Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p27270 Brassica napus HOM05D000629 ORTHO05D000576 7.2e-113 410.6 210 100.0
BolC2t08785H Brassica oleracea HOM05D000629 ORTHO05D000576 6.0e-83 311.2 238 74.4
BcaC03g15153 Brassica carinata HOM05D000629 ORTHO05D000576 2.5e-73 279.3 296 58.1
BraA02t06691Z Brassica rapa HOM05D000629 ORTHO05D000576 2.1e-64 249.6 213 67.6
C02p27260 Brassica napus HOM05D000629 ORTHO05D000576 1.0e-34 151.0 146 59.6
A02p16310 Brassica napus HOM05D000629 ORTHO05D000576 6.7e-34 148.3 146 58.2
BraA02t06689Z Brassica rapa HOM05D000629 ORTHO05D000576 6.7e-34 148.3 146 58.2
BcaB05g24520 Brassica carinata HOM05D000629 ORTHO05D000576 2.5e-33 146.4 130 64.6
C02p27220 Brassica napus HOM05D000629 ORTHO05D000576 5.7e-33 145.2 146 58.9
BolC2t08783H Brassica oleracea HOM05D000629 ORTHO05D000576 9.6e-33 144.4 146 58.2
A02p16300 Brassica napus HOM05D000629 ORTHO05D000576 1.6e-32 143.7 146 57.5
BraA02t06688Z Brassica rapa HOM05D000629 ORTHO05D000576 1.6e-32 143.7 146 57.5
Sp5g25180 Schrenkiella parvula HOM05D000629 ORTHO05D000576 1.6e-32 143.7 319 35.1
BcaC08g45844 Brassica carinata HOM05D000629 ORTHO05D000576 8.2e-32 141.4 304 35.9
BolC6t38755H Brassica oleracea HOM05D000629 ORTHO05D000576 8.2e-32 141.4 304 35.9
BcaB05g24518 Brassica carinata HOM05D000629 ORTHO05D000576 3.1e-31 139.4 233 43.8
A02p16340 Brassica napus HOM05D000629 ORTHO05D000576 4.1e-31 139.0 161 55.3
BcaB05g24517 Brassica carinata HOM05D000629 ORTHO05D000576 5.3e-31 138.7 146 56.8
C06p36350 Brassica napus HOM05D000629 ORTHO05D000576 2.0e-30 136.7 304 35.2
Thhalv10018014m.g Eutrema salsugineum HOM05D000629 ORTHO05D000576 4.5e-30 135.6 319 33.9
Carub.0002s1673 Capsella rubella HOM05D000629 ORTHO05D000576 7.6e-30 134.8 305 35.1
A07p31240 Brassica napus HOM05D000629 ORTHO05D000576 6.5e-29 131.7 298 34.2
C02p27240 Brassica napus HOM05D000629 ORTHO05D000576 6.5e-29 131.7 124 62.1
BcaB05g24516 Brassica carinata HOM05D000629 ORTHO05D000576 8.4e-29 131.3 133 59.4
BcaB03g15529 Brassica carinata HOM05D000629 ORTHO05D000576 1.4e-28 130.6 304 34.5
BcaB05g24515 Brassica carinata HOM05D000629 ORTHO05D000576 2.5e-28 129.8 133 58.6
BcaB05g24519 Brassica carinata HOM05D000629 ORTHO05D000576 4.2e-28 129.0 133 58.6
C02p27200 Brassica napus HOM05D000629 ORTHO05D000576 2.3e-26 123.2 124 59.7
AL2G29300 Arabidopsis lyrata HOM05D000629 ORTHO05D000576 3.0e-26 122.9 319 32.3
C06p43930 Brassica napus HOM05D000629 ORTHO05D000576 1.5e-25 120.6 310 33.2
BolC6t39465H Brassica oleracea HOM05D000629 ORTHO05D000576 1.5e-25 120.6 310 33.2
BcaC08g46454 Brassica carinata HOM05D000629 ORTHO05D000576 1.9e-25 120.2 310 32.9
AT1G70060 Arabidopsis thaliana HOM05D000629 ORTHO05D000576 2.5e-25 119.8 318 31.1
BolC2t08780H Brassica oleracea HOM05D000629 ORTHO05D000576 2.5e-25 119.8 122 59.8
