Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p27430 Brassica napus HOM05D000337 ORTHO05D024648 1.6e-45 185.7 89 100.0
BolC2t08803H Brassica oleracea HOM05D000337 ORTHO05D024648 5.3e-25 117.5 64 89.1
BcaB05g24542 Brassica carinata HOM05D000337 ORTHO05D000297 9.4e-22 106.7 60 85.0
A07p36680 Brassica napus HOM05D000337 ORTHO05D000297 4.0e-20 101.3 65 72.3
BraA07t31236Z Brassica rapa HOM05D000337 ORTHO05D000297 4.0e-20 101.3 65 72.3
A07p31160 Brassica napus HOM05D000337 ORTHO05D000297 5.7e-19 97.4 68 70.6
BraA07t30749Z Brassica rapa HOM05D000337 ORTHO05D000297 5.7e-19 97.4 68 70.6
BcaC08g45833 Brassica carinata HOM05D000337 ORTHO05D000297 7.5e-19 97.1 68 70.6
C06p36200 Brassica napus HOM05D000337 ORTHO05D000297 7.5e-19 97.1 68 70.6
BolC6t38740H Brassica oleracea HOM05D000337 ORTHO05D000297 7.5e-19 97.1 68 70.6
AL2G29530 Arabidopsis lyrata HOM05D000337 ORTHO05D000297 9.8e-19 96.7 69 65.2
BcaB03g15536 Brassica carinata HOM05D000337 ORTHO05D000297 9.8e-19 96.7 68 67.6
AT1G70230 Arabidopsis thaliana HOM05D000337 ORTHO05D000297 1.2e-16 89.7 69 60.9
CARHR063350 Cardamine hirsuta HOM05D000337 ORTHO05D000297 1.6e-16 89.4 71 57.7
BcaB03g14791 Brassica carinata HOM05D000337 ORTHO05D000297 5.9e-16 87.4 44 79.5
Carub.0002s1693 Capsella rubella HOM05D000337 ORTHO05D000297 1.3e-15 86.3 70 60.0
BcaC08g46469 Brassica carinata HOM05D000337 ORTHO05D000297 2.9e-15 85.1 63 65.1
C06p44080 Brassica napus HOM05D000337 ORTHO05D000297 2.9e-15 85.1 63 65.1
Thhalv10018613m.g Eutrema salsugineum HOM05D000337 ORTHO05D000297 5.0e-15 84.3 43 79.1
BolC6t39482H Brassica oleracea HOM05D000337 ORTHO05D000297 1.1e-14 83.2 42 81.0
Sp5g25360 Schrenkiella parvula HOM05D000337 ORTHO05D000297 1.9e-14 82.4 43 76.7
Hma1.2p1_1017F.1_g248260 Hydrangea macrophylla HOM05D000337 ORTHO05D000297 9.5e-14 80.1 58 58.6
GSVIVG01020160001 Vitis vinifera HOM05D000337 ORTHO05D000297 1.2e-13 79.7 56 60.7
TAR622G0645 Trochodendron aralioides HOM05D000337 ORTHO05D000297 3.6e-13 78.2 53 64.2
Manes.05G090300 Manihot esculenta HOM05D000337 ORTHO05D000297 1.4e-12 76.3 61 59.0
Potri.008G146100 Populus trichocarpa HOM05D000337 ORTHO05D000297 1.8e-12 75.9 59 57.6
Gohir.D05G320950 Gossypium hirsutum HOM05D000337 ORTHO05D000297 2.3e-12 75.5 40 72.5
AUR62005319 Chenopodium quinoa HOM05D000337 ORTHO05D000297 3.0e-12 75.1 45 64.4
AUR62013968 Chenopodium quinoa HOM05D000337 ORTHO05D000297 3.0e-12 75.1 45 64.4
