2G34140 Arabidopsis lyrata HOM05D003384 ORTHO05D005024 3.1e-11 71.2 37 81.1
AT1G74260 Arabidopsis thaliana HOM05D003384 ORTHO05D005024 3.1e-11 71.2 37 81.1
Carub.0002s2105 Capsella rubella HOM05D003384 ORTHO05D005024 3.1e-11 71.2 37 81.1
CARHR067520 Cardamine hirsuta HOM05D003384 ORTHO05D005024 3.1e-11 71.2 37 81.1
Thhalv10018011m.g Eutrema salsugineum HOM05D003384 ORTHO05D005024 3.1e-11 71.2 37 81.1
Sp5g29440 Schrenkiella parvula HOM05D003384 ORTHO05D005024 3.1e-11 71.2 37 81.1
ClCG07G004540 Citrullus lanatus HOM05D003384 ORTHO05D005024 9.1e-11 69.7 37 75.7
THA.LOC104816583 Tarenaya hassleriana HOM05D003384 ORTHO05D005024 9.1e-11 69.7 37 75.7
arahy.Tifrunner.gnm1.ann1.Z31J18 Arachis hypogaea HOM05D003384 ORTHO05D005024 1.2e-10 69.3 38 71.1
Lj2g0004466 Lotus japonicus HOM05D003384 ORTHO05D005024 1.2e-10 69.3 38 71.1
Lj6g0002532 Lotus japonicus HOM05D003384 ORTHO05D005024 1.2e-10 69.3 38 71.1
Gohir.A04G076000 Gossypium hirsutum HOM05D003384 ORTHO05D005024 1.5e-10 68.9 38 71.1
Lj1C941G12 Lonicera japonica HOM05D003384 ORTHO05D005024 1.5e-10 68.9 37 75.7
CSS0027778 Camellia sinensis var. sinensis HOM05D003384 ORTHO05D005024 2.0e-10 68.6 37 75.7
CSS0047277 Camellia sinensis var. sinensis HOM05D003384 ORTHO05D005024 2.0e-10 68.6 37 75.7
COL.COLO4_27063 Corchorus olitorius HOM05D003384 ORTHO05D005024 2.0e-10 68.6 37 75.7
Hma1.2p1_0998F.1_g246010 Hydrangea macrophylla HOM05D003384 ORTHO05D005024 2.0e-10 68.6 37 73.0
Aa31LG7G13860 Aethionema arabicum HOM05D003384 ORTHO05D005024 2.6e-10 68.2 37 73.0
CsaV3_5G010490 Cucumis sativus L. HOM05D003384 ORTHO05D005024 2.6e-10 68.2 37 73.0
Dinv10579 Davidia involucrata HOM05D003384 ORTHO05D005024 2.6e-10 68.2 37 73.0
Dinv42277 Davidia involucrata HOM05D003384 ORTHO05D005024 2.6e-10 68.2 37 73.0
Eucgr.I00206 Eucalyptus grandis HOM05D003384 ORTHO05D005024 2.6e-10 68.2 37 73.0
Lalb_Chr15g0084621 Lupinus albus HOM05D003384 ORTHO05D005024 2.6e-10 68.2 37 73.0
Manes.10G027300 Manihot esculenta HOM05D003384 ORTHO05D005024 2.6e-10 68.2 37 73.0
Potri.010G200200 Populus trichocarpa HOM05D003384 ORTHO05D005024 2.6e-10 68.2 37 75.7
Sabra10G0154400 Salix brachista HOM05D003384 ORTHO05D005024 2.6e-10 68.2 37 75.7
MBI14_g11677_MAGBIO Magnolia biondii HOM05D003384 ORTHO05D005024 3.4e-10 67.8 38 73.7
Rhsim08G0242600 Rhododendron simsii HOM05D003384 ORTHO05D005024 3.4e-10 67.8 37 73.0
Rhsim10G0184100 Rhododendron simsii HOM05D003384 ORTHO05D005024 3.4e-10 67.8 37 73.0
Duzib093G0913 Durio zibethinus HOM05D003384 ORTHO05D005024 4.5e-10 67.4 37 73.0
Gohir.A06G008900 Gossypium hirsutum HOM05D003384 ORTHO05D005024 4.5e-10 67.4 37 73.0
Gohir.D04G115100 Gossypium hirsutum HOM05D003384 ORTHO05D005024 4.5e-10 67.4 37 73.0