BraA07t30756Z Brassica rapa HOM05D000629 ORTHO05D000576 3.3e-25 119.4 330 30.9
A07p36470 Brassica napus HOM05D000629 ORTHO05D000576 4.3e-25 119.0 310 32.9
BraA07t31218Z Brassica rapa HOM05D000629 ORTHO05D000576 4.3e-25 119.0 310 32.9
BcaB03g14783 Brassica carinata HOM05D000629 ORTHO05D000576 2.8e-24 116.3 315 32.4
BolC2t08782H Brassica oleracea HOM05D000629 ORTHO05D000576 4.1e-23 112.5 122 58.2
CARHR024590 Cardamine hirsuta HOM05D000629 ORTHO05D000576 2.2e-21 106.7 302 30.1
AL1G38020 Arabidopsis lyrata HOM05D000629 ORTHO05D000576 3.2e-20 102.8 306 30.1
AL1G36780 Arabidopsis lyrata HOM05D000629 ORTHO05D000576 1.4e-18 97.4 271 32.5
Carub.0001s2368 Capsella rubella HOM05D000629 ORTHO05D000576 1.1e-17 94.4 306 28.4
AT1G24190 Arabidopsis thaliana HOM05D000629 ORTHO05D000576 2.5e-17 93.2 306 29.4
Aa31LG7G7960 Aethionema arabicum HOM05D000629 ORTHO05D000576 5.3e-15 85.5 327 26.9
THA.LOC104822068 Tarenaya hassleriana HOM05D000629 ORTHO05D000576 5.0e-13 79.0 316 27.2
Sp5g25150 Schrenkiella parvula HOM05D000629 ORTHO05D000576 6.5e-13 78.6 144 36.1
Aa31LG4G10820 Aethionema arabicum HOM05D000629 ORTHO05D000576 1.4e-12 77.4 338 26.6
THA.LOC104808829 Tarenaya hassleriana HOM05D000629 ORTHO05D000576 3.2e-12 76.3 314 26.1
Sp5g25160 Schrenkiella parvula HOM05D000629 ORTHO05D000576 9.4e-12 74.7 145 35.9
BolC6t39461H Brassica oleracea HOM05D000629 ORTHO05D000576 2.0e-09 67.0 139 33.1
C06p43890 Brassica napus HOM05D000629 ORTHO05D000576 3.3e-09 66.2 139 33.8
Medtr6g008995 Medicago truncatula HOM05D000629 ORTHO05D000576 7.4e-09 65.1 274 27.4
DCAR_011183 Daucus carota HOM05D000629 ORTHO05D000576 1.7e-08 63.9 321 24.9
vmacro16299 Vaccinium macrocarpon HOM05D000629 ORTHO05D000576 2.8e-08 63.2 314 23.9
HPP92_003790 Vanilla planifolia HOM05D000629 ORTHO05D000576 2.8e-08 63.2 122 34.4
BcaB03g14781 Brassica carinata HOM05D000629 ORTHO05D000576 3.7e-08 62.8 147 32.0
Sp5g25140 Schrenkiella parvula HOM05D000629 ORTHO05D000576 3.7e-08 62.8 148 29.1
Duzib187G0377 Durio zibethinus HOM05D000629 ORTHO05D000576 8.2e-08 61.6 308 24.7
C02p27210 Brassica napus HOM05D021342 ORTHO05D024513 1.1e-07 61.2 77 49.4
C02p27250 Brassica napus HOM05D021342 ORTHO05D024513 1.1e-07 61.2 77 49.4
Oeu018662.3 Olea europaea HOM05D000629 ORTHO05D000576 1.4e-07 60.8 328 24.7
TAR622G0385 Trochodendron aralioides HOM05D000629 ORTHO05D000576 1.4e-07 60.8 144 29.2
Nn3g17050 Nelumbo nucifera HOM05D000629 ORTHO05D000576 2.4e-07 60.1 342 24.9
Rhsim12G0126800 Rhododendron simsii HOM05D000629 ORTHO05D000576 3.1e-07 59.7 313 23.3
MELO3C012036.2 Cucumis melo HOM05D000629 ORTHO05D000576 4.1e-07 59.3 251 26.7
CsaV3_5G032000 Cucumis sativus L. HOM05D000629 ORTHO05D000576 4.1e-07 59.3 251 26.7