Duzib251G0672 Durio zibethinus HOM05D000337 ORTHO05D000297 3.0e-12 75.1 58 51.7
COL.COLO4_19541 Corchorus olitorius HOM05D000337 ORTHO05D000297 4.0e-12 74.7 42 69.0
MD16G1088200 Malus domestica HOM05D000337 ORTHO05D000297 5.2e-12 74.3 50 56.0
Sabra08G0111100 Salix brachista HOM05D000337 ORTHO05D000297 5.2e-12 74.3 53 58.5
TWI18G0544 Tripterygium wilfordii HOM05D000337 ORTHO05D000297 5.2e-12 74.3 56 57.1
Dinv24895 Davidia involucrata HOM05D000337 ORTHO05D000297 6.8e-12 73.9 50 62.0
Gohir.A05G318700 Gossypium hirsutum HOM05D000337 ORTHO05D000297 6.8e-12 73.9 49 63.3
Gorai.009G344300 Gossypium raimondii HOM05D000337 ORTHO05D000297 6.8e-12 73.9 49 63.3
Phvul.002G073600 Phaseolus vulgaris HOM05D000337 ORTHO05D000297 6.8e-12 73.9 55 56.4
Hund25323 Selenicereus undatus HOM05D000337 ORTHO05D000297 6.8e-12 73.9 44 63.6
CiPaw.05G149200 Carya illinoinensis HOM05D000337 ORTHO05D000297 8.9e-12 73.6 51 56.9
Duzib268G1079 Durio zibethinus HOM05D000337 ORTHO05D000297 8.9e-12 73.6 64 53.1
TWI75G0341 Tripterygium wilfordii HOM05D000337 ORTHO05D000297 8.9e-12 73.6 46 63.0
Aa31LG4G10680 Aethionema arabicum HOM05D000337 ORTHO05D000297 1.2e-11 73.2 44 59.1
Actinidia08178 Actinidia chinensis HOM05D000337 ORTHO05D000297 1.5e-11 72.8 53 58.5
CSS0018280 Camellia sinensis var. sinensis HOM05D000337 ORTHO05D000297 2.0e-11 72.4 39 69.2
Cfa009128 Carpinus fangiana HOM05D000337 ORTHO05D000297 2.0e-11 72.4 67 52.2
DCAR_024531 Daucus carota HOM05D000337 ORTHO05D000297 2.0e-11 72.4 42 64.3
Nn3g16959 Nelumbo nucifera HOM05D000337 ORTHO05D000297 2.0e-11 72.4 57 50.9
PSO063G5445 Papaver somniferum HOM05D000337 ORTHO05D000297 2.0e-11 72.4 50 54.0
PSO832G4456 Papaver somniferum HOM05D000337 ORTHO05D000297 2.0e-11 72.4 50 58.0
EL10Ac6g13620 Beta vulgaris HOM05D000337 ORTHO05D000297 2.6e-11 72.0 45 62.2
Cpa.g.c35870 Carica papaya HOM05D000337 ORTHO05D000297 2.6e-11 72.0 49 55.1
Haze_12159 Corylus avellana HOM05D000337 ORTHO05D000297 2.6e-11 72.0 67 50.7
Eucgr.B03360 Eucalyptus grandis HOM05D000337 ORTHO05D000297 2.6e-11 72.0 39 66.7
Sabra10G0068300 Salix brachista HOM05D000337 ORTHO05D000297 2.6e-11 72.0 50 56.0
TAR374G0499 Trochodendron aralioides HOM05D000337 ORTHO05D000297 2.6e-11 72.0 51 60.8
Glyma.01G034300 Glycine max HOM05D000337 ORTHO05D000297 3.4e-11 71.6 51 56.9
Glyma.02G031900 Glycine max HOM05D000337 ORTHO05D000297 3.4e-11 71.6 57 50.9