Gorai.009G419700 Gossypium raimondii HOM05D003384 ORTHO05D005024 4.5e-10 67.4 37 73.0
Thecc.05G055600 Theobroma cacao HOM05D003384 ORTHO05D005024 4.5e-10 67.4 37 73.0
Ciclev10030516m.g Citrus clementina HOM05D003384 ORTHO05D005024 5.9e-10 67.0 37 73.0
MELO3C018382.2 Cucumis melo HOM05D003384 ORTHO05D005024 5.9e-10 67.0 37 70.3
Glyma.18G036300 Glycine max HOM05D003384 ORTHO05D005024 5.9e-10 67.0 38 68.4
Prupe.1G542100 Prunus persica HOM05D003384 ORTHO05D005024 5.9e-10 67.0 37 70.3
Prupe.8G024000 Prunus persica HOM05D003384 ORTHO05D005024 5.9e-10 67.0 37 70.3
RcHm_v2.0_Chr7g0204141 Rosa chinensis HOM05D003384 ORTHO05D005024 5.9e-10 67.0 37 73.0
Sc09g0005970 Simmondsia chinensis HOM05D003384 ORTHO05D005024 5.9e-10 67.0 37 70.3
Ah.03g145450 Amaranthus hybridus HOM05D003384 ORTHO05D005024 7.7e-10 66.6 37 73.0
CAN.G606.41 Capsicum annuum HOM05D003384 ORTHO05D005024 7.7e-10 66.6 37 73.0
Cfa001433 Carpinus fangiana HOM05D003384 ORTHO05D005024 7.7e-10 66.6 37 70.3
Haze_17110 Corylus avellana HOM05D003384 ORTHO05D005024 7.7e-10 66.6 37 70.3
ECA246G5320 Erigeron canadensis HOM05D003384 ORTHO05D005024 7.7e-10 66.6 38 68.4
Lalb_Chr18g0053121 Lupinus albus HOM05D003384 ORTHO05D005024 7.7e-10 66.6 38 68.4
QL08p061129 Quercus lobata HOM05D003384 ORTHO05D005024 7.7e-10 66.6 37 70.3
PGSC0003DMG400025849 Solanum tuberosum HOM05D003384 ORTHO05D005024 7.7e-10 66.6 37 73.0
EL10Ac2g04005 Beta vulgaris HOM05D003384 ORTHO05D005024 1.0e-09 66.2 37 70.3
MD03G1203100 Malus domestica HOM05D003384 ORTHO05D005024 1.0e-09 66.2 37 70.3
MD04G1022300 Malus domestica HOM05D003384 ORTHO05D005024 1.0e-09 66.2 37 70.3
PGR004G0663 Punica granatum HOM05D003384 ORTHO05D005024 1.0e-09 66.2 37 73.0
TPR.G25489 Trifolium pratense HOM05D003384 ORTHO05D005024 1.0e-09 66.2 38 65.8
Zm00001eb055170 Zea mays HOM05D003384 ORTHO05D005024 1.0e-09 66.2 38 68.4
Actinidia02926 Actinidia chinensis HOM05D003384 ORTHO05D005024 1.3e-09 65.9 37 73.0
Aqoxy1G00556 Aquilegia oxysepala HOM05D003384 ORTHO05D005024 1.3e-09 65.9 37 73.0
Medtr3g085010 Medicago truncatula HOM05D003384 ORTHO05D005024 1.3e-09 65.9 38 65.8
PSO478G4441 Papaver somniferum HOM05D003384 ORTHO05D005024 1.3e-09 65.9 37 70.3
CiPaw.01G290900 Carya illinoinensis HOM05D003384 ORTHO05D005024 1.7e-09 65.5 37 67.6
Nitab4.5_0000333g0100 Nicotiana tabacum HOM05D003384 ORTHO05D005024 1.7e-09 65.5 37 70.3
Nitab4.5_0001169g0010 Nicotiana tabacum HOM05D003384 ORTHO05D005024 1.7e-09 65.5 37 70.3
PSO782G4051 Papaver somniferum HOM05D003384 ORTHO05D005024 1.7e-09 65.5 37 70.3
TAR633G2052 Trochodendron aralioides HOM05D003384 ORTHO05D005024 1.7e-09 65.5 37 70.3