Sp1g09080 Schrenkiella parvula HOM05D000629 ORTHO05D000576 4.1e-07 59.3 219 28.3
Sp5g25170 Schrenkiella parvula HOM05D000629 ORTHO05D000576 5.3e-07 58.9 135 31.9
Thecc.02G238600 Theobroma cacao HOM05D000629 ORTHO05D000576 5.3e-07 58.9 224 25.9
AL2G29270 Arabidopsis lyrata HOM05D000629 ORTHO05D000576 7.0e-07 58.5 155 25.8
Migut.K01349 Erythranthe guttata HOM05D000629 ORTHO05D000576 9.1e-07 58.2 144 29.9
Medtr6g008970 Medicago truncatula HOM05D000629 ORTHO05D000576 9.1e-07 58.2 145 31.7
TWI12G1163 Tripterygium wilfordii HOM05D000629 ORTHO05D000576 9.1e-07 58.2 311 23.8
TWI18G0523 Tripterygium wilfordii HOM05D000629 ORTHO05D000576 9.1e-07 58.2 334 23.1
BolC2t08781H Brassica oleracea HOM05D021342 ORTHO05D024513 1.2e-06 57.8 85 44.7
CSS0016443 Camellia sinensis var. sinensis HOM05D000629 ORTHO05D000576 1.2e-06 57.8 56 50.0
CiPaw.06G077100 Carya illinoinensis HOM05D000629 ORTHO05D000576 1.2e-06 57.8 326 23.3
Lj6C798G9 Lonicera japonica HOM05D000629 ORTHO05D000576 1.2e-06 57.8 256 25.0
Haze_12115 Corylus avellana HOM05D000629 ORTHO05D000576 1.5e-06 57.4 330 24.8
Duzib264G1131 Durio zibethinus HOM05D000629 ORTHO05D000576 1.5e-06 57.4 312 24.0
Sp5g25130 Schrenkiella parvula HOM05D000629 ORTHO05D000576 1.5e-06 57.4 146 27.4
Sc11g0008010 Simmondsia chinensis HOM05D000629 ORTHO05D000576 1.5e-06 57.4 143 28.7
MSTRG.23972 Avicennia marina HOM05D000629 ORTHO05D000576 2.0e-06 57.0 144 29.2
CAN.G206.76 Capsicum annuum HOM05D000629 ORTHO05D000576 2.0e-06 57.0 167 31.7
Dinv33684 Davidia involucrata HOM05D000629 ORTHO05D000576 2.0e-06 57.0 144 28.5
Lj2g0007659 Lotus japonicus HOM05D000629 ORTHO05D000576 2.0e-06 57.0 145 27.6
Ah.03g132080 Amaranthus hybridus HOM05D000629 ORTHO05D000576 2.6e-06 56.6 287 24.4
arahy.Tifrunner.gnm1.ann1.TFL5QC Arachis hypogaea HOM05D000629 ORTHO05D000576 2.6e-06 56.6 143 30.1
CSS0005583 Camellia sinensis var. sinensis HOM05D000629 ORTHO05D000084 2.6e-06 56.6 56 48.2
CSS0019274 Camellia sinensis var. sinensis HOM05D000629 ORTHO05D000576 2.6e-06 56.6 56 48.2
Dinv24925 Davidia involucrata HOM05D000629 ORTHO05D000576 2.6e-06 56.6 145 29.0
Thhalv10019296m.g Eutrema salsugineum HOM05D000629 ORTHO05D000576 2.6e-06 56.6 135 30.4
Peaxi162Scf00059g00016 Petunia axillaris HOM05D000629 ORTHO05D000576 2.6e-06 56.6 144 27.1
PGR142G2915 Punica granatum HOM05D000629 ORTHO05D000576 2.6e-06 56.6 322 22.4
Sabra16G0229600 Salix brachista HOM05D000629 ORTHO05D000576 2.6e-06 56.6 144 29.9
CARHR063110 Cardamine hirsuta HOM05D000629 ORTHO05D000576 3.5e-06 56.2 143 27.3
ClCG05G024900 Citrullus lanatus HOM05D000629 ORTHO05D000576 3.5e-06 56.2 251 25.9
Ciclev10030507m.g Citrus clementina HOM05D000629 ORTHO05D000576 3.5e-06 56.2 145 28.3
Hma1.2p1_0849F.1_g228070 Hydrangea macrophylla HOM05D000629 ORTHO05D000576 3.5e-06 56.2 144 28.5