Thecc.02G247900 Theobroma cacao HOM05D000337 ORTHO05D000297 3.4e-11 71.6 41 65.9
TPR.G4405 Trifolium pratense HOM05D000337 ORTHO05D000297 3.4e-11 71.6 54 51.9
Ciclev10033419m.g Citrus clementina HOM05D000337 ORTHO05D000297 4.4e-11 71.2 43 60.5
Cc11_g14340 Coffea canephora HOM05D000337 ORTHO05D000297 4.4e-11 71.2 39 64.1
Sed0006685 Sechium edule HOM05D000337 ORTHO05D000297 4.4e-11 71.2 59 55.9
Ah.03g132370 Amaranthus hybridus HOM05D000337 ORTHO05D000297 5.7e-11 70.9 44 65.9
Lj6P801T34 Lonicera japonica HOM05D000337 ORTHO05D000297 5.7e-11 70.9 63 44.4
MD13G1087900 Malus domestica HOM05D000337 ORTHO05D000297 5.7e-11 70.9 54 50.0
HanXRQChr08g0209001 Helianthus annuus HOM05D000337 ORTHO05D000297 7.5e-11 70.5 40 67.5
Aqoxy3G03070 Aquilegia oxysepala HOM05D000337 ORTHO05D000297 9.8e-11 70.1 63 54.0
CSS0007747 Camellia sinensis var. sinensis HOM05D000337 ORTHO05D000297 9.8e-11 70.1 38 68.4
CSS0044534 Camellia sinensis var. sinensis HOM05D000337 ORTHO05D000297 9.8e-11 70.1 38 68.4
CANSAT01G1548 Cannabis sativa HOM05D000337 ORTHO05D000297 9.8e-11 70.1 45 62.2
Gohir.A03G141900 Gossypium hirsutum HOM05D000337 ORTHO05D000297 1.3e-10 69.7 38 68.4
Gohir.D02G165100 Gossypium hirsutum HOM05D000337 ORTHO05D000297 1.3e-10 69.7 38 68.4
MBI15_g10559_MAGBIO Magnolia biondii HOM05D000337 ORTHO05D000297 1.3e-10 69.7 55 58.2
Prupe.1G258400 Prunus persica HOM05D000337 ORTHO05D000297 1.3e-10 69.7 50 54.0
Sc14g0008560 Simmondsia chinensis HOM05D000337 ORTHO05D000297 1.3e-10 69.7 40 70.0
Duzib248G0065 Durio zibethinus HOM05D000337 ORTHO05D000297 1.7e-10 69.3 38 68.4
ECA233G0671 Erigeron canadensis HOM05D000337 ORTHO05D000297 1.7e-10 69.3 64 50.0
Hund05967 Selenicereus undatus HOM05D000337 ORTHO05D000297 1.7e-10 69.3 52 53.8
ClCG05G025110 Citrullus lanatus HOM05D000337 ORTHO05D000297 2.2e-10 68.9 66 47.0
FAN07G0583 Fragaria x ananassa HOM05D000337 ORTHO05D000297 2.2e-10 68.9 45 57.8
Glyma.08G290300 Glycine max HOM05D000337 ORTHO05D000297 2.2e-10 68.9 56 51.8
Gorai.005G185000 Gossypium raimondii HOM05D000337 ORTHO05D000297 2.2e-10 68.9 38 68.4
Lalb_Chr09g0326461 Lupinus albus HOM05D000337 ORTHO05D000297 2.2e-10 68.9 69 47.8
Medtr5g035070 Medicago truncatula HOM05D000337 ORTHO05D000297 2.2e-10 68.9 54 50.0
Psat2g109400 Pisum sativum HOM05D000337 ORTHO05D000297 2.2e-10 68.9 54 50.0
PGR102G0695 Punica granatum HOM05D000337 ORTHO05D000297 2.2e-10 68.9 44 65.9
