Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 2.1e-94 349.0 173 100.0
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 4.6e-73 278.1 170 82.4
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 4.3e-55 218.4 201 56.2
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 1.6e-54 216.5 193 57.5
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 4.8e-54 214.9 201 55.2
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.1e-53 213.8 199 55.8
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 5.3e-53 211.5 192 57.3
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 9.0e-53 210.7 192 56.2
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 2.6e-52 209.1 192 56.2
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 3.4e-52 208.8 193 56.0
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 3.4e-52 208.8 193 56.0
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 3.4e-52 208.8 193 56.0
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 3.4e-52 208.8 193 56.0
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 3.4e-52 208.8 193 56.0
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 3.4e-52 208.8 193 56.5
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 5.8e-52 208.0 197 54.8
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 1.0e-51 207.2 193 55.4
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 2.9e-51 205.7 187 55.6
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.1e-50 203.8 191 55.0
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.4e-50 203.4 187 54.5
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.6e-49 199.9 130 72.3
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 7.9e-49 197.6 123 71.5
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.1e-47 193.7 131 70.2
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 1.9e-47 193.0 199 52.8
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 2.5e-47 192.6 123 72.4
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.6e-46 189.9 123 69.9
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 2.2e-46 189.5 123 69.9
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 2.2e-46 189.5 131 68.7
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 4.8e-46 188.3 123 71.5
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 6.3e-46 188.0 131 67.2
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 6.3e-46 188.0 192 50.0
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 6.3e-46 188.0 123 70.7
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 1.1e-45 187.2 123 69.9
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 1.1e-45 187.2 131 67.9
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 1.4e-45 186.8 123 69.1
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 1.8e-45 186.4 131 67.2
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 2.4e-45 186.0 123 69.9
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 3.1e-45 185.7 123 70.7
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 5.3e-45 184.9 123 69.1
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 6.9e-45 184.5 123 67.5
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 6.9e-45 184.5 127 67.7
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 9.0e-45 184.1 121 69.4
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 1.5e-44 183.3 131 66.4
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 1.5e-44 183.3 123 69.1
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 2.6e-44 182.6 123 66.7
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 2.6e-44 182.6 131 65.6
A02p18790 Brassica napus HOM05D003766 ORTHO05D004607 4.5e-44 181.8 98 92.9
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.0e-43 180.6 123 66.7
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 6.5e-43 177.9 131 63.4
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 9.4e-42 174.1 130 61.5
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 3.6e-41 172.2 149 59.1
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 1.4e-40 170.2 131 63.4
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 3.0e-40 169.1 133 60.9
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 3.9e-40 168.7 123 64.2
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 5.7e-39 164.9 101 82.2
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 6.3e-38 161.4 202 45.5
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 8.2e-38 161.0 123 63.4
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 9.1e-37 157.5 118 62.7
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 2.0e-36 156.4 191 45.5
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.8e-35 152.1 122 57.4
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 4.2e-34 148.7 145 49.7
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 1.2e-33 147.1 131 55.0
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.2e-33 147.1 101 66.3
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 2.7e-33 146.0 119 58.8
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 7.9e-33 144.4 131 53.4
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 1.8e-32 143.3 131 53.4
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 2.3e-32 142.9 131 54.2
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 2.3e-32 142.9 122 56.6
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 3.9e-32 142.1 131 54.2
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 3.9e-32 142.1 131 52.7
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 6.7e-32 141.4 123 55.3
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 6.7e-32 141.4 123 55.3
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 6.7e-32 141.4 131 53.4
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 6.7e-32 141.4 131 53.4
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 7.4e-31 137.9 131 51.9
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 9.7e-31 137.5 131 51.9
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.3e-30 137.1 123 54.5
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 1.7e-30 136.7 131 53.4
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 1.7e-30 136.7 131 51.9
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 1.1e-29 134.0 131 51.9
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.4e-29 132.9 123 52.8
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 2.4e-29 132.9 131 51.1
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.4e-29 132.9 123 52.0
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 3.1e-29 132.5 131 50.4
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 4.1e-29 132.1 128 51.6
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 5.3e-29 131.7 131 51.1
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 7.0e-29 131.3 131 50.4
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 9.1e-29 131.0 123 51.2
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 1.2e-28 130.6 123 50.4
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 1.2e-28 130.6 123 49.6
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 2.0e-28 129.8 131 48.9
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 2.0e-28 129.8 131 48.9
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 2.6e-28 129.4 131 49.6
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 3.5e-28 129.0 131 48.9
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 3.5e-28 129.0 201 36.8
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 4.5e-28 128.6 122 52.5
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 7.7e-28 127.9 123 49.6
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 1.0e-27 127.5 131 48.1
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 1.3e-27 127.1 123 49.6
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 1.3e-27 127.1 123 49.6
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 2.2e-27 126.3 123 49.6
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 3.8e-27 125.6 123 49.6
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 3.8e-27 125.6 123 49.6
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 3.8e-27 125.6 123 49.6
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 3.8e-27 125.6 123 49.6
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 8.5e-27 124.4 123 49.6
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 1.1e-26 124.0 130 46.9
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 1.1e-26 124.0 123 48.8
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.9e-26 123.2 123 48.8
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 4.2e-26 122.1 131 45.8
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 9.4e-26 120.9 130 46.2
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 1.2e-25 120.6 123 46.3
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 4.7e-25 118.6 130 45.4
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 6.1e-25 118.2 123 45.5
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 1.8e-24 116.7 128 44.5
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 2.3e-24 116.3 127 44.9
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 4.0e-24 115.5 131 44.3
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 8.8e-24 114.4 131 43.5
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.1e-23 114.0 131 45.0
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 3.3e-23 112.5 123 45.5
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.7e-22 110.2 131 43.5
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 8.2e-22 107.8 131 43.5
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 1.8e-21 106.7 131 42.0
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 3.5e-20 102.4 131 41.2
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 4.5e-20 102.1 123 40.7
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.7e-19 100.1 64 71.9
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.1e-18 97.4 123 39.0
A02p18780 Brassica napus HOM05D003766 ORTHO05D004607 1.6e-17 93.6 82 63.4
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 4.7e-17 92.0 110 42.7
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 6.8e-16 88.2 45 91.1
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 6.8e-16 88.2 103 43.7
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 3.4e-15 85.9 105 46.7
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 4.4e-15 85.5 126 36.5
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 4.1e-13 79.0 68 55.9
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 4.1e-13 79.0 104 41.3
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 1.6e-12 77.0 44 70.5
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 2.0e-12 76.6 45 68.9
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 1.3e-11 73.9 98 41.8
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 3.8e-11 72.4 41 80.5
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 3.8e-11 72.4 45 64.4
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 8.5e-11 71.2 51 60.8
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-06 57.4 46 56.5


User provided reference genes

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