Cpa.g.c38225 Carica papaya HOM05D003384 ORTHO05D005024 2.2e-09 65.1 37 70.3
DCAR_011724 Daucus carota HOM05D003384 ORTHO05D005024 2.2e-09 65.1 37 70.3
SalBow6G5500 Salvia bowleyana HOM05D003384 ORTHO05D005024 2.2e-09 65.1 37 67.6
SMO358G0063 Selaginella moellendorffii HOM05D003384 ORTHO05D005024 2.2e-09 65.1 37 73.0
FAN08G1276 Fragaria x ananassa HOM05D003384 ORTHO05D005024 2.9e-09 64.7 37 70.3
Medtr6g011360 Medicago truncatula HOM05D003384 ORTHO05D005024 2.9e-09 64.7 38 63.2
Medtr8g100045 Medicago truncatula HOM05D003384 ORTHO05D005024 2.9e-09 64.7 38 63.2
Psat7g023040 Pisum sativum HOM05D003384 ORTHO05D005024 2.9e-09 64.7 38 63.2
HPP92_005602 Vanilla planifolia HOM05D003384 ORTHO05D005024 2.9e-09 64.7 38 65.8
Ca_17447_v3 Cicer arietinum L. HOM05D003384 ORTHO05D005024 3.8e-09 64.3 38 63.2
Ca_30022_v3 Cicer arietinum L. HOM05D003384 ORTHO05D005024 3.8e-09 64.3 38 63.2
FvH4_5g19530 Fragaria vesca HOM05D003384 ORTHO05D005024 3.8e-09 64.3 37 70.3
FAN04G2139 Fragaria x ananassa HOM05D003384 ORTHO05D005024 3.8e-09 64.3 37 70.3
FAN13G0754 Fragaria x ananassa HOM05D003384 ORTHO05D005024 3.8e-09 64.3 37 70.3
FAN18G2272 Fragaria x ananassa HOM05D003384 ORTHO05D005024 3.8e-09 64.3 37 70.3
FAN18G2911 Fragaria x ananassa HOM05D003384 ORTHO05D005024 3.8e-09 64.3 37 70.3
Glyma.11G221100 Glycine max HOM05D003384 ORTHO05D005024 3.8e-09 64.3 38 65.8
HanXRQChr05g0161141 Helianthus annuus HOM05D003384 ORTHO05D005024 3.8e-09 64.3 37 70.3
PSO837G0041 Papaver somniferum HOM05D003384 ORTHO05D005024 3.8e-09 64.3 37 67.6
Sed0002627 Sechium edule HOM05D003384 ORTHO05D005024 3.8e-09 64.3 37 67.6
TWI18G1054 Tripterygium wilfordii HOM05D003384 ORTHO05D005024 3.8e-09 64.3 37 64.9
ATR0580G036 Amborella trichopoda HOM05D003384 ORTHO05D005024 5.0e-09 63.9 38 63.2
Lsat_1_v5_gn_6_96581 Lactuca sativa HOM05D003384 ORTHO05D005024 5.0e-09 63.9 36 72.2
Solyc02g076720.3 Solanum lycopersicum HOM05D003384 ORTHO05D005024 5.0e-09 63.9 37 64.9
Sopen02g021650 Solanum pennellii HOM05D003384 ORTHO05D005024 5.0e-09 63.9 37 64.9
PGSC0003DMG400010235 Solanum tuberosum HOM05D003384 ORTHO05D005024 5.0e-09 63.9 37 64.9
TPR.G18022 Trifolium pratense HOM05D003384 ORTHO05D005024 5.0e-09 63.9 38 63.2
Cc07_g16480 Coffea canephora HOM05D003384 ORTHO05D005024 6.5e-09 63.5 61 47.5
Os01g0888500 Oryza sativa ssp. japonica HOM05D003384 ORTHO05D005024 6.5e-09 63.5 38 65.8
Hund07041 Selenicereus undatus HOM05D003384 ORTHO05D005024 6.5e-09 63.5 37 67.6
Sc09g0006010 Simmondsia chinensis HOM05D003384 ORTHO05D005024 6.5e-09 63.5 37 67.6
AUR62034627 Chenopodium quinoa HOM05D003384 ORTHO05D005024 8.5e-09 63.2 54 53.7
ClCG07G004570 Citrullus lanatus HOM05D003384 ORTHO05D005024 8.5e-09 63.2 37 64.9