TAR629G1712 Trochodendron aralioides HOM05D000337 ORTHO05D000297 2.2e-10 68.9 38 73.7
Atru.chr11.1972 Acer truncatum HOM05D000337 ORTHO05D000297 2.8e-10 68.6 56 51.8
Ca_04622_v3 Cicer arietinum L. HOM05D000337 ORTHO05D000297 2.8e-10 68.6 38 63.2
Ca_26007_v3 Cicer arietinum L. HOM05D000337 ORTHO05D000297 2.8e-10 68.6 38 63.2
PGR102G0772 Punica granatum HOM05D000337 ORTHO05D000297 2.8e-10 68.6 39 71.8
QL03p062189 Quercus lobata HOM05D000337 ORTHO05D000297 2.8e-10 68.6 50 52.0
RcHm_v2.0_Chr4g0444361 Rosa chinensis HOM05D000337 ORTHO05D000297 2.8e-10 68.6 44 56.8
Nn4g22871 Nelumbo nucifera HOM05D000337 ORTHO05D000297 3.7e-10 68.2 50 58.0
arahy.Tifrunner.gnm1.ann1.2B31R0 Arachis hypogaea HOM05D000337 ORTHO05D000297 6.3e-10 67.4 43 58.1
arahy.Tifrunner.gnm1.ann1.87AMRL Arachis hypogaea HOM05D000337 ORTHO05D000297 6.3e-10 67.4 43 58.1
Lsat_1_v5_gn_8_159460 Lactuca sativa HOM05D000337 ORTHO05D000297 6.3e-10 67.4 45 55.6
Rhsim12G0048400 Rhododendron simsii HOM05D000337 ORTHO05D000297 6.3e-10 67.4 56 50.0
CsaV3_5G031790 Cucumis sativus L. HOM05D000337 ORTHO05D000297 8.3e-10 67.0 54 53.7
Dinv31004 Davidia involucrata HOM05D000337 ORTHO05D000297 8.3e-10 67.0 60 46.7
Dinv31099 Davidia involucrata HOM05D000337 ORTHO05D000297 8.3e-10 67.0 60 46.7
Psat7g164560 Pisum sativum HOM05D000337 ORTHO05D000297 8.3e-10 67.0 63 49.2
TPR.G4423 Trifolium pratense HOM05D000337 ORTHO05D000297 8.3e-10 67.0 65 41.5
Eucgr.B03363 Eucalyptus grandis HOM05D000337 ORTHO05D000297 1.1e-09 66.6 39 64.1
Phvul.002G073800 Phaseolus vulgaris HOM05D000337 ORTHO05D000297 1.1e-09 66.6 56 51.8
VMungo1215G1517 Vigna mungo HOM05D000337 ORTHO05D000297 1.1e-09 66.6 58 51.7
MELO3C012018.2 Cucumis melo HOM05D000337 ORTHO05D000297 1.4e-09 66.2 65 46.2
FvH4_4g34920 Fragaria vesca HOM05D000337 ORTHO05D000297 1.4e-09 66.2 38 65.8
FAN12G0970 Fragaria x ananassa HOM05D000337 ORTHO05D000297 1.4e-09 66.2 38 65.8
FAN17G1627 Fragaria x ananassa HOM05D000337 ORTHO05D000297 1.4e-09 66.2 38 65.8
FAN22G0983 Fragaria x ananassa HOM05D000337 ORTHO05D000297 1.4e-09 66.2 38 65.8
arahy.Tifrunner.gnm1.ann1.Q0TDT5 Arachis hypogaea HOM05D000337 ORTHO05D000297 1.8e-09 65.9 59 47.5
Potri.010G095700 Populus trichocarpa HOM05D000337 ORTHO05D000297 1.8e-09 65.9 43 58.1
Manes.01G197400 Manihot esculenta HOM05D000337 ORTHO05D000297 2.4e-09 65.5 52 53.8
Actinidia15013 Actinidia chinensis HOM05D000337 ORTHO05D000297 3.1e-09 65.1 38 63.2