Lsat_1_v5_gn_0_31381 Lactuca sativa HOM05D000629 ORTHO05D000576 3.5e-06 56.2 144 29.2
SGA_v2.0_scaffold30G12504 Striga asiatica HOM05D000629 ORTHO05D000576 3.5e-06 56.2 144 29.2
unitig_22.g6485 Utricularia gibba HOM05D000629 ORTHO05D000576 3.5e-06 56.2 56 48.2
BraA01t04659Z Brassica rapa HOM05D000629 ORTHO05D000576 4.5e-06 55.8 176 26.7
Cfa009083 Carpinus fangiana HOM05D000629 ORTHO05D000576 4.5e-06 55.8 145 29.0
Dinv31135 Davidia involucrata HOM05D000629 ORTHO05D000576 4.5e-06 55.8 145 28.3
Dinv35005 Davidia involucrata HOM05D000629 ORTHO05D000576 4.5e-06 55.8 331 23.0
ECA246G0126 Erigeron canadensis HOM05D000629 ORTHO05D000576 4.5e-06 55.8 144 29.2
Potri.008G192200 Populus trichocarpa HOM05D000629 ORTHO05D000576 4.5e-06 55.8 338 22.8
Ah.02g131710 Amaranthus hybridus HOM05D000629 ORTHO05D000576 5.9e-06 55.5 278 24.8
BNapus_Darmor_BZH_scaffold_133p00100 Brassica napus HOM05D000629 ORTHO05D000576 5.9e-06 55.5 169 27.2
BolC1t05951H Brassica oleracea HOM05D000629 ORTHO05D000576 5.9e-06 55.5 168 27.4
Carub.0001s0989 Capsella rubella HOM05D000629 ORTHO05D000576 5.9e-06 55.5 217 26.3
Manes.01G194400 Manihot esculenta HOM05D000629 ORTHO05D000576 5.9e-06 55.5 145 28.3
Nn4g22953 Nelumbo nucifera HOM05D000629 ORTHO05D000576 5.9e-06 55.5 144 28.5
RhsimUnG0169000 Rhododendron simsii HOM05D000629 ORTHO05D000576 5.9e-06 55.5 144 27.8
Sp6g29020 Schrenkiella parvula HOM05D000629 ORTHO05D000576 5.9e-06 55.5 143 29.4
Sc11g0001520 Simmondsia chinensis HOM05D000629 ORTHO05D000576 5.9e-06 55.5 146 30.1
SGA_v2.0_scaffold8G04282 Striga asiatica HOM05D000629 ORTHO05D000576 5.9e-06 55.5 144 27.1
TWI75G0044 Tripterygium wilfordii HOM05D000629 ORTHO05D000576 5.9e-06 55.5 298 24.2
arahy.Tifrunner.gnm1.ann1.38NBAQ Arachis hypogaea HOM05D000629 ORTHO05D000576 7.7e-06 55.1 143 29.4
BcaC09g47650 Brassica carinata HOM05D000629 ORTHO05D000576 7.7e-06 55.1 168 28.6
BNapus_Darmor_BZH_scaffold_119p00100 Brassica napus HOM05D000629 ORTHO05D000576 7.7e-06 55.1 169 27.2
BNapus_Darmor_BZH_scaffold_97p00340 Brassica napus HOM05D000629 ORTHO05D000576 7.7e-06 55.1 169 27.2
C04p26540 Brassica napus HOM05D000629 ORTHO05D000576 7.7e-06 55.1 109 33.0
Eucgr.J02161 Eucalyptus grandis HOM05D000629 ORTHO05D000576 7.7e-06 55.1 143 27.3
Manes.05G093400 Manihot esculenta HOM05D000629 ORTHO05D000576 7.7e-06 55.1 145 28.3
Phvul.004G022900 Phaseolus vulgaris HOM05D000629 ORTHO05D000576 7.7e-06 55.1 143 29.4
Prupe.1G262300 Prunus persica HOM05D000629 ORTHO05D000576 7.7e-06 55.1 146 27.4
TAR371G0714 Trochodendron aralioides HOM05D000629 ORTHO05D000576 7.7e-06 55.1 144 28.5
VMungo0464G1995 Vigna mungo HOM05D000629 ORTHO05D000576 7.7e-06 55.1 143 29.4


User provided reference genes

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