HanXRQChr08g0232581 Helianthus annuus HOM05D003384 ORTHO05D005024 8.5e-09 63.2 37 64.9
Os05g0104650 Oryza sativa ssp. japonica HOM05D003384 ORTHO05D005024 8.5e-09 63.2 38 65.8
Phvul.009G004700 Phaseolus vulgaris HOM05D003384 ORTHO05D005024 8.5e-09 63.2 38 63.2
Solyc01g107270.4 Solanum lycopersicum HOM05D003384 ORTHO05D005024 8.5e-09 63.2 38 65.8
VMungo1309G0201 Vigna mungo HOM05D003384 ORTHO05D005024 8.5e-09 63.2 38 63.2
Aqoxy5G02953 Aquilegia oxysepala HOM05D003384 ORTHO05D005024 1.1e-08 62.8 37 70.3
AUR62002272 Chenopodium quinoa HOM05D003384 ORTHO05D005024 1.1e-08 62.8 37 67.6
AUR62009268 Chenopodium quinoa HOM05D003384 ORTHO05D005024 1.1e-08 62.8 54 53.7
CAN.G370.86 Capsicum annuum HOM05D003384 ORTHO05D005024 1.4e-08 62.4 37 64.9
Peaxi162Scf00668g00439 Petunia axillaris HOM05D003384 ORTHO05D005024 1.4e-08 62.4 37 64.9
CDE05G1365 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 1.9e-08 62.0 36 69.4
Migut.F00756 Erythranthe guttata HOM05D003384 ORTHO05D005024 1.9e-08 62.0 37 62.2
Sopen01g049520 Solanum pennellii HOM05D003384 ORTHO05D005024 1.9e-08 62.0 38 65.8
unitig_0.g1015 Utricularia gibba HOM05D003384 ORTHO05D005024 1.9e-08 62.0 37 62.2
Oeu001502.2 Olea europaea HOM05D003384 ORTHO05D005024 2.5e-08 61.6 37 64.9
SalBow6G5425 Salvia bowleyana HOM05D003384 ORTHO05D005024 2.5e-08 61.6 37 62.2
Cfa014646 Carpinus fangiana HOM05D003384 ORTHO05D005024 3.2e-08 61.2 37 64.9
AUR62042439 Chenopodium quinoa HOM05D003384 ORTHO05D005024 3.2e-08 61.2 37 67.6
SalBow2G3548 Salvia bowleyana HOM05D003384 ORTHO05D005024 3.2e-08 61.2 37 62.2
CDE05G0219 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 4.2e-08 60.8 36 66.7
Zm00001eb067720 Zea mays HOM05D003384 ORTHO05D005024 4.2e-08 60.8 38 63.2
Mapoly0047s0031 Marchantia polymorpha HOM05D003384 ORTHO05D005024 5.5e-08 60.5 35 68.6
SEGI_27631 Sequoiadendron giganteum HOM05D003384 ORTHO05D005024 9.4e-08 59.7 37 64.9
SEGI_36858 Sequoiadendron giganteum HOM05D003384 ORTHO05D005024 9.4e-08 59.7 37 64.9
SGA_v2.0_scaffold2G01034 Striga asiatica HOM05D003384 ORTHO05D005024 9.4e-08 59.7 37 59.5
Cc04_g11240 Coffea canephora HOM05D003384 ORTHO05D005024 1.2e-07 59.3 61 44.3
Phvul.001G234500 Phaseolus vulgaris HOM05D003384 ORTHO05D005024 1.2e-07 59.3 38 57.9
Lj8C80T4 Lonicera japonica HOM05D003384 ORTHO05D005024 1.6e-07 58.9 37 62.2
Pp3c6_8600 Physcomitrium patens HOM05D003384 ORTHO05D005024 3.6e-07 57.8 37 62.2
VMungo1383G2986 Vigna mungo HOM05D003384 ORTHO05D005024 3.6e-07 57.8 38 55.3
CBR_g19873 Chara braunii HOM05D003384 ORTHO05D005024 2.3e-06 55.1 36 63.9


User provided reference genes

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