arahy.Tifrunner.gnm1.ann1.C0Y5NS Arachis hypogaea HOM05D000337 ORTHO05D000297 3.1e-09 65.1 62 46.8
Medtr5g035090 Medicago truncatula HOM05D000337 ORTHO05D000297 4.1e-09 64.7 61 49.2
Gohir.A04G134700 Gossypium hirsutum HOM05D000337 ORTHO05D000297 5.4e-09 64.3 53 50.9
Lalb_Chr05g0217111 Lupinus albus HOM05D000337 ORTHO05D000297 5.4e-09 64.3 61 44.3
Gohir.D04G177900 Gossypium hirsutum HOM05D000337 ORTHO05D000297 7.0e-09 63.9 53 50.9
Gorai.012G170800 Gossypium raimondii HOM05D000337 ORTHO05D000297 7.0e-09 63.9 53 50.9
CDE10G0720 Ceratophyllum demersum HOM05D000337 ORTHO05D000297 9.2e-09 63.5 38 63.2
Lj2g0003835 Lotus japonicus HOM05D000337 ORTHO05D000297 9.2e-09 63.5 38 57.9
Rhsim12G0123200 Rhododendron simsii HOM05D000337 ORTHO05D000297 9.2e-09 63.5 41 58.5
SGA_v2.0_scaffold87G27007 Striga asiatica HOM05D000337 ORTHO05D000297 9.2e-09 63.5 66 47.0
Glyma.02G031800 Glycine max HOM05D000337 ORTHO05D000297 1.6e-08 62.8 38 65.8
Lj2g0014581 Lotus japonicus HOM05D000337 ORTHO05D000297 2.0e-08 62.4 67 41.8
Medtr5g035080 Medicago truncatula HOM05D000337 ORTHO05D000297 2.0e-08 62.4 53 45.3
SHI31617 Sapria himalayana HOM05D000337 ORTHO05D000297 2.0e-08 62.4 57 45.6
Os06g0235200 Oryza sativa ssp. japonica HOM05D000337 ORTHO05D000297 2.7e-08 62.0 38 63.2
MSTRG.13380 Avicennia marina HOM05D000337 ORTHO05D000297 3.5e-08 61.6 32 71.9
Nitab4.5_0004039g0020 Nicotiana tabacum HOM05D000337 ORTHO05D000297 3.5e-08 61.6 60 43.3
Phvul.002G073700 Phaseolus vulgaris HOM05D000337 ORTHO05D000297 1.0e-07 60.1 38 63.2
Phvul.002G074000 Phaseolus vulgaris HOM05D000337 ORTHO05D000297 1.0e-07 60.1 53 47.2
Glyma.01G034600 Glycine max HOM05D000337 ORTHO05D000297 1.3e-07 59.7 51 51.0
Nitab4.5_0000069g0430 Nicotiana tabacum HOM05D000337 ORTHO05D000297 1.3e-07 59.7 63 42.9
Psat2g109200 Pisum sativum HOM05D000337 ORTHO05D000297 1.7e-07 59.3 38 60.5
Sopen01g003610 Solanum pennellii HOM05D000337 ORTHO05D000297 1.7e-07 59.3 59 45.8
PGSC0003DMG400016405 Solanum tuberosum HOM05D000337 ORTHO05D000297 1.7e-07 59.3 59 45.8
Peaxi162Scf00952g00031 Petunia axillaris HOM05D000337 ORTHO05D000297 2.3e-07 58.9 58 43.1
TPR.G4385 Trifolium pratense HOM05D000337 ORTHO05D000297 2.9e-07 58.5 38 50.0
Zm00001eb098840 Zea mays HOM05D000337 ORTHO05D000297 2.9e-07 58.5 55 54.5
Lj2g0001314 Lotus japonicus HOM05D000337 ORTHO05D000297 5.0e-07 57.8 38 55.3
Lj2g0005803 Lotus japonicus HOM05D000337 ORTHO05D000297 5.0e-07 57.8 53 47.2
Lj2g0019819 Lotus japonicus HOM05D000337 ORTHO05D000297 5.0e-07 57.8 39 56.4
TPR.G4437 Trifolium pratense HOM05D000337 ORTHO05D000297 5.0e-07 57.8 64 42.2
vmacro18189 Vaccinium macrocarpon HOM05D000337 ORTHO05D000297 5.0e-07 57.8 38 52.6
Lj2g0024900 Lotus japonicus HOM05D000337 ORTHO05D000297 6.6e-07 57.4 51 45.1
Lj2g0000543 Lotus japonicus HOM05D000337 ORTHO05D000297 8.6e-07 57.0 68 41.2
Glyma.01G034900 Glycine max HOM05D000337 ORTHO05D000297 1.1e-06 56.6 49 49.0
Glyma.02G031100 Glycine max HOM05D000337 ORTHO05D000297 1.1e-06 56.6 55 45.5
Medtr5g035150 Medicago truncatula HOM05D000337 ORTHO05D000297 1.1e-06 56.6 61 41.0
Os09g0375300 Oryza sativa ssp. japonica HOM05D000337 ORTHO05D000297 1.1e-06 56.6 39 59.0
VMungo1215G0159 Vigna mungo HOM05D000337 ORTHO05D000297 1.1e-06 56.6 38 55.3
Psat2g107680 Pisum sativum HOM05D000337 ORTHO05D000297 1.5e-06 56.2 56 46.4
SalBow8G0532 Salvia bowleyana HOM05D000337 ORTHO05D000297 1.5e-06 56.2 39 53.8
Sed0021650 Sechium edule HOM05D000337 ORTHO05D000297 1.5e-06 56.2 38 55.3
Solyc01g008050.4 Solanum lycopersicum HOM05D000337 ORTHO05D000297 1.5e-06 56.2 57 43.9
AL7G49810 Arabidopsis lyrata HOM05D000337 ORTHO05D000297 1.9e-06 55.8 34 58.8
Psat2g109360 Pisum sativum HOM05D000337 ORTHO05D000297 2.5e-06 55.5 38 50.0
VMungo1215G3140 Vigna mungo HOM05D000337 ORTHO05D000297 2.5e-06 55.5 63 39.7
Rhsim12G0191700 Rhododendron simsii HOM05D000337 ORTHO05D000297 3.3e-06 55.1 52 34.6
Glyma.02G031200 Glycine max HOM05D000337 ORTHO05D000297 4.3e-06 54.7 58 44.8
Glyma.02G031400 Glycine max HOM05D000337 ORTHO05D000297 4.3e-06 54.7 57 43.9
Lj2g0006004 Lotus japonicus HOM05D000337 ORTHO05D000297 4.3e-06 54.7 49 49.0
Lj2g0025572 Lotus japonicus HOM05D000337 ORTHO05D000297 4.3e-06 54.7 55 43.6
Glyma.02G031300 Glycine max HOM05D000337 ORTHO05D000297 5.6e-06 54.3 59 45.8
TPR.G4393 Trifolium pratense HOM05D000337 ORTHO05D000297 5.6e-06 54.3 42 52.4
Lalb_Chr05g0217141 Lupinus albus HOM05D000337 ORTHO05D000297 7.3e-06 53.9 66 39.4
Medtr7g033230 Medicago truncatula HOM05D000337 ORTHO05D000297 7.3e-06 53.9 42 52.4
Migut.E00146 Erythranthe guttata HOM05D000337 ORTHO05D000297 9.5e-06 53.5 36 52.8
Glyma.01G034402 Glycine max HOM05D000337 ORTHO05D000297 9.5e-06 53.5 38 50.0
Lj2C1207T3 Lonicera japonica HOM05D000043 ORTHO05D000600 9.5e-06 53.5 58 41.4


User provided reference genes

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